CN186083

Overview
NameCN186083
Unique NameCN186083
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length776
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN186083 vs. ExPASy Swiss-Prot
Match: PRS4_SCHPO (26S protease regulatory subunit 4 homolog OS=Schizosaccharomyces pombe GN=mts2 PE=2 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 1.575e-48
Identity = 98/178 (55.06%), Postives = 135/178 (75.84%), Query Frame = -1
Query:  246 QKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNK-IKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMKKETE 776
            QKY+G+G R+VR+LF  A EH+PSI+F+DEID+IG+ R ++ SG  + E+QRTMLELLNQLDGF+ S + IKV+MATNRI  LD AL+RPGRIDRKI F NP+E ++  I  IH+ +MNL   ++L+++ +  +  SGAE+KA+ +EAG+ ALRERR+ V  +DF  A  KV+K + E
Sbjct:  263 QKYLGDGPRLVRQLFNAAEEHSPSIVFIDEIDAIGTKRYDAQSG-AEREIQRTMLELLNQLDGFDTSQRDIKVIMATNRISDLDPALIRPGRIDRKILFENPDEATKRKIFTIHTSKMNLGEDVNLEELIQCKDDLSGAEIKAIVSEAGLLALRERRMRVVMDDFRQAREKVLKTKDE 439          
BLAST of CN186083 vs. ExPASy Swiss-Prot
Match: PSMR_METM5 (Proteasome-activating nucleotidase OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=pan PE=3 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 2.057e-48
Identity = 94/185 (50.81%), Postives = 140/185 (75.68%), Query Frame = -1
Query:  222 QKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMKKETEKNMSLRKL 776
            +K+IGEG+++VR++F +A+E +P IIF+DEID++ S R ES +G GD EVQRT+++LL ++DGF++   +K++ ATNR DILD A+LRPGR DR IE   P+E+ RLDILKIH+ +MNL +G+DL+++A+      GA+LKAVCTEAGMFA+RE R  +  +DF  A+ K+  K+ + +  + +L
Sbjct:  220 KKFIGEGAKLVRDVFKLAKEKSPCIIFIDEIDAVASKRTESLTG-GDREVQRTLMQLLAEMDGFDSRGDVKIIAATNRPDILDPAILRPGRFDRIIEISMPDEDGRLDILKIHTEKMNL-KGVDLREVAKIAENMVGADLKAVCTEAGMFAIREEREFIKMDDFREAITKITGKKEKCSYDMPQL 402          
BLAST of CN186083 vs. ExPASy Swiss-Prot
Match: PS6AA_ARATH (26S protease regulatory subunit 6A homolog A OS=Arabidopsis thaliana GN=RPT5A PE=2 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 2.057e-48
Identity = 96/175 (54.86%), Postives = 130/175 (74.29%), Query Frame = -1
Query:  252 QKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMKKE 776
            Q +IG+G+++VR+ F +A+E AP IIF+DEID+IG+ R +S   +GD EVQRTMLELLNQLDGF +  +IKV+ ATNR DILD AL+R GR+DRKIEFP+P EE+R  IL+IHSR+MN+   ++ +++A   +  +GA+LKAVC EAGM ALR     V  EDF   + +V  K+
Sbjct:  243 QMFIGDGAKLVRDAFQLAKEKAPCIIFIDEIDAIGTKRFDS-EVSGDREVQRTMLELLNQLDGFSSDERIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAKK 416          
BLAST of CN186083 vs. ExPASy Swiss-Prot
Match: PRS6A_RAT (26S protease regulatory subunit 6A OS=Rattus norvegicus GN=Psmc3 PE=2 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 2.057e-48
Identity = 94/175 (53.71%), Postives = 132/175 (75.43%), Query Frame = -1
Query:  252 QKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMKKE 776
            Q +IG+G+++VR+ F +A+E APSIIF+DE+D+IG+ R +S    GD EVQRTMLELLNQLDGF+ + ++KV+ ATNR+DILD ALLR GR+DRKIEFP PNEE+R  I++IHSR+MN+   ++ +++A   +  +GA+ KAVC EAGM ALR     +T ED+   + +V  K+
Sbjct:  258 QMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKA-GDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDILDPALLRSGRLDRKIEFPMPNEEARARIMQIHSRKMNVSPDVNYEELARCTDDFNGAQCKAVCVEAGMIALRRGATELTHEDYMEGILEVQAKK 431          
BLAST of CN186083 vs. ExPASy Swiss-Prot
Match: PRS6A_HUMAN (26S protease regulatory subunit 6A OS=Homo sapiens GN=PSMC3 PE=1 SV=3)

HSP 1 Score: 192.586 bits (488), Expect = 2.057e-48
Identity = 94/175 (53.71%), Postives = 132/175 (75.43%), Query Frame = -1
Query:  252 QKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMKKE 776
            Q +IG+G+++VR+ F +A+E APSIIF+DE+D+IG+ R +S    GD EVQRTMLELLNQLDGF+ + ++KV+ ATNR+DILD ALLR GR+DRKIEFP PNEE+R  I++IHSR+MN+   ++ +++A   +  +GA+ KAVC EAGM ALR     +T ED+   + +V  K+
Sbjct:  258 QMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKA-GDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDILDPALLRSGRLDRKIEFPMPNEEARARIMQIHSRKMNVSPDVNYEELARCTDDFNGAQCKAVCVEAGMIALRRGATELTHEDYMEGILEVQAKK 431          
BLAST of CN186083 vs. ExPASy Swiss-Prot
Match: PRS6A_BRACM (26S protease regulatory subunit 6A homolog OS=Brassica campestris GN=TBP1 PE=2 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 2.057e-48
Identity = 96/175 (54.86%), Postives = 130/175 (74.29%), Query Frame = -1
Query:  252 QKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMKKE 776
            Q +IG+G+++VR+ F +A+E AP IIF+DEID+IG+ R +S   +GD EVQRTMLELLNQLDGF +  +IKV+ ATNR DILD AL+R GR+DRKIEFP+P EE+R  IL+IHSR+MN+   ++ +++A   +  +GA+LKAVC EAGM ALR     V  EDF   + +V  K+
Sbjct:  243 QMFIGDGAKLVRDAFQLAKEKAPCIIFIDEIDAIGTKRFDS-EVSGDREVQRTMLELLNQLDGFSSDERIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAKK 416          
BLAST of CN186083 vs. ExPASy Swiss-Prot
Match: PS6AB_ARATH (26S protease regulatory subunit 6A homolog B OS=Arabidopsis thaliana GN=RPT5B PE=1 SV=3)

HSP 1 Score: 192.2 bits (487), Expect = 2.687e-48
Identity = 95/175 (54.29%), Postives = 132/175 (75.43%), Query Frame = -1
Query:  252 QKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMKKE 776
            Q +IG+G+++VR+ F++A+E +P IIF+DEID+IG+ R +S   +GD EVQRTMLELLNQLDGF + ++IKV+ ATNR DILD AL+R GR+DRKIEFP+P EE+R  IL+IHSR+MN+   ++ +++A   +  +GA+LKAVC EAGM ALR     V  EDF   + +V  K+
Sbjct:  242 QMFIGDGAKLVRDAFLLAKEKSPCIIFIDEIDAIGTKRFDS-EVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARGRILQIHSRKMNVNADVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAKK 415          
BLAST of CN186083 vs. ExPASy Swiss-Prot
Match: PRS7_SCHPO (26S protease regulatory subunit 7 homolog OS=Schizosaccharomyces pombe GN=rpt1 PE=1 SV=2)

HSP 1 Score: 192.2 bits (487), Expect = 2.687e-48
Identity = 102/173 (58.96%), Postives = 128/173 (73.99%), Query Frame = -1
Query:  258 QKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMK 776
            QKY+GEG+RMVRELF MAR     IIF DEID+IG AR + G+G GD+EVQRTMLEL+ QLDGF+    IKVL ATNR + LD+AL+RPGRIDRK+EF  P+ E R  IL+IH++ M + + I  + IA      +GAEL++VCTEAGMFA+R RR   T++DF  AV KV+K
Sbjct:  251 QKYVGEGARMVRELFEMARTKKACIIFFDEIDAIGGARFDDGAG-GDNEVQRTMLELITQLDGFDPRGNIKVLFATNRPNTLDEALMRPGRIDRKVEFGLPDLEGRAHILRIHAKSMAIDKDIRWELIARLCPSQTGAELRSVCTEAGMFAIRARRRVATEKDFLDAVQKVVK 422          
BLAST of CN186083 vs. ExPASy Swiss-Prot
Match: PSMR_METMP (Proteasome-activating nucleotidase OS=Methanococcus maripaludis GN=pan PE=3 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 4.583e-48
Identity = 93/185 (50.27%), Postives = 141/185 (76.22%), Query Frame = -1
Query:  222 QKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMKKETEKNMSLRKL 776
            +K+IGEG+++VR++F +A+E +P IIF+DEID++ S R ES +G GD EVQRT+++LL ++DGF++   +K++ ATNR DILD A+LRPGR DR IE   P+E+ RL+ILKIH+ +MNL +G+DL+++A+      GA+LKAVCTEAGMFA+RE R  +  +DF  A++K+  K+ + +  + +L
Sbjct:  220 KKFIGEGAKLVRDVFKLAKEKSPCIIFIDEIDAVASKRTESLTG-GDREVQRTLMQLLAEMDGFDSRGDVKIIAATNRPDILDPAILRPGRFDRIIEISMPDEDGRLEILKIHTEKMNL-KGVDLREVAKIAENMVGADLKAVCTEAGMFAIREEREFIKMDDFREAISKITGKKEKCSYDMPQL 402          
BLAST of CN186083 vs. ExPASy Swiss-Prot
Match: PRS6A_ENCCU (26S protease regulatory subunit 6A OS=Encephalitozoon cuniculi GN=RPT5 PE=1 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 4.583e-48
Identity = 93/178 (52.25%), Postives = 131/178 (73.60%), Query Frame = -1
Query:  243 QKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMKKETEK 776
            Q YIG+G+R+VR+ F +A+E  P+IIF+DEID+IG+ R +S    GD EVQRTMLELLNQLDGF +S ++K++ ATNR+DILD ALLR GR+DRKIEFP PN   R  IL+IH+R+M++   ++  ++A    G +GA+ KAVC EAGM ALR+ +  ++Q DF   + +V+ ++  K
Sbjct:  220 QMYIGDGARLVRDAFALAKERKPTIIFIDEIDAIGAKRSDSDQ-TGDREVQRTMLELLNQLDGFSSSEEVKIIAATNRVDILDPALLRSGRLDRKIEFPLPNTLGRKRILQIHARKMSVRDDVNFDELARSTEGFNGAQCKAVCVEAGMAALRKEKTEISQNDFMDGIQEVLSRKKSK 396          
The following BLAST results are available for this feature:
BLAST of CN186083 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 377
Match NameE-valueIdentityDescription
PRS4_SCHPO1.575e-4855.0626S protease regulatory subunit 4 homolog OS=Schiz... [more]
PSMR_METM52.057e-4850.81Proteasome-activating nucleotidase OS=Methanococcu... [more]
PS6AA_ARATH2.057e-4854.8626S protease regulatory subunit 6A homolog A OS=Ar... [more]
PRS6A_RAT2.057e-4853.7126S protease regulatory subunit 6A OS=Rattus norve... [more]
PRS6A_HUMAN2.057e-4853.7126S protease regulatory subunit 6A OS=Homo sapiens... [more]
PRS6A_BRACM2.057e-4854.8626S protease regulatory subunit 6A homolog OS=Bras... [more]
PS6AB_ARATH2.687e-4854.2926S protease regulatory subunit 6A homolog B OS=Ar... [more]
PRS7_SCHPO2.687e-4858.9626S protease regulatory subunit 7 homolog OS=Schiz... [more]
PSMR_METMP4.583e-4850.27Proteasome-activating nucleotidase OS=Methanococcu... [more]
PRS6A_ENCCU4.583e-4852.2526S protease regulatory subunit 6A OS=Encephalitoz... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002F11_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002F11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186083 ID=CN186083; Name=CN186083; organism=Citrus sinensis; type=EST; length=776bp
TTTTTTTTTTTTTTTTTGCATGCGAATTTAAATTTAGATAAAACCGTTTG
CAAATTTGTTTATCATAAGAGGCTAGAGCGCAAGAAAAGACATACAGTCA
GGCTAAAAGGGCCTATCGTGCAAATGTCCCAGAACACGAGTGAGTGCCGT
TAAGGACTACTTGAATCTTGCTCAGAAAATAAGCAAATACACAGCACAGC
ACATGGAAATGATTACTTCCACAACTTCCGCAAGGACATGTTCTTCTCTG
TTTCTTTCTTCATGACCTTGGCCACTGCCATCTCAAAATCTTCCTGTGTT
ACATGGATCCTTCTCTCTCTTAGAGCAAACATACCGGCTTCTGTGCACAC
AGCCTTAAGCTCCGCACCAGATGCACCATTCATCTTCTCGGCAATCTTCT
TCAAATCAATGCCACGCATTAAATTCATTCTTCTTGAATGAATTTTTAGG
ATATCAAGACGAGACTCTTCATTAGGATTTGGAAATTCAATCTTTCTGTC
AATTCGTCCTGGCCTGAGAAGAGCTTGATCGAGAATATCAATTCGATTTG
TCGCCATGAGAACCTTAATTTTGTTTGATGCTTCAAATCCATCAAGCTGG
TTGAGCAGCTCCAGCATAGTCCTCTGCACCTCACTGTCACCATTTCCGCT
GCCAGATTCCATTCGGGCAGATCCGATACTGTCAATTTCATCCATAAAAA
TGATAGACGGAGCATGTTCCCTTGCCATAACAAAAAGTTCTCTAACCATT
CTGGAGCCTTCTCCAATGTATTTCTG
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