CN186082

Overview
NameCN186082
Unique NameCN186082
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length734
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN186082 vs. ExPASy Swiss-Prot
Match: CDKL1_MOUSE (Cyclin-dependent kinase-like 1 OS=Mus musculus GN=Cdkl1 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 8.785e-22
Identity = 54/153 (35.29%), Postives = 85/153 (55.56%), Query Frame = 1
Query:   37 VNICDFGSAKQLIA-GEANISYICSRFYRAPELIFGATEYTTSIDIWSAGCVLAELLLGQPLFPGENAVDQLVEIIKVLG--TPTREEIRCMNPNYTDFRFPQIKAHPWHKVFHKRMPPEAIDLASRLLQYSPSLRCTALEACAHPFFDELRE 486
            + +CDFG A+ L   G+    Y+ +R+YR+PEL+ G T+Y   +D+W+ GCV AELL G PL+PG++ VDQL  I K LG   P  +++  MN  ++  + P  +     ++    +   A+      L   P+ R T  +   HP+FD +RE
Sbjct:  140 IKLCDFGFARLLTGPGDYYTDYVATRWYRSPELLVGDTQYGPPVDVWAIGCVFAELLSGVPLWPGKSDVDQLYLIRKTLGDLIPRHQQVFSMNQYFSGVKIPDPEDMETLELKFPNISYSALGFLKGCLHMDPAERLTCEQLLQHPYFDSIRE 292          
BLAST of CN186082 vs. ExPASy Swiss-Prot
Match: CDK15_MOUSE (Cell division protein kinase 15 OS=Mus musculus GN=Cdk15 PE=2 SV=2)

HSP 1 Score: 103.99 bits (258), Expect = 8.785e-22
Identity = 67/176 (38.07%), Postives = 100/176 (56.82%), Query Frame = 1
Query:    7 NLLVDPLTHQVNICDFGSAK-QLIAGEANISYICSRFYRAPELIFGATEYTTSIDIWSAGCVLAELLLGQPLFPG-ENAVDQLVEIIKVLGTPTREEIRCMN--PNYTDFRFPQIKAHPWHKVFHK-RMPPEAIDLASRLLQYSPSLRCTALEACAHPFFDELREPNARLPNGRPL 519
            NLL+  L  ++ + DFG A+ + I  +   S + + +YR P+ + GATEY++ +DIW AGC+  E+  GQPLFPG  N ++QL +I +VLG PT +    ++  PNY    FP  K      V+ +    PEA DLAS++L+  P  R +A EA  H +F  L     +LP+   L
Sbjct:  227 NLLLSHLG-ELKLADFGLARAKSIPSQTYSSEVVTLWYRPPDALLGATEYSSELDIWGAGCIFIEMFQGQPLFPGVSNILEQLEKIWEVLGVPTEDTWPGVSKLPNYNPEWFPPPKPQSLQIVWDRLGGVPEAEDLASQMLKGFPRDRVSAQEALVHDYFSVLPSQLYQLPDEESL 401          
BLAST of CN186082 vs. ExPASy Swiss-Prot
Match: CDC2H_PLAVI (Cell division control protein 2 homolog OS=Plasmodium vivax GN=CRK2 PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 8.785e-22
Identity = 61/163 (37.42%), Postives = 93/163 (57.06%), Query Frame = 1
Query:    7 NLLVDPLTHQVNICDFGSAKQL-IAGEANISYICSRFYRAPELIFGATEYTTSIDIWSAGCVLAELLLGQPLFPGENAVDQLVEIIKVLGTPTREEIRCMNPNYT-----DFRFPQIKAHPWHKVFHKRMPPEAIDLASRLLQYSPSLRCTALEACAHPFFDE 477
            NLL++    ++ I DFG A+   I        + + +YRAP+++ G+ +Y+T ID+WS GC+ AE++ G+PLFPG +  DQL+ I ++LGTP  E      PN T     D  F   +  PW + F K +    IDL S++L+  P+ R TA +A  H +F E
Sbjct:  130 NLLINR-EGELKIADFGLARAFGIPVRKYTHEVVTLWYRAPDILMGSKKYSTPIDMWSVGCIFAEMVNGRPLFPGVSETDQLMRIFRILGTPNSENW----PNVTELPKYDPDFMVYEPLPW-ETFLKGLDDTGIDLLSKMLRLDPNQRITAKQALEHAYFKE 286          
BLAST of CN186082 vs. ExPASy Swiss-Prot
Match: CDC2H_PLAKH (Cell division control protein 2 homolog OS=Plasmodium knowlesi (strain H) GN=CRK2 PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 8.785e-22
Identity = 61/160 (38.12%), Postives = 92/160 (57.50%), Query Frame = 1
Query:    7 NLLVDPLTHQVNICDFGSAKQL-IAGEANISYICSRFYRAPELIFGATEYTTSIDIWSAGCVLAELLLGQPLFPGENAVDQLVEIIKVLGTPTREEIRCMN--PNYTDFRFPQIKAHPWHKVFHKRMPPEAIDLASRLLQYSPSLRCTALEACAHPFFDE 477
            NLL++    ++ I DFG A+   I        + + +YRAP+++ G+ +Y+T IDIWS GC+ AE++ G+PLFPG +  DQL+ I ++LGTP       +   P Y D  F   +  PW + F K +    IDL S++L+  P+ R TA EA  H +F E
Sbjct:  130 NLLINR-EGELKIADFGLARAFGIPVRKYTHEVVTLWYRAPDILMGSKKYSTPIDIWSVGCIFAEMVNGRPLFPGVSETDQLMRIFRILGTPNSANWPSVTELPKY-DPDFIVYEPLPW-ETFLKGLDDTGIDLLSKMLRLDPNQRITAKEALQHAYFKE 286          
BLAST of CN186082 vs. ExPASy Swiss-Prot
Match: MK14A_DANRE (Mitogen-activated protein kinase 14A OS=Danio rerio GN=mapk14a PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.147e-21
Identity = 59/174 (33.91%), Postives = 95/174 (54.60%), Query Frame = 1
Query:   34 QVNICDFGSAKQLIAGEANISYICSRFYRAPELIFGATEYTTSIDIWSAGCVLAELLLGQPLFPGENAVDQLVEIIKVLGTPTREEIRCMNPNYTDFRF----PQIKAHPWHKVFHKRMPPEAIDLASRLLQYSPSLRCTALEACAHPFFDELREPNARLPNGRPLPPLFNFKQ 543
            ++ I DFG A+     +    Y+ +R+YRAPE++     Y  ++DIWS GC++AELL G+ LFPG + ++QL +I+++ GTP    I  M P++    +    PQ+    +  VF     P+A+DL  ++L      R TA EA AHP+F +  +P+   P   P    F  ++
Sbjct:  164 ELKILDFGLARH--TDDEMTGYVATRWYRAPEIMLNWMHYNVTVDIWSVGCIMAELLTGRTLFPGTDHINQLQQIMRLTGTPPSSLISRM-PSHEARTYISSLPQMPKRNFADVF-IGANPQAVDLLEKMLVLDTDKRITAAEALAHPYFAQYHDPDDE-PEAEPFDQSFESRE 332          
BLAST of CN186082 vs. ExPASy Swiss-Prot
Match: MHK_ARATH (Serine/threonine-protein kinase MHK OS=Arabidopsis thaliana GN=MHK PE=1 SV=2)

HSP 1 Score: 103.605 bits (257), Expect = 1.147e-21
Identity = 69/188 (36.70%), Postives = 100/188 (53.19%), Query Frame = 1
Query:    7 NLLVDPLTHQVNICDFGSAKQLIAGEANISYICSRFYRAPELIFGATEYTTSIDIWSAGCVLAELLLGQPLFPGENAVDQLVEIIKVLGTP-------TREEIRCMNPNYTDFRFPQIKAHPWHKVFHKRMPPEAIDLASRLLQYSPSLRCTALEACAHPFFD-------ELREPNARLPNGRPLPPL 528
            NLLV    + + I DFG A+++ +      Y+ +R+YRAPE++  ++ YT ++D+W+ G +LAEL    PLFPGE+ +DQL +I  VLG P        +   R M+ ++T+  FPQ +             PEAIDL +RL  + P  R TA EA  HPFF         + +   RL N   LP L
Sbjct:  138 NLLVT--NNILKIADFGLAREVASMPPYTEYVSTRWYRAPEVLLQSSLYTPAVDMWAVGAILAELYALTPLFPGESEIDQLYKICCVLGKPDWTTFPEAKSISRIMSISHTE--FPQTRIAD----LLPNAAPEAIDLINRLCSWDPLKRPTADEALNHPFFSMATQASYPIHDLELRLDNMAALPNL 317          
BLAST of CN186082 vs. ExPASy Swiss-Prot
Match: HOG1_WALMU (Mitogen-activated protein kinase HOG1 (Fragment) OS=Wallemia muriae GN=HOG1 PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.147e-21
Identity = 55/155 (35.48%), Postives = 87/155 (56.13%), Query Frame = 1
Query:   37 VNICDFGSAKQLIAGEANISYICSRFYRAPELIFGATEYTTSIDIWSAGCVLAELLLGQPLFPGENAVDQLVEIIKVLGTPTREEIRCMNPNYTDFRFPQIKAHPWHKVFHKRMP---PEAIDLASRLLQYSPSLRCTALEACAHPFFDELREPN 492
            + ICDFG A+  +       Y+ +R+YRAPE++    EY +++DIWS GC+ AE++ G+P+FPG++ V QL  I ++LG+P  + I  +    T  RF           F +R P    E IDL  ++L ++P  R TA +A  HP+     +P+
Sbjct:   90 LKICDFGLAR--LQDPQMTGYVSTRYYRAPEIMLTWQEYDSAVDIWSIGCIFAEMIDGRPIFPGKDHVHQLTVITELLGSPPEDVINTITSENTR-RFVDALPKREKIPFQQRFPNANEEEIDLLEKMLDFNPKERITAADAIQHPYLAPYHDPS 241          
BLAST of CN186082 vs. ExPASy Swiss-Prot
Match: HOG1_ASPNC (Mitogen-activated protein kinase hog1 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=hog1 PE=3 SV=2)

HSP 1 Score: 103.605 bits (257), Expect = 1.147e-21
Identity = 63/161 (39.13%), Postives = 90/161 (55.90%), Query Frame = 1
Query:   37 VNICDFGSAKQLIAGEANISYICSRFYRAPELIFGATEYTTSIDIWSAGCVLAELLLGQPLFPGENAVDQLVEIIKVLGTPTREEIRCMNPNYTDFRF----PQIKAHPWHKVFHKRMPPEAIDLASRLLQYSPSLRCTALEACAH----PFFDELREPNA 495
            + ICDFG A+  I       Y+ +R+YRAPE++    +Y   +DIWSA C+ AE+L G+PLFPG++ V+Q   I ++LGTP  + I+ +    T  RF    P+ +  P    F K   P+A+DL  R+L + P  R  A EA AH    P+ D   EP A
Sbjct:  155 LKICDFGLAR--IQDPQMTGYVSTRYYRAPEIMLTWQKYDVEVDIWSAACIFAEMLEGKPLFPGKDHVNQFSIITELLGTPPDDVIQTICSENT-LRFVKSLPKRERQPLASKF-KNADPDAVDLLERMLVFDPKKRIRAGEALAHEYLAPYHDPTDEPVA 311          
BLAST of CN186082 vs. ExPASy Swiss-Prot
Match: HOG1_ARXAD (Mitogen-activated protein kinase hog1 OS=Arxula adeninivorans GN=hog1 PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.147e-21
Identity = 57/155 (36.77%), Postives = 88/155 (56.77%), Query Frame = 1
Query:   37 VNICDFGSAKQLIAGEANISYICSRFYRAPELIFGATEYTTSIDIWSAGCVLAELLLGQPLFPGENAVDQLVEIIKVLGTPTREEIRCM-NPNYTDF--RFPQIKAHPWHKVFHKRMPPEAIDLASRLLQYSPSLRCTALEACAHPFFDELREPN 492
            + ICDFG A+  I       Y+ +R+YRAPE++    +Y   +DIWSAGC+ AE+L G+PLFPG++ V Q   I ++LG P  + I  + + N  +F    P+ +  P  + F     P+A+DL  ++L + P  R  A +A AHP+     EP+
Sbjct:  155 LKICDFGLAR--IQDPQMTGYVSTRYYRAPEIMLTWQKYDVEVDIWSAGCIFAEMLRGKPLFPGKDHVHQFSIITELLGNPPDDVIETIGSENTLNFVKSLPKRERIPLSQKF-PNADPDAVDLLEKMLVFDPRKRINAADALAHPYLAPYHEPS 306          
BLAST of CN186082 vs. ExPASy Swiss-Prot
Match: CDK7_MOUSE (Cell division protein kinase 7 OS=Mus musculus GN=Cdk7 PE=1 SV=2)

HSP 1 Score: 103.605 bits (257), Expect = 1.147e-21
Identity = 70/197 (35.53%), Postives = 102/197 (51.78%), Query Frame = 1
Query:    7 NLLVDPLTHQVNICDFGSAKQLIAGEANISY---ICSRFYRAPELIFGATEYTTSIDIWSAGCVLAELLLGQPLFPGENAVDQLVEIIKVLGTPTREE--IRCMNPNYTDFR-FPQIKAHPWHKVFHKRMPPEAIDLASRLLQYSPSLRCTALEACAHPFFDELREPNARLPNGRPLPPLFNFKQELSGASPELVNK 579
            NLL+D     + + DFG AK    G  N +Y   + +R+YRAPEL+FGA  Y   +D+W+ GC+LAELLL  P  PG++ +DQL  I + LGTPT E+    C  P+Y  F+ FP +   P   +F      + ++L   L  ++P  R TA +A    +F     P       RP  P+   K+    A+P +  K
Sbjct:  142 NLLLDE-NGVLKLADFGLAKSF--GSPNRAYTHQVVTRWYRAPELLFGARMYGVGVDMWAVGCILAELLLRVPFLPGDSDLDQLTRIFETLGTPTEEQWPDMCSLPDYVTFKSFPGV---PLQHIF-IAAGDDLLELIQGLFLFNPCTRTTASQALKTKYFSNRPGPTPGCQLPRPNCPVEALKEP---ANPTVATK 328          
The following BLAST results are available for this feature:
BLAST of CN186082 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CDKL1_MOUSE8.785e-2235.29Cyclin-dependent kinase-like 1 OS=Mus musculus GN=... [more]
CDK15_MOUSE8.785e-2238.07Cell division protein kinase 15 OS=Mus musculus GN... [more]
CDC2H_PLAVI8.785e-2237.42Cell division control protein 2 homolog OS=Plasmod... [more]
CDC2H_PLAKH8.785e-2238.13Cell division control protein 2 homolog OS=Plasmod... [more]
MK14A_DANRE1.147e-2133.91Mitogen-activated protein kinase 14A OS=Danio reri... [more]
MHK_ARATH1.147e-2136.70Serine/threonine-protein kinase MHK OS=Arabidopsis... [more]
HOG1_WALMU1.147e-2135.48Mitogen-activated protein kinase HOG1 (Fragment) O... [more]
HOG1_ASPNC1.147e-2139.13Mitogen-activated protein kinase hog1 OS=Aspergill... [more]
HOG1_ARXAD1.147e-2136.77Mitogen-activated protein kinase hog1 OS=Arxula ad... [more]
CDK7_MOUSE1.147e-2135.53Cell division protein kinase 7 OS=Mus musculus GN=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0002F10_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002F10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186082 ID=CN186082; Name=CN186082; organism=Citrus sinensis; type=EST; length=734bp
AGTGTAAACCTTTTGGTTGATCCTCTTACTCACCAGGTTAACATTTGTGA
TTTTGGAAGTGCAAAACAGCTGATTGCTGGAGAAGCAAACATATCATACA
TATGTTCACGTTTCTATCGGGCTCCAGAACTTATATTTGGAGCTACAGAA
TATACAACCTCAATTGATATATGGTCAGCTGGTTGTGTGCTTGCCGAGCT
TCTTTTGGGCCAGCCATTATTTCCTGGAGAAAATGCAGTGGACCAGCTTG
TAGAGATTATCAAGGTTCTCGGTACACCCACTCGTGAAGAAATTCGCTGT
ATGAATCCAAATTATACCGATTTTAGGTTTCCACAGATTAAAGCACATCC
TTGGCACAAGGTTTTCCACAAACGGATGCCTCCTGAGGCTATTGATCTTG
CTTCACGCCTGTTGCAGTATTCACCAAGTCTCCGATGTACAGCGCTAGAA
GCATGTGCACATCCTTTCTTTGATGAACTGCGTGAGCCAAATGCTCGCCT
ACCAAATGGCCGCCCACTGCCACCTCTCTTCAACTTTAAACAGGAATTAT
CGGGGGCTTCACCAGAGCTTGTTAATAAGTTGATACCAGACCATGTGAAA
CGGCAATTAGGTCTGAATTTCTTGCATCCAGCCGGGACATAGGTCTAGAC
AAGTAATATAGAAGTGAAATCTACTTGGTGATGTGTAGCACAAAGGGAAT
TATATCCTTGTTCGTAACTGCCATGCATTGAGGC
back to top