CN186083

Overview
NameCN186083
Unique NameCN186083
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length776
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN186083 vs. ExPASy Swiss-Prot
Match: PRS7_MACFA (26S protease regulatory subunit 7 OS=Macaca fascicularis GN=PSMC2 PE=2 SV=3)

HSP 1 Score: 199.519 bits (506), Expect = 1.683e-50
Identity = 104/173 (60.12%), Postives = 130/173 (75.14%), Query Frame = -1
Query:  258 QKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMK 776
            QKY+GEG+RMVRELF MAR     +IF DEID+IG AR + G+G GD+EVQRTMLEL+NQLDGF+    IKVLMATNR D LD AL+RPGR+DRKIEF  P+ E R  I KIH+R M++ R I  + +A     ++GAE+++VCTEAGMFA+R RR   T++DF  AV KV+K
Sbjct:  247 QKYVGEGARMVRELFEMARTKKACLIFFDEIDAIGGARFDDGAG-GDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKIEFSLPDLEGRTHIFKIHARSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRARRKIATEKDFLEAVNKVIK 418          
BLAST of CN186083 vs. ExPASy Swiss-Prot
Match: PRS7_HUMAN (26S protease regulatory subunit 7 OS=Homo sapiens GN=PSMC2 PE=1 SV=3)

HSP 1 Score: 199.519 bits (506), Expect = 1.683e-50
Identity = 104/173 (60.12%), Postives = 130/173 (75.14%), Query Frame = -1
Query:  258 QKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMK 776
            QKY+GEG+RMVRELF MAR     +IF DEID+IG AR + G+G GD+EVQRTMLEL+NQLDGF+    IKVLMATNR D LD AL+RPGR+DRKIEF  P+ E R  I KIH+R M++ R I  + +A     ++GAE+++VCTEAGMFA+R RR   T++DF  AV KV+K
Sbjct:  247 QKYVGEGARMVRELFEMARTKKACLIFFDEIDAIGGARFDDGAG-GDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKIEFSLPDLEGRTHIFKIHARSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRARRKIATEKDFLEAVNKVIK 418          
BLAST of CN186083 vs. ExPASy Swiss-Prot
Match: PRS7_BOVIN (26S protease regulatory subunit 7 OS=Bos taurus GN=PSMC2 PE=2 SV=3)

HSP 1 Score: 199.519 bits (506), Expect = 1.683e-50
Identity = 104/173 (60.12%), Postives = 130/173 (75.14%), Query Frame = -1
Query:  258 QKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMK 776
            QKY+GEG+RMVRELF MAR     +IF DEID+IG AR + G+G GD+EVQRTMLEL+NQLDGF+    IKVLMATNR D LD AL+RPGR+DRKIEF  P+ E R  I KIH+R M++ R I  + +A     ++GAE+++VCTEAGMFA+R RR   T++DF  AV KV+K
Sbjct:  247 QKYVGEGARMVRELFEMARTKKACLIFFDEIDAIGGARFDDGAG-GDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKIEFSLPDLEGRTHIFKIHARSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRARRKIATEKDFLEAVNKVIK 418          
BLAST of CN186083 vs. ExPASy Swiss-Prot
Match: PS10A_ARATH (26S protease regulatory subunit 10B homolog A OS=Arabidopsis thaliana GN=RPT4A PE=2 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 1.091e-49
Identity = 99/180 (55.00%), Postives = 132/180 (73.33%), Query Frame = -1
Query:  234 KYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMKKETEKNMS 773
            KYIGE +R++RE+F  AREH P IIFMDEID+IG  R   G+ + D E+QRT++ELLNQLDGF+   K+K++MATNR D+LD ALLRPGR+DRKIE P PNE+SR+DILKIH+  +     ID + I +   G +GA+L+ +CTEAGMFA+R  R +V  EDF  AV K+ + +  ++ S
Sbjct:  212 KYIGESARLIREMFNYAREHQPCIIFMDEIDAIGGRRFSEGT-SADREIQRTLMELLNQLDGFDNLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMDILKIHAAGIAKHGEIDYEAIVKLAEGFNGADLRNICTEAGMFAIRAERDYVIHEDFMKAVRKLSEAKKLESSS 390          
BLAST of CN186083 vs. ExPASy Swiss-Prot
Match: PRS4_ORYSJ (26S protease regulatory subunit 4 homolog OS=Oryza sativa subsp. japonica GN=TBP2 PE=2 SV=2)

HSP 1 Score: 196.052 bits (497), Expect = 1.861e-49
Identity = 98/177 (55.37%), Postives = 137/177 (77.40%), Query Frame = -1
Query:  246 QKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMKKETE 776
            QKY+G+G ++VRELF +A E +PSI+F+DEID++G+ R ++ SG G+ E+QRTMLELLNQLDGF++   +KV++ATNRI+ LD ALLRPGRIDRKIEFP P+ ++R  I +IH+ +M L   ++L++     +  SGA++KA+CTEAG+ ALRERR+ VT  DF+ A  KVM K+ E
Sbjct:  265 QKYLGDGPKLVRELFRVADELSPSIVFIDEIDAVGTKRYDAHSG-GEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSKMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHADFKKAKEKVMFKKKE 440          
BLAST of CN186083 vs. ExPASy Swiss-Prot
Match: PRS4B_ARATH (26S proteasome regulatory subunit 4 homolog B OS=Arabidopsis thaliana GN=RPT2B PE=2 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 1.861e-49
Identity = 97/177 (54.80%), Postives = 137/177 (77.40%), Query Frame = -1
Query:  246 QKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMKKETE 776
            QKY+G+G ++VRELF +A + +PSI+F+DEID++G+ R ++ SG G+ E+QRTMLELLNQLDGF++   +KV++ATNRI+ LD ALLRPGRIDRKIEFP P+ ++R  I +IH+ +M L   ++L++     +  SGA++KA+CTEAG+ ALRERR+ VT  DF+ A  KVM K+ E
Sbjct:  260 QKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDANSG-GEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSKMTLAEDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHVDFKKAKEKVMFKKKE 435          
BLAST of CN186083 vs. ExPASy Swiss-Prot
Match: PRS10_CAEEL (Probable 26S protease regulatory subunit S10B OS=Caenorhabditis elegans GN=rpt-4 PE=1 SV=2)

HSP 1 Score: 196.052 bits (497), Expect = 1.861e-49
Identity = 99/170 (58.24%), Postives = 126/170 (74.12%), Query Frame = -1
Query:  264 KYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKV 773
            KYIGE +RM+RE+F  AR+H P I+FMDEID+IG  R   G+ + D E+QRT++ELLNQLDGF++  K+KV+MATNR D LD ALLRPGR+DRKIE   PNE+SRL+ILKIHS ++     ID + + +  +G S A+L+ VCTEAGMFA+R  R  V  EDF  AV KV
Sbjct:  223 KYIGESARMIREMFNYARDHQPCIVFMDEIDAIGGRRFSEGT-SADREIQRTLMELLNQLDGFDSLGKVKVIMATNRPDTLDPALLRPGRLDRKIEIGLPNEQSRLEILKIHSNKITKHGEIDFEAVVKLSDGFSAADLRNVCTEAGMFAIRAEREFVIDEDFMKAVRKV 391          
BLAST of CN186083 vs. ExPASy Swiss-Prot
Match: PRS7_CAEEL (26S protease regulatory subunit 7 OS=Caenorhabditis elegans GN=rpt-1 PE=1 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 2.430e-49
Identity = 100/173 (57.80%), Postives = 129/173 (74.57%), Query Frame = -1
Query:  258 QKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMK 776
            QKY+GEG+RMVRELF MAR     +IF DEID++G AR + G G GD+EVQRTMLEL+NQLDGF+    IKVLMATNR D LD AL+RPGR+DRK+EF  P+   R  ILKIH+++M++ R I    +A     ++GAE+++VCTEAGMFA+R RR   T++DF  A+ KV+K
Sbjct:  249 QKYVGEGARMVRELFEMARTKKACLIFFDEIDAVGGARFDDGQG-GDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKVEFALPDLAGRAHILKIHAKQMSVERDIRYDLLARLCPNSTGAEIRSVCTEAGMFAIRARRKVATEKDFLEAINKVVK 420          
BLAST of CN186083 vs. ExPASy Swiss-Prot
Match: PRS4A_ARATH (26S proteasome regulatory subunit 4 homolog A OS=Arabidopsis thaliana GN=RPT2A PE=2 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 2.430e-49
Identity = 97/177 (54.80%), Postives = 137/177 (77.40%), Query Frame = -1
Query:  246 QKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMKKETE 776
            QKY+G+G ++VRELF +A + +PSI+F+DEID++G+ R ++ SG G+ E+QRTMLELLNQLDGF++   +KV++ATNRI+ LD ALLRPGRIDRKIEFP P+ ++R  I +IH+ +M L   ++L++     +  SGA++KA+CTEAG+ ALRERR+ VT  DF+ A  KVM K+ E
Sbjct:  260 QKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSG-GEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSKMTLSEDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHPDFKKAKEKVMFKKKE 435          
BLAST of CN186083 vs. ExPASy Swiss-Prot
Match: PRS10_DICDI (26S protease regulatory subunit S10B OS=Dictyostelium discoideum GN=psmC6 PE=1 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 2.430e-49
Identity = 96/185 (51.89%), Postives = 135/185 (72.97%), Query Frame = -1
Query:  222 KYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMK-KETEKNMSLRKL 773
            KYIGE +R++RE+F  AR+H P +IFMDEID+IG  R   G+ + D E+QRT++ELLNQ+DGF+  +K+K++MATNR D+LD ALLRPGR+DRKIE P PNE  R+D+LKIH+  +     +D + IA+  +G + A+L+ VCTEAGMFA+R  R +V +EDF  AV K  + K+ E  +  +K+
Sbjct:  210 KYIGESARVIREMFGYARDHQPCVIFMDEIDAIGGRRFSEGT-SADREIQRTLMELLNQMDGFDTLSKVKIIMATNRPDVLDPALLRPGRLDRKIEIPLPNEAGRVDVLKIHAANITKHGDVDYEAIAKLADGFNAADLRNVCTEAGMFAIRAERDYVMEEDFMKAVRKCQEAKKLEGKLDYQKV 393          
The following BLAST results are available for this feature:
BLAST of CN186083 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 377
Match NameE-valueIdentityDescription
PRS7_MACFA1.683e-5060.1226S protease regulatory subunit 7 OS=Macaca fascic... [more]
PRS7_HUMAN1.683e-5060.1226S protease regulatory subunit 7 OS=Homo sapiens ... [more]
PRS7_BOVIN1.683e-5060.1226S protease regulatory subunit 7 OS=Bos taurus GN... [more]
PS10A_ARATH1.091e-4955.0026S protease regulatory subunit 10B homolog A OS=A... [more]
PRS4_ORYSJ1.861e-4955.3726S protease regulatory subunit 4 homolog OS=Oryza... [more]
PRS4B_ARATH1.861e-4954.8026S proteasome regulatory subunit 4 homolog B OS=A... [more]
PRS10_CAEEL1.861e-4958.24Probable 26S protease regulatory subunit S10B OS=C... [more]
PRS7_CAEEL2.430e-4957.8026S protease regulatory subunit 7 OS=Caenorhabditi... [more]
PRS4A_ARATH2.430e-4954.8026S proteasome regulatory subunit 4 homolog A OS=A... [more]
PRS10_DICDI2.430e-4951.8926S protease regulatory subunit S10B OS=Dictyostel... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0002F11_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002F11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186083 ID=CN186083; Name=CN186083; organism=Citrus sinensis; type=EST; length=776bp
TTTTTTTTTTTTTTTTTGCATGCGAATTTAAATTTAGATAAAACCGTTTG
CAAATTTGTTTATCATAAGAGGCTAGAGCGCAAGAAAAGACATACAGTCA
GGCTAAAAGGGCCTATCGTGCAAATGTCCCAGAACACGAGTGAGTGCCGT
TAAGGACTACTTGAATCTTGCTCAGAAAATAAGCAAATACACAGCACAGC
ACATGGAAATGATTACTTCCACAACTTCCGCAAGGACATGTTCTTCTCTG
TTTCTTTCTTCATGACCTTGGCCACTGCCATCTCAAAATCTTCCTGTGTT
ACATGGATCCTTCTCTCTCTTAGAGCAAACATACCGGCTTCTGTGCACAC
AGCCTTAAGCTCCGCACCAGATGCACCATTCATCTTCTCGGCAATCTTCT
TCAAATCAATGCCACGCATTAAATTCATTCTTCTTGAATGAATTTTTAGG
ATATCAAGACGAGACTCTTCATTAGGATTTGGAAATTCAATCTTTCTGTC
AATTCGTCCTGGCCTGAGAAGAGCTTGATCGAGAATATCAATTCGATTTG
TCGCCATGAGAACCTTAATTTTGTTTGATGCTTCAAATCCATCAAGCTGG
TTGAGCAGCTCCAGCATAGTCCTCTGCACCTCACTGTCACCATTTCCGCT
GCCAGATTCCATTCGGGCAGATCCGATACTGTCAATTTCATCCATAAAAA
TGATAGACGGAGCATGTTCCCTTGCCATAACAAAAAGTTCTCTAACCATT
CTGGAGCCTTCTCCAATGTATTTCTG
back to top