DC900161

Overview
NameDC900161
Unique NameDC900161
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length610
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12833 contig Csv1_Contig12833:222..832. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DC900161 vs. ExPASy Swiss-Prot
Match: P2C44_ORYSJ (Probable protein phosphatase 2C 44 OS=Oryza sativa subsp. japonica GN=Os04g0609600 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.244e-11
Identity = 44/145 (30.34%), Postives = 72/145 (49.66%), Query Frame = 1 
Query:  160 LNSVLSSSSQVHADDSPASGGGLSQNGKFSYGYASSPGKRS-SMEDFYETRIDGVEGEIVGLFGVFDGHGGARAAEYVKHNLFSNLIRHPKFISDTKSAIADAYSHTDSEFLKSENNQNRDAGSTASTAILVGDRLLXAMWCSEL 591
            LN + S++    +      G     + K ++G+    GK    MED++       +   +GLF +FDGH G     Y+K NLF N+++ P F ++ + AI +AY  T+   L++   Q    GSTA TAI+V  +    MW + +
Sbjct:   41 LNMIRSATCLNSSSTDTGKGRSKQSSNKVTHGFHLVEGKSGHDMEDYHVAEYKYDKSHELGLFAIFDGHLGDSVPSYLKANLFCNILKEPIFWTNPQEAIKNAYRSTNKYILENA-KQLGPGGSTAVTAIVVDGK---DMWVANV 181
[Close]
BLAST of DC900161 vs. ExPASy Swiss-Prot
Match: P2C28_ARATH (Probable protein phosphatase 2C 28 OS=Arabidopsis thaliana GN=At2g34740 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.244e-11
Identity = 38/97 (39.18%), Postives = 57/97 (58.76%), Query Frame = 1 
Query:  286 MEDFYETRIDGVEGEIVGLFGVFDGHGGARAAEYVKHNLFSNLIRHPKFISDTKSAIADAYSHTDSEFLKSENNQNRDAGSTASTAILV-GDRLLXA 573
            MEDF       V+G  +GL+ +FDGH G+  A+Y++++LF N++  P F  + K AI  AY  TD   L  +N      GSTA TAI++ G +++ A
Sbjct:    1 MEDFIVADTKTVKGHNLGLYAIFDGHSGSDVADYLQNHLFDNILSQPDFWRNPKKAIKRAYKSTDDYIL--QNVVGPRGGSTAVTAIVIDGKKIVVA 95
The following BLAST results are available for this feature:
BLAST of DC900161 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
P2C44_ORYSJ2.244e-1130.34Probable protein phosphatase 2C 44 OS=Oryza sativa... [more]
P2C28_ARATH2.244e-1139.18Probable protein phosphatase 2C 28 OS=Arabidopsis ... [more]

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Properties
Property NameValue
Genbank descriptionDC900161 VSS Citrus sinensis cDNA clone VS27V81 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900161 ID=DC900161; Name=DC900161; organism=Citrus sinensis; type=EST; length=610bp
GATAATTCGTGACATTGAAATGATCTAACGAATGTGCAATCACCTATTGT
AACTAACCAAAACGCTGTCGCTGCTGTAGTTATTGCTTTCGTTGTTATTA
ATTTATTTTCTCTTCCGAGTGGTTAACGAATTGGAACTTGAAGCGAAACC
ATGGGGTATTTGAACTCGGTGTTGTCATCTTCAAGCCAGGTTCACGCCGA
TGATTCGCCGGCTAGCGGCGGGGGCCTTAGTCAGAACGGAAAGTTCAGCT
ACGGATATGCGAGTTCTCCTGGCAAGAGGTCTTCTATGGAAGATTTTTAT
GAGACCAGAATTGATGGCGTCGAAGGAGAGATAGTAGGCCTCTTTGGAGT
TTTTGATGGTCATGGGGGTGCACGAGCTGCTGAGTATGTGAAACACAACC
TCTTCAGCAATCTGATCAGGCATCCAAAGTTCATATCTGATACCAAATCG
GCAATAGCTGATGCATACAGCCACACAGACTCGGAATTTCTGAAGTCAGA
AAACAATCAAAACAGGGATGCTGGATCTACTGCTTCCACTGCCATCCTTG
TTGGTGATCGCTTACTTGNTGCAATGTGGTGCTCAGAGCTGTATATGCAG
GGCGGTATGC
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