CN186083

Overview
NameCN186083
Unique NameCN186083
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length776
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN186083 vs. ExPASy Swiss-Prot
Match: PSMR_UNCMA (Proteasome-activating nucleotidase OS=Uncultured methanogenic archaeon RC-I GN=pan PE=3 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 3.174e-49
Identity = 104/182 (57.14%), Postives = 136/182 (74.73%), Query Frame = -1
Query:  231 QKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMKKETEKNMSL 776
            QKYIGEG+RMVRELF +A+E +PSIIF+DEIDSIG+ R++S + +GD EVQRT+++LL ++DGF+    +++L ATNR DILD ALLRPGR DR I+ P P  E+R  ILKIH+R+MNL   +DL+KIA   + +SGA+L A+  EAGMFA+R  R  V   DF  AVAKVM    E+N S+
Sbjct:  231 QKYIGEGARMVRELFELAKEKSPSIIFIDEIDSIGAKRLDSIT-SGDREVQRTLVQLLAEMDGFDPRGNVRILAATNRPDILDPALLRPGRFDRMIKVPMPTAEAREQILKIHARKMNLADDVDLRKIALITDESSGADLSAIVMEAGMFAIRNNRDVVDSSDFNAAVAKVM---GERNRSM 408          
BLAST of CN186083 vs. ExPASy Swiss-Prot
Match: PSMR_METTH (Proteasome-activating nucleotidase OS=Methanobacterium thermoautotrophicum GN=pan PE=3 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 4.145e-49
Identity = 99/178 (55.62%), Postives = 135/178 (75.84%), Query Frame = -1
Query:  243 QKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMKKETEK 776
            +KYIGEG+R+VR +F +A+E +PSIIF+DEID++ + R++S S +GD EVQRT+++LL +LDGFE+   + ++ ATNR DILD ALLRPGR DR IE P PNE+ R +ILKIH+  M L   +D++ +A   +GASGA+LKA+CTEAGMFA+R+ R  VT  DF  AV K+M  E E+
Sbjct:  223 RKYIGEGARLVRGVFELAKEKSPSIIFIDEIDAVAAKRLKS-STSGDREVQRTLMQLLAELDGFESRGNVGIVAATNRPDILDPALLRPGRFDRFIEVPLPNEDGRREILKIHTSGMALAEEVDIELLARITDGASGADLKAICTEAGMFAIRDERDEVTMADFMDAVDKIMGVEKEE 399          
BLAST of CN186083 vs. ExPASy Swiss-Prot
Match: PS10B_ARATH (26S protease regulatory subunit S10B homolog B OS=Arabidopsis thaliana GN=RPT4B PE=2 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 4.145e-49
Identity = 98/180 (54.44%), Postives = 132/180 (73.33%), Query Frame = -1
Query:  234 KYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMKKETEKNMS 773
            KYIGE +R++RE+F  AREH P IIFMDEID+IG  R   G+ + D E+QRT++ELLNQLDGF+   K+K++MATNR D+LD ALLRPGR+DRKIE P PNE+SR++ILKIH+  +     ID + I +   G +GA+L+ +CTEAGMFA+R  R +V  EDF  AV K+ + +  ++ S
Sbjct:  212 KYIGESARLIREMFNYAREHQPCIIFMDEIDAIGGRRFSEGT-SADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHASGIAKHGEIDYEAIVKLGEGFNGADLRNICTEAGMFAIRAERDYVIHEDFMKAVRKLSEAKKLESSS 390          
BLAST of CN186083 vs. ExPASy Swiss-Prot
Match: PSMR_METHJ (Proteasome-activating nucleotidase OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=pan PE=3 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 5.414e-49
Identity = 98/170 (57.65%), Postives = 128/170 (75.29%), Query Frame = -1
Query:  267 QKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAK 776
            QKYIGEG+R+VRELF +A+E APSI+F+DEID+IG++R E+ + +GD EVQRT+++LL  +DGFE    +K++ ATNRIDILD ALLRPGR DR IE P P+ E R  ILK+H+R MNL   +DL ++A    G +GAEL A+C EAGMFA+R+    V QEDF  A+ K
Sbjct:  225 QKYIGEGARLVRELFDLAKEKAPSIVFIDEIDAIGASRTEAMT-SGDREVQRTLMQLLAAMDGFEPRGDVKIIGATNRIDILDAALLRPGRFDRIIEIPLPDTEGRYSILKVHTRCMNLSEDVDLMEVARLTEGRNGAELNAICMEAGMFAIRKEHPQVDQEDFLTALNK 393          
BLAST of CN186083 vs. ExPASy Swiss-Prot
Match: PRS7_YEAST (26S protease regulatory subunit 7 homolog OS=Saccharomyces cerevisiae GN=RPT1 PE=1 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 5.414e-49
Identity = 101/172 (58.72%), Postives = 129/172 (75.00%), Query Frame = -1
Query:  261 QKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVM 776
            QKY+GEG+RMVRELF MAR     IIF DEID++G AR + G+G GD+EVQRTMLEL+ QLDGF+    IKV+ ATNR + LD ALLRPGRIDRK+EF  P+ E R +I +IHS+ M++ RGI  + I+     ++GAEL++VCTEAGMFA+R RR   T++DF  AV KV+
Sbjct:  281 QKYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAG-GDNEVQRTMLELITQLDGFDPRGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRARRKVATEKDFLKAVDKVI 451          
BLAST of CN186083 vs. ExPASy Swiss-Prot
Match: PSMR_METM6 (Proteasome-activating nucleotidase OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=pan PE=3 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 9.234e-49
Identity = 94/185 (50.81%), Postives = 142/185 (76.76%), Query Frame = -1
Query:  222 QKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMKKETEKNMSLRKL 776
            +K+IGEG+++VR++F +A+E +P IIF+DEID++ S R ES +G GD EVQRT+++LL ++DGF++   +K++ ATNR DILD A+LRPGR DR IE   P+E+ RLDILKIH+ +MNL +G+DL+++A+      GA+LKAVCTEAGMFA+RE R  +  +DF+ A++K+  K+ + +  + +L
Sbjct:  220 KKFIGEGAKLVRDVFKLAKEKSPCIIFIDEIDAVASKRTESLTG-GDREVQRTLMQLLAEMDGFDSRGDVKIIAATNRPDILDPAILRPGRFDRIIEISMPDEDGRLDILKIHTEKMNL-KGVDLREVAKLAENMVGADLKAVCTEAGMFAIREEREFIKMDDFKEAISKITGKKEKCSYDMPQL 402          
BLAST of CN186083 vs. ExPASy Swiss-Prot
Match: PSMR_METB6 (Proteasome-activating nucleotidase OS=Methanoregula boonei (strain 6A8) GN=pan PE=3 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 9.234e-49
Identity = 94/171 (54.97%), Postives = 133/171 (77.78%), Query Frame = -1
Query:  264 QKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKV 776
            QKYIGEG+R+VRELF +A++ AP+IIF+DEID++G++R E+ + +GD EVQRT+++LL  +DGFE    +K++ ATNRIDILD+ALLRPGR DR IE P P+EE RL ILK+H+R + +   ++L +IA    G +GA+L+A+C EAGM+A+R  R  +T+EDF  A+ KV
Sbjct:  250 QKYIGEGARLVRELFDLAKKKAPTIIFIDEIDAVGASRTEANT-SGDREVQRTLMQLLAGMDGFETRGDVKIIGATNRIDILDKALLRPGRFDRIIEIPLPDEEGRLSILKVHTRTLTMEETVNLPEIAGLTEGKNGADLRAICMEAGMYAIRNERPAITREDFLSAIEKV 419          
BLAST of CN186083 vs. ExPASy Swiss-Prot
Match: PRS7_DICDI (26S protease regulatory subunit 7 OS=Dictyostelium discoideum GN=psmC2 PE=1 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 9.234e-49
Identity = 99/173 (57.23%), Postives = 129/173 (74.57%), Query Frame = -1
Query:  258 QKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMK 776
            QKY+GEG+RMVR+LF MAR     IIF DE+D+IG AR + G+G GD+EVQRTMLEL+NQLDGF+    IKVLMATNR D LD ALLRPGR+DRK+EF  P+ E R  I  IH++ M+  R I  + +A     ++GA++++VCTEAGMFA+R RR  V+++DF  A+ KV+K
Sbjct:  242 QKYVGEGARMVRDLFQMARSKKACIIFFDEVDAIGGARFDDGAG-GDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLEGRAHIFTIHAKTMSCARDIRFELLARLCPNSTGADIRSVCTEAGMFAIRARRKVVSEKDFLEAIDKVIK 413          
BLAST of CN186083 vs. ExPASy Swiss-Prot
Match: PRS6A_SOLLC (26S protease regulatory subunit 6A homolog OS=Solanum lycopersicum GN=TBP1 PE=2 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 9.234e-49
Identity = 96/175 (54.86%), Postives = 132/175 (75.43%), Query Frame = -1
Query:  252 QKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMKKE 776
            Q +IG+G+++VR+ F +A+E +P IIF+DEID+IG+ R +S   +GD EVQRTMLELLNQLDGF + ++IKV+ ATNR DILD AL+R GR+DRKIEFP+P EE+R  IL+IHSR+MN+   ++ +++A   +  +GA+LKAVC EAGM ALR     VT EDF   + +V  K+
Sbjct:  242 QMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDS-EVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVNPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVTHEDFNEGIIQVQAKK 415          
BLAST of CN186083 vs. ExPASy Swiss-Prot
Match: PRS6A_ORYSJ (26S protease regulatory subunit 6A homolog OS=Oryza sativa subsp. japonica GN=TBP1 PE=2 SV=2)

HSP 1 Score: 193.741 bits (491), Expect = 9.234e-49
Identity = 96/175 (54.86%), Postives = 132/175 (75.43%), Query Frame = -1
Query:  252 QKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMKKE 776
            Q +IG+G+++VR+ F +A+E +P IIF+DEID+IG+ R +S   +GD EVQRTMLELLNQLDGF +  +IKV+ ATNR DILD AL+R GR+DRKIEFP+P+EE+R  IL+IHSR+MN+   ++ +++A   +  +GA+LKAVC EAGM ALR     VT EDF   + +V  K+
Sbjct:  248 QMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDS-EVSGDREVQRTMLELLNQLDGFSSDERIKVIAATNRADILDPALMRSGRLDRKIEFPHPSEEARARILQIHSRKMNVNPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVTHEDFNEGIIQVQAKK 421          
The following BLAST results are available for this feature:
BLAST of CN186083 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 377
Match NameE-valueIdentityDescription
PSMR_UNCMA3.174e-4957.14Proteasome-activating nucleotidase OS=Uncultured m... [more]
PSMR_METTH4.145e-4955.62Proteasome-activating nucleotidase OS=Methanobacte... [more]
PS10B_ARATH4.145e-4954.4426S protease regulatory subunit S10B homolog B OS=... [more]
PSMR_METHJ5.414e-4957.65Proteasome-activating nucleotidase OS=Methanospiri... [more]
PRS7_YEAST5.414e-4958.7226S protease regulatory subunit 7 homolog OS=Sacch... [more]
PSMR_METM69.234e-4950.81Proteasome-activating nucleotidase OS=Methanococcu... [more]
PSMR_METB69.234e-4954.97Proteasome-activating nucleotidase OS=Methanoregul... [more]
PRS7_DICDI9.234e-4957.2326S protease regulatory subunit 7 OS=Dictyostelium... [more]
PRS6A_SOLLC9.234e-4954.8626S protease regulatory subunit 6A homolog OS=Sola... [more]
PRS6A_ORYSJ9.234e-4954.8626S protease regulatory subunit 6A homolog OS=Oryz... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002F11_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002F11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186083 ID=CN186083; Name=CN186083; organism=Citrus sinensis; type=EST; length=776bp
TTTTTTTTTTTTTTTTTGCATGCGAATTTAAATTTAGATAAAACCGTTTG
CAAATTTGTTTATCATAAGAGGCTAGAGCGCAAGAAAAGACATACAGTCA
GGCTAAAAGGGCCTATCGTGCAAATGTCCCAGAACACGAGTGAGTGCCGT
TAAGGACTACTTGAATCTTGCTCAGAAAATAAGCAAATACACAGCACAGC
ACATGGAAATGATTACTTCCACAACTTCCGCAAGGACATGTTCTTCTCTG
TTTCTTTCTTCATGACCTTGGCCACTGCCATCTCAAAATCTTCCTGTGTT
ACATGGATCCTTCTCTCTCTTAGAGCAAACATACCGGCTTCTGTGCACAC
AGCCTTAAGCTCCGCACCAGATGCACCATTCATCTTCTCGGCAATCTTCT
TCAAATCAATGCCACGCATTAAATTCATTCTTCTTGAATGAATTTTTAGG
ATATCAAGACGAGACTCTTCATTAGGATTTGGAAATTCAATCTTTCTGTC
AATTCGTCCTGGCCTGAGAAGAGCTTGATCGAGAATATCAATTCGATTTG
TCGCCATGAGAACCTTAATTTTGTTTGATGCTTCAAATCCATCAAGCTGG
TTGAGCAGCTCCAGCATAGTCCTCTGCACCTCACTGTCACCATTTCCGCT
GCCAGATTCCATTCGGGCAGATCCGATACTGTCAATTTCATCCATAAAAA
TGATAGACGGAGCATGTTCCCTTGCCATAACAAAAAGTTCTCTAACCATT
CTGGAGCCTTCTCCAATGTATTTCTG
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