CN186083

Overview
NameCN186083
Unique NameCN186083
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length776
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN186083 vs. ExPASy Swiss-Prot
Match: PRS10_HUMAN (26S protease regulatory subunit S10B OS=Homo sapiens GN=PSMC6 PE=1 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 3.880e-47
Identity = 95/170 (55.88%), Postives = 125/170 (73.53%), Query Frame = -1
Query:  264 KYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKV 773
            KYIGE +R++RE+F  AR+H P IIFMDEID+IG  R   G+ + D E+QRT++ELLNQ+DGF+  +++K++MATNR D LD ALLRPGR+DRKI    PNE++RLDILKIH+  +     ID + I +  +G +GA+L+ VCTEAGMFA+R     V QEDF  AV KV
Sbjct:  206 KYIGESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGT-SADREIQRTLMELLNQMDGFDTLHRVKMIMATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDGFNGADLRNVCTEAGMFAIRADHDFVVQEDFMKAVRKV 374          
BLAST of CN186083 vs. ExPASy Swiss-Prot
Match: PSMR_METVS (Proteasome-activating nucleotidase OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=pan PE=3 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 5.067e-47
Identity = 93/185 (50.27%), Postives = 139/185 (75.14%), Query Frame = -1
Query:  222 QKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMKKETEKNMSLRKL 776
            +K+IGEG+++VR++F +A+E +P IIF+DEID++ S R ES +G GD EVQRT+++LL ++DGF++   +K++ ATNR DILD A+LRPGR DR IE   P+E+ RL+I KIH+ +MN+ + +DL++IA+      GA++KAVCTEAGMFA+RE R +VT +DF+ A+ KV  K+ +    +  L
Sbjct:  220 KKFIGEGAKLVRDVFKLAKEKSPCIIFIDEIDAVASKRTESLTG-GDREVQRTLMQLLAEMDGFDSRGDVKIIAATNRPDILDPAILRPGRFDRIIEIAAPDEDGRLEIFKIHTDKMNI-KSVDLREIAKMAENMVGADIKAVCTEAGMFAIREGREYVTTKDFKEALLKVTGKKEKSEEGIAHL 402          
BLAST of CN186083 vs. ExPASy Swiss-Prot
Match: PSMR_METPE (Proteasome-activating nucleotidase OS=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=pan PE=3 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 6.618e-47
Identity = 91/170 (53.53%), Postives = 130/170 (76.47%), Query Frame = -1
Query:  267 QKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAK 776
            QKYIGEG+R+VRELF +A++ +PSIIF+DEID+IG++R ES + +GD EV RT+++LL ++DGF     ++++ ATNRIDILD+ALLRPGR DR IE P P+ E R+ IL IH   MN+ + +D++ IA + +G +GA+L+++C EAGMFA+R     VT EDFE ++ K
Sbjct:  225 QKYIGEGARLVRELFELAKKKSPSIIFIDEIDAIGASRTESNT-SGDREVHRTLMQLLAEMDGFSNRGDVRIIGATNRIDILDRALLRPGRFDRIIEIPAPDIEGRVSILNIHCAGMNIDKKVDIRDIATRTDGKNGADLRSICMEAGMFAIRSDHEMVTLEDFEQSIEK 393          
BLAST of CN186083 vs. ExPASy Swiss-Prot
Match: PRS10_BOVIN (26S protease regulatory subunit S10B OS=Bos taurus GN=PSMC6 PE=2 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 1.129e-46
Identity = 95/170 (55.88%), Postives = 124/170 (72.94%), Query Frame = -1
Query:  264 KYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKV 773
            KYIGE +R++RE+F  AR+H P IIFMDEID+IG  R   G+ + D E+QRT++ELLNQ+DGF+  +++K++MATNR D LD ALLRPGR+DRKI    PNE++RLDILKIH+  +     ID + I +  +G +GA+L  VCTEAGMFA+R     V QEDF  AV KV
Sbjct:  206 KYIGESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGT-SADREIQRTLMELLNQMDGFDTLHRVKMIMATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDGFNGADLGNVCTEAGMFAIRADHDFVVQEDFMKAVRKV 374          
BLAST of CN186083 vs. ExPASy Swiss-Prot
Match: PSMR_METAC (Proteasome-activating nucleotidase OS=Methanosarcina acetivorans GN=pan PE=3 SV=2)

HSP 1 Score: 184.882 bits (468), Expect = 4.289e-46
Identity = 97/181 (53.59%), Postives = 130/181 (71.82%), Query Frame = -1
Query:  237 QKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKV-MKKETEKNM 776
            QKYIG+GS++VRE+F MAR+ APSIIF+DE+DSI + R+   +G  D EVQRT+++LL ++DGF+    I+++ ATNR D+LD A+LRPGR DR +  P P  E+R  ILKIH  +M L   ID KK+A+   G SGA+LKA+ TEAGMFA+R+ +  V  EDF  AV KV M  +T+K M
Sbjct:  231 QKYIGDGSKLVREIFEMARKKAPSIIFIDELDSIAARRLNETTG-ADREVQRTLMQLLAEMDGFDKRKNIRIIAATNRPDVLDPAILRPGRFDRLVHVPMPGIEARGKILKIHCGKMTLAGDIDFKKLAKVTEGMSGADLKAIATEAGMFAVRKDKALVEMEDFLEAVEKVSMAADTQKMM 410          
BLAST of CN186083 vs. ExPASy Swiss-Prot
Match: PSMR_METMA (Proteasome-activating nucleotidase OS=Methanosarcina mazei GN=pan PE=3 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 7.317e-46
Identity = 96/181 (53.04%), Postives = 129/181 (71.27%), Query Frame = -1
Query:  237 QKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKV-MKKETEKNM 776
            QKYIG+GS++VRE+F MAR+ APSIIF+DE+DSI + R+   +G  D EVQRT+++LL ++DGF+    I+++ ATNR D+LD A+LRPGR DR +  P P  E+R  ILKIH  +M L   ID KK+A+   G SGA+LKA+ TEAGMFA+R  +  V  E+F  AV KV M  +T+K M
Sbjct:  231 QKYIGDGSKLVREIFEMARKKAPSIIFIDELDSIAARRLNETTG-ADREVQRTLMQLLAEMDGFDKRKNIRIIAATNRPDVLDPAILRPGRFDRLVHVPMPGIEARGKILKIHCEKMTLAEDIDFKKLAKATEGMSGADLKAIATEAGMFAVRRDKELVEMEEFLEAVEKVSMAADTQKMM 410          
BLAST of CN186083 vs. ExPASy Swiss-Prot
Match: PRS6A_SCHPO (26S protease regulatory subunit 6A OS=Schizosaccharomyces pombe GN=tbp1 PE=2 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 1.630e-45
Identity = 89/177 (50.28%), Postives = 132/177 (74.58%), Query Frame = -1
Query:  246 QKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMKKETE 776
            Q +IG+G+++VR+ F +A+E +P+IIF+DE+D+IG+ R +S    GD EVQRTMLELLNQLDGF + +++KV+ ATNR+D LD ALLR GR+DRK+EFP PNEE+R+ IL+IHSR+M +   I+ +++A   +  +GA LK+VC EAGM ALR+    +  E F   + +V  ++++
Sbjct:  257 QMFIGDGAKLVRDAFALAKEKSPAIIFIDELDAIGTKRFDSEKA-GDREVQRTMLELLNQLDGFSSDDRVKVIAATNRVDTLDPALLRSGRLDRKLEFPLPNEEARVGILRIHSRKMAIDDDINWEELARSTDEYNGAMLKSVCVEAGMIALRQGDTKINHEHFMDGILEVQMRKSK 432          
BLAST of CN186083 vs. ExPASy Swiss-Prot
Match: PSMR2_HALSA (Proteasome-activating nucleotidase 2 OS=Halobacterium salinarium GN=pan2 PE=3 SV=2)

HSP 1 Score: 182.185 bits (461), Expect = 2.780e-45
Identity = 85/170 (50.00%), Postives = 128/170 (75.29%), Query Frame = -1
Query:  264 KYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKV 773
            K+IGEG+++VR+LF +AR+H P+++F+DEID+I S R +S + +GD+EVQRTM++LL+++DGF+    I+++ ATNR D+LD+A+LRPGR DR IE P+PN   R  I +IH+R MN+   +D  ++A      SGA++KA+CTEAGMFA+R+ R  V  +DF+ A  K+
Sbjct:  222 KFIGEGAKLVRDLFQVARDHEPAVVFIDEIDAIASKRTDSKT-SGDAEVQRTMMQLLSEMDGFDERGDIRIIAATNRFDMLDRAILRPGRFDRLIEVPHPNVGGREKIFRIHTRAMNVADSVDFGELAADTGDLSGADVKAICTEAGMFAIRDDRTEVRMQDFQSAREKL 390          
BLAST of CN186083 vs. ExPASy Swiss-Prot
Match: PRS10_SCHPO (Probable 26S protease subunit rpt4 OS=Schizosaccharomyces pombe GN=rpt4 PE=2 SV=2)

HSP 1 Score: 179.874 bits (455), Expect = 1.380e-44
Identity = 92/185 (49.73%), Postives = 128/185 (69.19%), Query Frame = -1
Query:  222 KYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMK-KETEKNMSLRKL 773
            KYIGE +R++RE+F  A+EH P +IFMDEID+IG  R   G+ + D E+QRT++ELLNQ+DGF+   + K++MATNR D LD ALLRPGR+DRKIE P PNE  R++ILKIH  +++    ID + + +  +G +GA+L+ V TEAG  A++E R +V Q D   A  KV   K+ E  +  +KL
Sbjct:  205 KYIGESARIIREMFGYAKEHEPCVIFMDEIDAIGGRRFSEGT-SADREIQRTLMELLNQMDGFDYLGQTKIIMATNRPDTLDPALLRPGRLDRKIEIPLPNEVGRMEILKIHLEKVSKQGEIDYEALVKLTDGTNGADLRNVVTEAGFIAIKEDRDYVIQSDLMSAARKVADLKKLEGTIDYQKL 388          
BLAST of CN186083 vs. ExPASy Swiss-Prot
Match: PRS6B_RAT (26S protease regulatory subunit 6B OS=Rattus norvegicus GN=Psmc4 PE=1 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 1.802e-44
Identity = 89/179 (49.72%), Postives = 129/179 (72.07%), Query Frame = -1
Query:  240 QKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMKKETEKN 776
            QKY+GEG RMVR++F +A+E+AP+IIF+DEID+I + R ++ +G  D EVQR +LELLNQ+DGF+ +  +KV+MATNR D LD ALLRPGR+DRKIEFP P+   +  I    + +MNL   +DL+    + +  SGA++ ++C E+GM A+RE R  V  +DFE A   V+KK+ +++
Sbjct:  237 QKYLGEGPRMVRDVFRLAKENAPAIIFIDEIDAIATKRFDAQTG-ADREVQRILLELLNQMDGFDQNVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVRENRYIVLAKDFEKAYKTVIKKDEQEH 414          
The following BLAST results are available for this feature:
BLAST of CN186083 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 377
Match NameE-valueIdentityDescription
PRS10_HUMAN3.880e-4755.8826S protease regulatory subunit S10B OS=Homo sapie... [more]
PSMR_METVS5.067e-4750.27Proteasome-activating nucleotidase OS=Methanococcu... [more]
PSMR_METPE6.618e-4753.53Proteasome-activating nucleotidase OS=Methanosphae... [more]
PRS10_BOVIN1.129e-4655.8826S protease regulatory subunit S10B OS=Bos taurus... [more]
PSMR_METAC4.289e-4653.59Proteasome-activating nucleotidase OS=Methanosarci... [more]
PSMR_METMA7.317e-4653.04Proteasome-activating nucleotidase OS=Methanosarci... [more]
PRS6A_SCHPO1.630e-4550.2826S protease regulatory subunit 6A OS=Schizosaccha... [more]
PSMR2_HALSA2.780e-4550.00Proteasome-activating nucleotidase 2 OS=Halobacter... [more]
PRS10_SCHPO1.380e-4449.73Probable 26S protease subunit rpt4 OS=Schizosaccha... [more]
PRS6B_RAT1.802e-4449.7226S protease regulatory subunit 6B OS=Rattus norve... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002F11_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002F11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186083 ID=CN186083; Name=CN186083; organism=Citrus sinensis; type=EST; length=776bp
TTTTTTTTTTTTTTTTTGCATGCGAATTTAAATTTAGATAAAACCGTTTG
CAAATTTGTTTATCATAAGAGGCTAGAGCGCAAGAAAAGACATACAGTCA
GGCTAAAAGGGCCTATCGTGCAAATGTCCCAGAACACGAGTGAGTGCCGT
TAAGGACTACTTGAATCTTGCTCAGAAAATAAGCAAATACACAGCACAGC
ACATGGAAATGATTACTTCCACAACTTCCGCAAGGACATGTTCTTCTCTG
TTTCTTTCTTCATGACCTTGGCCACTGCCATCTCAAAATCTTCCTGTGTT
ACATGGATCCTTCTCTCTCTTAGAGCAAACATACCGGCTTCTGTGCACAC
AGCCTTAAGCTCCGCACCAGATGCACCATTCATCTTCTCGGCAATCTTCT
TCAAATCAATGCCACGCATTAAATTCATTCTTCTTGAATGAATTTTTAGG
ATATCAAGACGAGACTCTTCATTAGGATTTGGAAATTCAATCTTTCTGTC
AATTCGTCCTGGCCTGAGAAGAGCTTGATCGAGAATATCAATTCGATTTG
TCGCCATGAGAACCTTAATTTTGTTTGATGCTTCAAATCCATCAAGCTGG
TTGAGCAGCTCCAGCATAGTCCTCTGCACCTCACTGTCACCATTTCCGCT
GCCAGATTCCATTCGGGCAGATCCGATACTGTCAATTTCATCCATAAAAA
TGATAGACGGAGCATGTTCCCTTGCCATAACAAAAAGTTCTCTAACCATT
CTGGAGCCTTCTCCAATGTATTTCTG
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