CN186083

Overview
NameCN186083
Unique NameCN186083
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length776
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN186083 vs. ExPASy Swiss-Prot
Match: SAP1_YEAST (Protein SAP1 OS=Saccharomyces cerevisiae GN=SAP1 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.179e-11
Identity = 50/183 (27.32%), Postives = 89/183 (48.63%), Query Frame = -1
Query:  279 KYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQL-----------------DGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESR-LDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEM 773
            KY+GE  ++VR LF +A++ +PSIIF+DEIDSI  +R           ++   L   + L                 +G E   ++ VL ATN    +D+A  R  R  R+   P P +++R +   K+ S + + +   D  ++ +   G SG+++ ++  +A M  LR+    + + + EM
Sbjct:  677 KYLGESEKLVRALFAIAKKLSPSIIFVDEIDSIMGSRNNENENESSRRIKNEFLVQWSSLSSAAAGSNKSNTNNSDTNGDEDDTRVLVLAATNLPWSIDEAARR--RFVRRQYIPLPEDQTRHVQFKKLLSHQKHTLTESDFDELVKITEGYSGSDITSLAKDAAMGPLRDLGDKLLETEREM 857          
BLAST of CN186083 vs. ExPASy Swiss-Prot
Match: YCF46_ODOSI (Uncharacterized AAA domain-containing protein ycf46 OS=Odontella sinensis GN=ycf46 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.011e-11
Identity = 49/184 (26.63%), Postives = 87/184 (47.28%), Query Frame = -1
Query:  222 IGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSR--RMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMKKETEKNMSLRKL 767
            +GE    +R++  +A   +P I+++DE+D   S     G     + V  T +  L+     E +  + V+   N +D+L   ++R GR D       P  E R +I KIH +  R N  +  D KK+A+     SGAE++    EA M+   +++   T +D  +A+ +++     +N    KL
Sbjct:  300 VGESESRLRQMIDVAETLSPCILWIDEMDKAFSNNDSRGDSGTSNRVLATFISWLS-----EKTKPVFVVATANNVDLLPLEIIRKGRFDEIFFLDLPELEERKEIFKIHIQEFRPNSWKLFDYKKLAQLSESFSGAEIRQSIIEA-MYQAFDQQREFTTDDICLALKQLIPLAQLENSQTLKL 477          
BLAST of CN186083 vs. ExPASy Swiss-Prot
Match: YKX4_SCHPO (Uncharacterized AAA domain-containing protein C328.04 OS=Schizosaccharomyces pombe GN=SPAC328.04 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.627e-11
Identity = 55/165 (33.33%), Postives = 84/165 (50.91%), Query Frame = -1
Query:  318 KYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEAS---------NKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRL----DILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALR 773
            K++GE  ++VR LF +A++ +PSIIF+DEIDS+ SAR  S  GN     +R   E L Q      +          ++ VL ATN    +D A  R  R  R+   P P+E +R     ++LK     ++L    D++ I +     SG++L A+  +A M  LR
Sbjct:  531 KFLGESEKLVRALFTLAKKLSPSIIFVDEIDSLLSAR--SSDGNEHETSRRIKTEFLIQWSSLARAAASRQTADHPRVLVLAATNLPWCIDDAARR--RFVRRTYIPLPDETTRRLHLNNLLKYQKHSLSLE---DIEAIVKATEYYSGSDLTALAKDAAMGPLR 688          
BLAST of CN186083 vs. ExPASy Swiss-Prot
Match: SUR2_SCHPO (Protein sur2 OS=Schizosaccharomyces pombe GN=sur2 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.627e-11
Identity = 52/162 (32.10%), Postives = 85/162 (52.47%), Query Frame = -1
Query:  318 KYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFE---------ASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILK-IHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALR 773
            KY+G+  ++VR LF +A+    S+IF+DEIDSI SAR +SG+ +  S  +R   E L Q               S ++ VL ATN    +D+A  R  R  ++   P P +E+R   L  +   +++ +   DL+++     G SG+++ A+  +A M  LR
Sbjct:  451 KYLGDSEKLVRALFEVAKRQTCSVIFVDEIDSILSARNDSGNEHESS--RRLKTEFLIQWSSLTNAAPDKQTGHSPRVLVLAATNLPWCIDEAARR--RFVKRTYIPLPEKETRYKHLSHLLHNQVHCLTEEDLEELVNLTEGYSGSDITALAKDAAMGPLR 608          
BLAST of CN186083 vs. ExPASy Swiss-Prot
Match: FIGN_MOUSE (Fidgetin OS=Mus musculus GN=Fign PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.480e-11
Identity = 52/207 (25.12%), Postives = 101/207 (48.79%), Query Frame = -1
Query:  198 KYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGF--EASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDIL-KIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALR------------ERRIHVTQEDFEMAVAKVMKKETEKNMSLRKLWK*SFPCA 773
            K+IGE  +++   F++AR   PS+IF+ +ID + S+++        S V R   E L QLD     A ++I V+ AT++ + +D++L R     +++  P P+  +R  I+ ++ ++    +   +   + ++  G SG ++  +C EA +  L              +   VT +DFE A  K+    ++K + +   W   F C+
Sbjct:  558 KWIGEAEKIIHASFLVARCRQPSVIFVSDIDMLLSSQV----SEEHSPVSRMRTEFLMQLDTVLTSAEDQIVVICATSKPEEIDESLRR--YFMKRLLIPLPDSTARHQIIVQLLTQHNYCLNDKEFALLVQRTEGFSGLDVAHLCQEAAVGPLHAMPATDLSAIMPSQLRPVTYQDFENAFCKIQPSISQKELDMYVEWNKMFGCS 758          
BLAST of CN186083 vs. ExPASy Swiss-Prot
Match: FIGN_HUMAN (Fidgetin OS=Homo sapiens GN=FIGN PE=2 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 4.480e-11
Identity = 52/207 (25.12%), Postives = 103/207 (49.76%), Query Frame = -1
Query:  198 KYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGF--EASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDIL-KIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEA-----------GMFALRERRIH-VTQEDFEMAVAKVMKKETEKNMSLRKLWK*SFPCA 773
            K++GE  +++   F++AR   PS+IF+ +ID + S+++        S V R   E L QLD     A ++I V+ AT++ + +D++L R     +++  P P+  +R  I+ ++ S+    +   +   + ++  G SG ++  +C EA            + A+   ++  VT +DFE A  K+    ++K + +   W   F C+
Sbjct:  558 KWLGEAEKIIHASFLVARCRQPSVIFVSDIDMLLSSQV----NEEHSPVSRMRTEFLMQLDTVLTSAEDQIVVICATSKPEEIDESLRR--YFMKRLLIPLPDSTARHQIIVQLLSQHNYCLNDKEFALLVQRTEGFSGLDVAHLCQEAVVGPLHAMPATDLSAIMPSQLRPVTYQDFENAFCKIQPSISQKELDMYVEWNKMFGCS 758          
BLAST of CN186083 vs. ExPASy Swiss-Prot
Match: FIGN_DANRE (Fidgetin OS=Danio rerio GN=fign PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.642e-11
Identity = 52/209 (24.88%), Postives = 106/209 (50.72%), Query Frame = -1
Query:  198 KYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEAS--NKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDIL-KIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEA--------------GMFALRERRIHVTQEDFEMAVAKVMKKETEKNMSLRKLWK*SFPCA 773
            K++GEG ++V+  F++AR   PS++F+ ++D + S+++       +S V R   ELL QLDG  +S    + V+ +T++ + +D++L R     +++  P P+  +R  I+ ++ S+    +   ++  + ++ +G SG ++  +C EA              GM   + R   V+ +DFE    K+    ++K +     W   F C+
Sbjct:  536 KWLGEGEKIVQASFLIARCRQPSVVFISDVDLLLSSQLSE-----ESPVNRIKSELLLQLDGVLSSPEEHVLVVCSTSKPEEIDESLRR--YFVKRLLVPLPDATARHQIISQLLSQHNYCLSDKEVTLLVQRTDGFSGLDVVRLCQEALVGPLHGMPGADLSGMIPGQMR--PVSYQDFENVFCKIQPSISQKELDTYTEWNKMFGCS 735          
The following BLAST results are available for this feature:
BLAST of CN186083 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 377
Match NameE-valueIdentityDescription
SAP1_YEAST1.179e-1127.32Protein SAP1 OS=Saccharomyces cerevisiae GN=SAP1 P... [more]
YCF46_ODOSI2.011e-1126.63Uncharacterized AAA domain-containing protein ycf4... [more]
YKX4_SCHPO2.627e-1133.33Uncharacterized AAA domain-containing protein C328... [more]
SUR2_SCHPO2.627e-1132.10Protein sur2 OS=Schizosaccharomyces pombe GN=sur2 ... [more]
FIGN_MOUSE4.480e-1125.12Fidgetin OS=Mus musculus GN=Fign PE=1 SV=1[more]
FIGN_HUMAN4.480e-1125.12Fidgetin OS=Homo sapiens GN=FIGN PE=2 SV=2[more]
FIGN_DANRE7.642e-1124.88Fidgetin OS=Danio rerio GN=fign PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002F11_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002F11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186083 ID=CN186083; Name=CN186083; organism=Citrus sinensis; type=EST; length=776bp
TTTTTTTTTTTTTTTTTGCATGCGAATTTAAATTTAGATAAAACCGTTTG
CAAATTTGTTTATCATAAGAGGCTAGAGCGCAAGAAAAGACATACAGTCA
GGCTAAAAGGGCCTATCGTGCAAATGTCCCAGAACACGAGTGAGTGCCGT
TAAGGACTACTTGAATCTTGCTCAGAAAATAAGCAAATACACAGCACAGC
ACATGGAAATGATTACTTCCACAACTTCCGCAAGGACATGTTCTTCTCTG
TTTCTTTCTTCATGACCTTGGCCACTGCCATCTCAAAATCTTCCTGTGTT
ACATGGATCCTTCTCTCTCTTAGAGCAAACATACCGGCTTCTGTGCACAC
AGCCTTAAGCTCCGCACCAGATGCACCATTCATCTTCTCGGCAATCTTCT
TCAAATCAATGCCACGCATTAAATTCATTCTTCTTGAATGAATTTTTAGG
ATATCAAGACGAGACTCTTCATTAGGATTTGGAAATTCAATCTTTCTGTC
AATTCGTCCTGGCCTGAGAAGAGCTTGATCGAGAATATCAATTCGATTTG
TCGCCATGAGAACCTTAATTTTGTTTGATGCTTCAAATCCATCAAGCTGG
TTGAGCAGCTCCAGCATAGTCCTCTGCACCTCACTGTCACCATTTCCGCT
GCCAGATTCCATTCGGGCAGATCCGATACTGTCAATTTCATCCATAAAAA
TGATAGACGGAGCATGTTCCCTTGCCATAACAAAAAGTTCTCTAACCATT
CTGGAGCCTTCTCCAATGTATTTCTG
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