CN186083

Overview
NameCN186083
Unique NameCN186083
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length776
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN186083 vs. ExPASy Swiss-Prot
Match: PRS6B_MACFA (26S protease regulatory subunit 6B OS=Macaca fascicularis GN=PSMC4 PE=2 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 1.802e-44
Identity = 89/179 (49.72%), Postives = 129/179 (72.07%), Query Frame = -1
Query:  240 QKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMKKETEKN 776
            QKY+GEG RMVR++F +A+E+AP+IIF+DEID+I + R ++ +G  D EVQR +LELLNQ+DGF+ +  +KV+MATNR D LD ALLRPGR+DRKIEFP P+   +  I    + +MNL   +DL+    + +  SGA++ ++C E+GM A+RE R  V  +DFE A   V+KK+ +++
Sbjct:  237 QKYLGEGPRMVRDVFRLAKENAPAIIFIDEIDAIATKRFDAQTG-ADREVQRILLELLNQMDGFDQNVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVRENRYIVLAKDFEKAYKTVIKKDEQEH 414          
BLAST of CN186083 vs. ExPASy Swiss-Prot
Match: PRS6B_HUMAN (26S protease regulatory subunit 6B OS=Homo sapiens GN=PSMC4 PE=1 SV=2)

HSP 1 Score: 179.489 bits (454), Expect = 1.802e-44
Identity = 89/179 (49.72%), Postives = 129/179 (72.07%), Query Frame = -1
Query:  240 QKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMKKETEKN 776
            QKY+GEG RMVR++F +A+E+AP+IIF+DEID+I + R ++ +G  D EVQR +LELLNQ+DGF+ +  +KV+MATNR D LD ALLRPGR+DRKIEFP P+   +  I    + +MNL   +DL+    + +  SGA++ ++C E+GM A+RE R  V  +DFE A   V+KK+ +++
Sbjct:  237 QKYLGEGPRMVRDVFRLAKENAPAIIFIDEIDAIATKRFDAQTG-ADREVQRILLELLNQMDGFDQNVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVRENRYIVLAKDFEKAYKTVIKKDEQEH 414          
BLAST of CN186083 vs. ExPASy Swiss-Prot
Match: PRS6B_BOVIN (26S protease regulatory subunit 6B OS=Bos taurus GN=PSMC4 PE=2 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 1.802e-44
Identity = 89/179 (49.72%), Postives = 129/179 (72.07%), Query Frame = -1
Query:  240 QKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMKKETEKN 776
            QKY+GEG RMVR++F +A+E+AP+IIF+DEID+I + R ++ +G  D EVQR +LELLNQ+DGF+ +  +KV+MATNR D LD ALLRPGR+DRKIEFP P+   +  I    + +MNL   +DL+    + +  SGA++ ++C E+GM A+RE R  V  +DFE A   V+KK+ +++
Sbjct:  237 QKYLGEGPRMVRDVFRLAKENAPAIIFIDEIDAIATKRFDAQTG-ADREVQRILLELLNQMDGFDQNVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVRENRYIVLAKDFEKAYKTVIKKDEQEH 414          
BLAST of CN186083 vs. ExPASy Swiss-Prot
Match: PRS6B_CAEEL (Probable 26S protease regulatory subunit 6B OS=Caenorhabditis elegans GN=rpt-3 PE=2 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 3.074e-44
Identity = 91/176 (51.70%), Postives = 125/176 (71.02%), Query Frame = -1
Query:  249 QKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMKKET 776
            QKY+GEG RMVR++F +A+E++PSIIF+DEID+I + R ++ +G  D EVQR +LELLNQ+DGF+ S  +KV+MATNR D LD ALLRPGR+DRKIEFP P+   +  +      RMNL   +DL+    + +  SGA++ ++C EAGM A+RE R  V  +D E A   V+KK+T
Sbjct:  233 QKYLGEGPRMVRDVFRLAKENSPSIIFIDEIDAIATKRFDAQTG-ADREVQRILLELLNQMDGFDQSTNVKVIMATNRQDTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTVCSRMNLSDDVDLEDWVARPDKISGADINSICQEAGMQAVRENRYVVLTKDLEKAYKNVVKKDT 407          
BLAST of CN186083 vs. ExPASy Swiss-Prot
Match: PRS10_YEAST (26S protease subunit RPT4 OS=Saccharomyces cerevisiae GN=RPT4 PE=1 SV=4)

HSP 1 Score: 178.333 bits (451), Expect = 4.015e-44
Identity = 88/185 (47.57%), Postives = 126/185 (68.11%), Query Frame = -1
Query:  222 KYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMK-KETEKNMSLRKL 773
            KYIGE +R++RE+F  A+EH P IIFMDE+D+IG  R   G+ + D E+QRT++ELL Q+DGF+   + K++MATNR D LD ALLRPGR+DRK+E P PNE  RL+I KIH+ ++      D +   +  +G +GA+++   TEAG FA+R+ R H+  +D   AV KV + K+ E  +  +KL
Sbjct:  254 KYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGT-SADREIQRTLMELLTQMDGFDNLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDFEAAVKMSDGFNGADIRNCATEAGFFAIRDDRDHINPDDLMKAVRKVAEVKKLEGTIEYQKL 437          
BLAST of CN186083 vs. ExPASy Swiss-Prot
Match: PRS6B_MANSE (26S protease regulatory subunit 6B OS=Manduca sexta PE=2 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 8.944e-44
Identity = 88/175 (50.29%), Postives = 125/175 (71.43%), Query Frame = -1
Query:  252 QKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMKKE 776
            QKY+GEG RMVR++F +A+E++P+IIF+DEID+I + R ++ +G  D EVQR +LELLNQ+DGF+ +  +KV+MATNR D LD ALLRPGR+DRKIEFP P+   +  I    + +MNL   +DL++   + +  SGA++ A+C EAGM A+RE R  V  +DFE      +KK+
Sbjct:  234 QKYLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATKRFDAQTG-ADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFSTITAKMNLSEEVDLEEFVARPDRVSGADINAICQEAGMNAVRENRYIVLPKDFEKGYKNNIKKD 407          
BLAST of CN186083 vs. ExPASy Swiss-Prot
Match: PRS6B_DICDI (26S protease regulatory subunit 6B homolog OS=Dictyostelium discoideum GN=psmC4 PE=1 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 8.944e-44
Identity = 87/178 (48.88%), Postives = 128/178 (71.91%), Query Frame = -1
Query:  243 QKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMKKETEK 776
            QKY+GEG R+VR++F +ARE++P+IIF+DEID+I + R ++ +G  D EVQR ++ELLNQ+DGF+ S  +KV+MATNR D LD ALLRPGR+DRKIEFP P+   +  I ++ + +MNL   +DL+    + +  SGAE++++C EAGM A+R+ R  +  +DFE      +KK T +
Sbjct:  222 QKYLGEGPRLVRDVFRLARENSPAIIFIDEIDAIATKRFDAQTG-ADREVQRILMELLNQMDGFDVSVNVKVIMATNRQDTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQVITSKMNLSDEVDLEDYVSRPDKLSGAEIQSICQEAGMHAIRKNRYVILPKDFEKGYKASIKKNTHE 398          
BLAST of CN186083 vs. ExPASy Swiss-Prot
Match: PSMR_AERPE (Proteasome-activating nucleotidase OS=Aeropyrum pernix GN=pan PE=3 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 3.399e-43
Identity = 91/170 (53.53%), Postives = 125/170 (73.53%), Query Frame = -1
Query:  264 KYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKV 773
            K+IGEG+R+VRE+F +ARE APSI+F+DEID+I S R++ G+ +GD EVQRTML+LL +LDGF+  + +KV+ ATNR+D++D A+LRPGR DR IE P P+   RL+IL IH+R+  +   +DL+ IA+   G SGA+LKAV  EAG  A+R     +T +D   AV KV
Sbjct:  212 KFIGEGARLVREIFRLAREKAPSILFIDEIDAIASKRVDIGT-SGDREVQRTMLQLLAELDGFDPLDNVKVIAATNRLDLIDPAVLRPGRFDRIIEVPLPSLRGRLEILGIHTRKAKMAPDVDLEAIAKLTEGFSGADLKAVVVEAGYNAIRRGSRVITMDDMIKAVEKV 380          
BLAST of CN186083 vs. ExPASy Swiss-Prot
Match: PRS6B_ARATH (26S protease regulatory subunit 6B homolog OS=Arabidopsis thaliana GN=RPT3 PE=1 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 5.797e-43
Identity = 87/178 (48.88%), Postives = 128/178 (71.91%), Query Frame = -1
Query:  246 QKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAV-AKVMKKETE 776
            QKY+GEG RMVR++F +A+E+AP+IIF+DE+D+I +AR ++ +G  D EVQR ++ELLNQ+DGF+ +  +KV+MATNR D LD ALLRPGR+DRKIEFP P+   +  + ++ + +MNL   +DL+    + +  S AE+ A+C EAGM A+R+ R  +  +DFE    A V K +T+
Sbjct:  227 QKYLGEGPRMVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTG-ADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTSKMNLSDEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRANVKKPDTD 403          
BLAST of CN186083 vs. ExPASy Swiss-Prot
Match: PRS6B_ENCCU (26S protease regulatory subunit 6B homolog OS=Encephalitozoon cuniculi GN=ECU08_1970 PE=1 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 7.572e-43
Identity = 85/174 (48.85%), Postives = 125/174 (71.84%), Query Frame = -1
Query:  255 QKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMKK 776
            QKY+GEG RMVR++F +ARE APSI+F+DE+DSI + R ++ S + D EVQR ++ELLNQ+DGF+ +  +KV+MATNR D +D ALLRPGR+DRKIEFP P+   +  +    + +M+L   +D++ +  +    S A++ ++C EAGM A+R  R  VTQ DFE A +KV+++
Sbjct:  206 QKYLGEGPRMVRDVFRLAREKAPSIVFIDEVDSIATKRFDA-STSADREVQRVLIELLNQMDGFDPAANVKVIMATNRADTIDPALLRPGRLDRKIEFPLPDRRQKRLVFNAITSKMSLNDSVDIESLVCRPEKISCADINSICQEAGMLAVRASRYMVTQRDFEEAYSKVVER 378          
The following BLAST results are available for this feature:
BLAST of CN186083 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 377
Match NameE-valueIdentityDescription
PRS6B_MACFA1.802e-4449.7226S protease regulatory subunit 6B OS=Macaca fasci... [more]
PRS6B_HUMAN1.802e-4449.7226S protease regulatory subunit 6B OS=Homo sapiens... [more]
PRS6B_BOVIN1.802e-4449.7226S protease regulatory subunit 6B OS=Bos taurus G... [more]
PRS6B_CAEEL3.074e-4451.70Probable 26S protease regulatory subunit 6B OS=Cae... [more]
PRS10_YEAST4.015e-4447.5726S protease subunit RPT4 OS=Saccharomyces cerevis... [more]
PRS6B_MANSE8.944e-4450.2926S protease regulatory subunit 6B OS=Manduca sext... [more]
PRS6B_DICDI8.944e-4448.8826S protease regulatory subunit 6B homolog OS=Dict... [more]
PSMR_AERPE3.399e-4353.53Proteasome-activating nucleotidase OS=Aeropyrum pe... [more]
PRS6B_ARATH5.797e-4348.8826S protease regulatory subunit 6B homolog OS=Arab... [more]
PRS6B_ENCCU7.572e-4348.8526S protease regulatory subunit 6B homolog OS=Ence... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002F11_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002F11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186083 ID=CN186083; Name=CN186083; organism=Citrus sinensis; type=EST; length=776bp
TTTTTTTTTTTTTTTTTGCATGCGAATTTAAATTTAGATAAAACCGTTTG
CAAATTTGTTTATCATAAGAGGCTAGAGCGCAAGAAAAGACATACAGTCA
GGCTAAAAGGGCCTATCGTGCAAATGTCCCAGAACACGAGTGAGTGCCGT
TAAGGACTACTTGAATCTTGCTCAGAAAATAAGCAAATACACAGCACAGC
ACATGGAAATGATTACTTCCACAACTTCCGCAAGGACATGTTCTTCTCTG
TTTCTTTCTTCATGACCTTGGCCACTGCCATCTCAAAATCTTCCTGTGTT
ACATGGATCCTTCTCTCTCTTAGAGCAAACATACCGGCTTCTGTGCACAC
AGCCTTAAGCTCCGCACCAGATGCACCATTCATCTTCTCGGCAATCTTCT
TCAAATCAATGCCACGCATTAAATTCATTCTTCTTGAATGAATTTTTAGG
ATATCAAGACGAGACTCTTCATTAGGATTTGGAAATTCAATCTTTCTGTC
AATTCGTCCTGGCCTGAGAAGAGCTTGATCGAGAATATCAATTCGATTTG
TCGCCATGAGAACCTTAATTTTGTTTGATGCTTCAAATCCATCAAGCTGG
TTGAGCAGCTCCAGCATAGTCCTCTGCACCTCACTGTCACCATTTCCGCT
GCCAGATTCCATTCGGGCAGATCCGATACTGTCAATTTCATCCATAAAAA
TGATAGACGGAGCATGTTCCCTTGCCATAACAAAAAGTTCTCTAACCATT
CTGGAGCCTTCTCCAATGTATTTCTG
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