DC900160

Overview
NameDC900160
Unique NameDC900160
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length718
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3416 contig Csv1_Contig3416:244..960. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900160 vs. ExPASy Swiss-Prot
Match: SCP39_ARATH (Serine carboxypeptidase-like 39 OS=Arabidopsis thaliana GN=SCPL39 PE=2 SV=1)

HSP 1 Score: 50.8322 bits (120), Expect = 4.070e-13
Identity = 37/132 (28.03%), Postives = 67/132 (50.76%), Query Frame = 1
Query:   94 CSQVISQVSREISRFVDTYDVTLDVCLPSVLL----QSKMLSQLQDKEEIDVCVEDETTKYLNRKDVQKALHAQLIGVTSWTVCSEVLKYDMQNLEIPT--IHVLGKLAKSG-IRVLVYSGDQDSVLPLTGT 468
            C  +  ++  +I + ++ Y++    C+ + L     QSK  + +   E    C       YLNR+DVQ+++H   +  T W +C+E   ++    +     + +L +L K   +RV VY+GD D+V+PLT T
Sbjct:  303 CIALSMKIDDDIKK-MNLYNILTPTCINATLTPLTNQSKECTTVLQYEP---CGMQYIAAYLNREDVQRSMHVTKLPHT-WMLCNEATGFNWNQTDYSASMLPILKELMKHDQLRVWVYTGDTDTVIPLTVT 429          

HSP 2 Score: 42.743 bits (99), Expect = 4.070e-13
Identity = 19/47 (40.43%), Postives = 27/47 (57.45%), Query Frame = 2
Query:  548 QAAGWTQVYGDILSFATIRGASHEAPLSQPRRSLALFNAFLGGKXLP 688
            Q  G+T+ Y     +AT+ GA HE PL +P+ +L LF  F+    LP
Sbjct:  452 QVGGFTEEYKGNFRYATVIGAGHEVPLYKPKAALTLFKHFIRNSPLP 498          
BLAST of DC900160 vs. ExPASy Swiss-Prot
Match: SCP20_ARATH (Serine carboxypeptidase-like 20 OS=Arabidopsis thaliana GN=SCPL20 PE=2 SV=2)

HSP 1 Score: 49.2914 bits (116), Expect = 4.071e-13
Identity = 30/102 (29.41%), Postives = 48/102 (47.06%), Query Frame = 1
Query:  238 CVEDET-TKYLNRKDVQKALHAQLIG-VTSWTVCSEVLKYDMQNLEIPTIHVLGKLAKSGIRVLVYSGDQDSVLPLTGTRTLVNGLAKEIGLNTTVPYRTWV 537
            C++D   T +LN  +++KA+H +    +  W +CS  L +      +   H    L  SG R L+YSGD D  +P TG+        K +G      +R W+
Sbjct:  353 CIDDRVATAWLNDPEIRKAIHTKEESEIGRWELCSGKLSFYHDAGSMIDFH--RNLTLSGYRALIYSGDHDMCVPFTGS----EAWTKSLGYKVIDEWRAWI 448          

HSP 2 Score: 44.2838 bits (103), Expect = 4.071e-13
Identity = 20/46 (43.48%), Postives = 29/46 (63.04%), Query Frame = 2
Query:  548 QAAGWTQVYGDILSFATIRGASHEAPLSQPRRSLALFNAFLGGKXL 685
            Q AG+TQ Y + L+F TI+GA H  P  +PR +L  ++ FL G  +
Sbjct:  452 QVAGYTQGYANNLTFLTIKGAGHTVPEYKPREALDFYSRFLEGSKI 497          
BLAST of DC900160 vs. ExPASy Swiss-Prot
Match: CBP2_WHEAT (Serine carboxypeptidase 2 OS=Triticum aestivum GN=CBP2 PE=1 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 5.488e-13
Identity = 56/199 (28.14%), Postives = 84/199 (42.21%), Query Frame = 1
Query:    1 LISDSTYDIFTRVCNYSQIRRQYASGSLTAVCSQVISQVSREISRFVDTYDVTLDVC--LPSVLLQSKMLSQLQDKE--------EIDVCVEDETTKYLNRKDVQKALHAQLIGVTS--WTVCSEVLKYDMQNLEIPTIHVLGKLAKSGIRVLVYSGDQDSVLPLTGTRTLVNGLAKEIGLNTTVPYRTWV-GRKTGCW 558
            ++SD TY      C +            +  C       + E    +D Y +   VC    S    S  LSQ +             D C E  +T Y NR+DVQ ALHA + G  +  W  CS+ +     +     + +  +L  +G+R+ V+SGD D+V+PLT TR  +  L    GL TT  +  W   ++ G W
Sbjct:  209 IVSDDTYRRLKEACLHDSFIHP------SPACDAATDVATAEQGN-IDMYSLYTPVCNITSSSSSSSSSLSQQRRSRGRYPWLTGSYDPCTERYSTAYYNRRDVQMALHANVTGAMNYTWATCSDTINTHWHDAPRSMLPIYRELIAAGLRIWVFSGDTDAVVPLTATRYSIGAL----GLPTTTSWYPWYDDQEVGGW 396          
BLAST of DC900160 vs. ExPASy Swiss-Prot
Match: CBP1_HORVU (Serine carboxypeptidase 1 OS=Hordeum vulgare GN=CBP1 PE=1 SV=4)

HSP 1 Score: 47.7506 bits (112), Expect = 1.215e-11
Identity = 28/102 (27.45%), Postives = 48/102 (47.06%), Query Frame = 1
Query:  238 CVEDET-TKYLNRKDVQKALHAQLIG-VTSWTVCSEVLKYDMQNLEIPTIHVLGKLAKSGIRVLVYSGDQDSVLPLTGTRTLVNGLAKEIGLNTTVPYRTWV 537
            C+ DE  T +L+   V+ A+HAQ +  +  W +C++ L +      +   H    L   G R +++SGD D  +P TG+        K +G      +R W+
Sbjct:  355 CMSDEVATAWLDNAAVRSAIHAQSVSAIGPWLLCTDKLYFVHDAGSMIAYHK--NLTSQGYRAIIFSGDHDMCVPFTGS----EAWTKSLGYGVVDSWRPWI 450          

HSP 2 Score: 40.817 bits (94), Expect = 1.215e-11
Identity = 18/46 (39.13%), Postives = 29/46 (63.04%), Query Frame = 2
Query:  548 QAAGWTQVYGDILSFATIRGASHEAPLSQPRRSLALFNAFLGGKXL 685
            Q +G+T+ Y   L+FATI+GA H  P  +P+ + A ++ +L G  L
Sbjct:  454 QVSGYTEGYEHGLTFATIKGAGHTVPEYKPQEAFAFYSRWLAGSKL 499          
The following BLAST results are available for this feature:
BLAST of DC900160 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
SCP39_ARATH4.070e-1328.03Serine carboxypeptidase-like 39 OS=Arabidopsis tha... [more]
SCP20_ARATH4.071e-1329.41Serine carboxypeptidase-like 20 OS=Arabidopsis tha... [more]
CBP2_WHEAT5.488e-1328.14Serine carboxypeptidase 2 OS=Triticum aestivum GN=... [more]
CBP1_HORVU1.215e-1127.45Serine carboxypeptidase 1 OS=Hordeum vulgare GN=CB... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionDC900160 VSS Citrus sinensis cDNA clone VS27V80 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900160 ID=DC900160; Name=DC900160; organism=Citrus sinensis; type=EST; length=718bp
CTGATATCAGATTCAACCTACGACATTTTCACTAGGGTGTGTAATTATTC
TCAAATACGAAGACAGTATGCGAGTGGCTCTCTTACCGCTGTCTGCTCTC
AAGTAATAAGCCAAGTTTCTAGAGAGATTAGCAGATTTGTTGACACTTAC
GATGTTACACTTGATGTCTGTTTACCCTCAGTTCTTTTACAATCTAAGAT
GCTGAGTCAACTGCAAGATAAAGAGGAAATAGATGTTTGTGTCGAAGACG
AAACAACTAAATACCTTAATCGAAAAGATGTGCAGAAGGCTCTCCATGCT
CAGCTCATAGGAGTCACCAGTTGGACTGTTTGTAGCGAAGTCCTCAAATA
TGACATGCAAAATCTTGAAATCCCTACCATTCATGTTCTAGGCAAGCTCG
CCAAGTCTGGCATCAGGGTGTTGGTTTACAGCGGAGATCAAGATTCAGTC
CTCCCGCTAACTGGTACACGGACTCTAGTAAACGGATTAGCGAAGGAAAT
CGGACTAAATACAACTGTGCCTTACAGAACCTGGGTAGGAAGGAAGACAG
GCTGCTGGATGGACACAAGTATATGGTGACATTTTATCTTTTGCAACCAT
TAGAGGTGCATCACATGAAGCTCCATTGTCGCAGCCAAGGCGATCACTTG
CCCTTTTCAATGCATTTCTAGGAGGGAAGNCACTACCTGGAGCATAATTG
CATGTTGACCAATTCATG
back to top