CN186080

Overview
NameCN186080
Unique NameCN186080
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length708
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN186080 vs. ExPASy Swiss-Prot
Match: TRPD_ACTP7 (Anthranilate phosphoribosyltransferase OS=Actinobacillus pleuropneumoniae serotype 7 (strain AP76) GN=trpD PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.234e-25
Identity = 70/179 (39.11%), Postives = 99/179 (55.31%), Query Frame = 2
Query:  179 NELIDCLISRVDLTEAEAQASLDYLL--NEADEALISAFLVLLRAKGETFGEIVGLARAMIKYAAKVEGLGDA-VDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGP 706
            + ++  L     LT+AE+Q   + ++  N ++E L  A L+ L+ +GET  EI G   A    A        A  DIVGTGGDG NT+NIST ++I+AA  G KVAK             DVL ALG+ + + P+  R+ +DE  + F+ +  YH   K   PVR+ LK +T+FNILGP
Sbjct:    4 DNILSQLFENQALTKAESQYFFEQVIQGNVSNEQLAGA-LIALKVRGETIEEIAGAVEAAFANATAFPAPDYAFADIVGTGGDGQNTINISTASAIVAATLGYKVAKHGSRSVSSKTGASDVLSALGINVAISPQTARQALDENNLCFLFAPLYHAGFKHAVPVRQVLKTRTLFNILGP 181          
BLAST of CN186080 vs. ExPASy Swiss-Prot
Match: TRPD_SYNWW (Anthranilate phosphoribosyltransferase OS=Syntrophomonas wolfei subsp. wolfei (strain Goettingen) GN=trpD PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.612e-25
Identity = 65/178 (36.52%), Postives = 100/178 (56.18%), Query Frame = 2
Query:  176 FNELIDCLISRVDLTEAEAQASLDYLLNE-ADEALISAFLVLLRAKGETFGEIVGLARAMIKYAAKVEGLGDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGP 706
            F+  +  ++    L   EA  +   LL+E   E   +AFL  LR + E+  E+ G  +A+ + A  V+   + +D  GTGGDG  T NIST ++++ A+CG  VAK             DVLEALGV + L+P+  R+ +D+AGI F+ +  YHP +K V  +R+ L + T+FN +GP
Sbjct:    2 FDRYLKSVVEGDYLNSEEAYLTARMLLHEDIPEIKAAAFLSALRTRKESQEELTGFVQALYEEAKMVDCGMEVLDTCGTGGDGLGTFNISTASALVVASCGVAVAKHGNRAVTGKVGSADVLEALGVEVQLEPDEARQLLDKAGITFLFAPHYHPILKQVGGLRRGLGIATIFNFMGP 179          
BLAST of CN186080 vs. ExPASy Swiss-Prot
Match: TRPD_SYNP6 (Anthranilate phosphoribosyltransferase OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=trpD PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.612e-25
Identity = 73/186 (39.25%), Postives = 101/186 (54.30%), Query Frame = 2
Query:  170 PCFNE---LIDCLISRVDLTEAEAQASLD-YLLNEADEALISAFLVLLRAKGETFGEIVGLARAMIKYAAKVEGLG---DAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGP 706
            P F E   L+  L++   L   +A+A ++ +      EAL  A L  L++KG +  E+  +A+ + + A  VE        VD  GTGGDGA T NIST  + + AA G KVAK             DVLEALG+ +    + +   VDE GI F+ +  +HPAMK V P+RK L V+TVFN+LGP
Sbjct:    6 PAFAEAQVLLQRLLNHESLGAVQARALMEQWSSGTLPEALSGALLAALQSKGVSAQELAAMAQVLQEQAVAVEASDRREPLVDTCGTGGDGAETFNISTAVAFVTAAAGVKVAKHGNRSASGRVGSADVLEALGLNLTAPSDRIHAAVDEVGITFLFAPGWHPAMKAVAPLRKILGVRTVFNLLGP 191          
BLAST of CN186080 vs. ExPASy Swiss-Prot
Match: TRPD_STRT2 (Anthranilate phosphoribosyltransferase OS=Streptococcus thermophilus (strain ATCC BAA-250 / LMG 18311) GN=trpD PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.612e-25
Identity = 65/170 (38.24%), Postives = 100/170 (58.82%), Query Frame = 2
Query:  203 SRVDLTEAEAQASLDYLL-NEADEALISAFLVLLRAKGETFGEIVGLARAMIKYAAKV-EGLGDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGP 706
            +R DL++ + Q   D +L NE  E+ I++FL+ L+ KGET  EI G+ RA+  +A  + E   DA+   GTGGD + + NIST A  + AA G ++AK             DVLE LG+ +   PE + + +DE G+ F+ +   HPAM+F+ P R+ L + T+ N++GP
Sbjct:   10 NRQDLSQDQVQVVFDRILKNEVSESQIASFLMGLKIKGETSDEITGIVRALKSHATVLPETFTDAMCNCGTGGDQSYSFNISTTACFVLAAGGIRMAKAGNRSISSKSGSADVLEVLGINVAASPEILSKALDEVGLAFIFAQTMHPAMRFIGPARQALGIPTIMNLVGP 179          
BLAST of CN186080 vs. ExPASy Swiss-Prot
Match: TRPD_SORC5 (Anthranilate phosphoribosyltransferase OS=Sorangium cellulosum (strain So ce56) GN=trpD PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.612e-25
Identity = 70/179 (39.11%), Postives = 96/179 (53.63%), Query Frame = 2
Query:  185 LIDCLISRVDLTEAEAQASL-DYLLNEADEALISAFLVLLRAKGETFGEIVGLARAM----IKYAAKVEGLGDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGP 706
            +ID L + VDL+  + +A   D +     E  +SA  V L+AKGET  EI G ARA+    + +A       D     GTGGDG +TVN+ST  + +AA  G  VAK             D LEALG  +D   E  RR +DE G  F+ + +YH  ++   PVR+ LKV+T+ N+LGP
Sbjct:    5 VIDALCAGVDLSAEQTEALFRDLIAGALTEIELSALFVALKAKGETPAEIAGAARALRGTSVPFARPAYVYADCC---GTGGDGQSTVNVSTAVAFVAAEAGLPVAKHGNRSVSSQCGSADALEALGARLDPPAEVSRRALDEVGFCFLFAPQYHAGLRHAMPVRRALKVRTIMNLLGP 180          
BLAST of CN186080 vs. ExPASy Swiss-Prot
Match: TRPD_SHELP (Anthranilate phosphoribosyltransferase OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=trpD PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.612e-25
Identity = 65/181 (35.91%), Postives = 100/181 (55.25%), Query Frame = 2
Query:  185 LIDCLISRVDLTEAEAQASLDYLLN-EADEALISAFLVLLRAKGETFGEIVGLARAMIKYAAKVEGLGDA------VDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGP 706
            + D L     ++  E +A    ++  + D   ++  LV ++ +GET  EI G A A+++ A       +A      VDIVGTGGDG NT+NIST ++ +AAA GAKVAK             D+L   G+ + + PE  R C+D+ G+ F+ +  YH  ++   PVR+ LK +T+FN+LGP
Sbjct:    7 IFDRLYQGQTISREETKALFSEIVEGKMDPVAMAGMLVAMKMRGETIDEISGAADALLQAAKAFPAPSEATRTQGIVDIVGTGGDGHNTINISTTSAFVAAAAGAKVAKHGNRSVSSKSGSSDLLAQFGIDLTMAPETARDCLDDLGLCFLFAPHYHGGVRHAVPVRQALKTRTLFNVLGP 187          
BLAST of CN186080 vs. ExPASy Swiss-Prot
Match: TRPD_SHEB5 (Anthranilate phosphoribosyltransferase OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) GN=trpD PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.612e-25
Identity = 75/196 (38.27%), Postives = 102/196 (52.04%), Query Frame = 2
Query:  149 IDTRPQTPCFNELIDCLISRVDLTEAEAQASLDYLLN-EADEALISAFLVLLRAKGETFGEIVGLARAMIKYAAKVEGLGDA---------VDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGP 706
            + T P  P    L+D L     L+  +       L+  E  EA ++  LV L+ +GET  EI G A AM + AAK     +          VDIVGTGGDG NT+NIST A+ +AAA GAKVAK             D+L   G+ + + PE   RC+D   + F+ +  YH  +K   PVR+ LK +T+FN+LGP
Sbjct:    1 MSTNPIQP----LLDVLYQGKSLSREQTAELFGALIRGEMSEAAMAGMLVALKMRGETIDEISGAADAM-RAAAKPFPCPERNNNPLHNGIVDIVGTGGDGFNTINISTTAAFVAAAAGAKVAKHGNRSVSSKSGSSDLLAQFGIDLTMSPETASRCLDALNLCFLFAPHYHGGVKHAVPVRQALKTRTLFNVLGP 191          
BLAST of CN186080 vs. ExPASy Swiss-Prot
Match: TRPD_MARMM (Anthranilate phosphoribosyltransferase OS=Maricaulis maris (strain MCS10) GN=trpD PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.612e-25
Identity = 68/163 (41.72%), Postives = 92/163 (56.44%), Query Frame = 2
Query:  221 EAEAQASLDYLLN-EADEALISAFLVLLRAKGETFGEIVGLARAMIKYAAKVEGLGDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGP 706
            +A    + D L++ +A +A I  FLV L A GE   +I   ARA+     ++E    A+D  GTGGDG    NIST A+I+AA  GA VAK             DVL  LGV +D  P  V R + EA +GF+ +  +H A++ V P R+ LKV+TVFN+LGP
Sbjct:   19 DAAIAGAFDELMSGDAPDAAIGGFLVGLAALGERPSDIAAGARALRSRMTRIEAPVGAIDTCGTGGDGKGAWNISTTAAIIAAGAGATVAKHGNRAASSKSGSSDVLAQLGVKLDCPPAAVERSLAEARVGFLFAPAHHAAVRHVGPARQALKVRTVFNLLGP 181          
BLAST of CN186080 vs. ExPASy Swiss-Prot
Match: TRPD_JANSC (Anthranilate phosphoribosyltransferase OS=Jannaschia sp. (strain CCS1) GN=trpD PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.612e-25
Identity = 63/165 (38.18%), Postives = 93/165 (56.36%), Query Frame = 2
Query:  215 LTEAEAQASLDYLLNE-ADEALISAFLVLLRAKGETFGEIVGLARAMIKYAAKVEGLGDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGP 706
            L+ A+A+ + + +    A  A +   ++ +RA+GE+  E    A+ M     KV     A+DIVGTGGDG  T+NIST  + + A  G  VAK             DVL  +G+ + +    V + + EAGIGFMM+  +HPA+K V P+R++L  KT+FNILGP
Sbjct:   22 LSRAQAEEAFNLMFEGLASPAQMGGLIMAIRARGESVAEYAAAAQVMRDRCVKVSAPDGAMDIVGTGGDGMGTLNISTATAFVVAGAGVPVAKHGNRNLSSKSGAADVLTQMGINVMVGAAVVEQSLKEAGIGFMMAPMHHPAVKHVMPIRQELGCKTIFNILGP 186          
BLAST of CN186080 vs. ExPASy Swiss-Prot
Match: TRPD_CORDI (Anthranilate phosphoribosyltransferase OS=Corynebacterium diphtheriae GN=trpD PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.612e-25
Identity = 67/178 (37.64%), Postives = 99/178 (55.62%), Query Frame = 2
Query:  179 NELIDCLISRVDLTEAEAQASLDYLLNEADEALISAFLVLLRAKGETFGEIVGLARAMIKYAAK--VEGLGDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGP 706
            N LI  L +     E   +      + + D+  I+A L  +R +GET+ +I G A+A +       + G G  +D  GTGGDGANT+N++T AS++AAA G K+ K             DVLEAL + +DL+P+   R  + +   F+ +  Y+PA+  V+PVRK LKV T+FN LGP
Sbjct:    8 NNLIAYLDNPHPTVEQAIEVFTPLTVGDYDDVHIAALLATIRTRGETYADIAGAAKAFLAAGRPFPITGAG-LMDSAGTGGDGANTINVTTAASLVAAAGGVKMVKCGNRSVSSKSGSADVLEALNIPLDLNPDRAVRQFNASNFTFLFAPAYNPAVAHVQPVRKALKVPTLFNTLGP 184          
The following BLAST results are available for this feature:
BLAST of CN186080 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TRPD_ACTP71.234e-2539.11Anthranilate phosphoribosyltransferase OS=Actinoba... [more]
TRPD_SYNWW1.612e-2536.52Anthranilate phosphoribosyltransferase OS=Syntroph... [more]
TRPD_SYNP61.612e-2539.25Anthranilate phosphoribosyltransferase OS=Synechoc... [more]
TRPD_STRT21.612e-2538.24Anthranilate phosphoribosyltransferase OS=Streptoc... [more]
TRPD_SORC51.612e-2539.11Anthranilate phosphoribosyltransferase OS=Sorangiu... [more]
TRPD_SHELP1.612e-2535.91Anthranilate phosphoribosyltransferase OS=Shewanel... [more]
TRPD_SHEB51.612e-2538.27Anthranilate phosphoribosyltransferase OS=Shewanel... [more]
TRPD_MARMM1.612e-2541.72Anthranilate phosphoribosyltransferase OS=Maricaul... [more]
TRPD_JANSC1.612e-2538.18Anthranilate phosphoribosyltransferase OS=Jannasch... [more]
TRPD_CORDI1.612e-2537.64Anthranilate phosphoribosyltransferase OS=Coryneba... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0002F09_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002F09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186080 ID=CN186080; Name=CN186080; organism=Citrus sinensis; type=EST; length=708bp
AGGGTTTCTTCCTCTCCATTTAATAATAATCACCCAAACCACCGGCCTTT
CTTACCGTCGCTTGGGAACTGTGGATTTACGACTGCGGGTAATAATCCGA
GATGCAGAGAATTAACTGCTATTCAAACCCCTCAGCCGGCTGTTTCTGAT
AGATACTCGTCCTCAAACGCCCTGCTTTAATGAGTTGATCGATTGCTTGA
TAAGTCGAGTGGATTTAACGGAGGCGGAGGCTCAAGCTTCGCTGGATTAC
TTGTTGAATGAAGCTGATGAGGCCTTGATTAGTGCTTTTCTTGTTTTGCT
CAGAGCCAAAGGAGAAACATTTGGAGAGATTGTGGGATTGGCCAGGGCGA
TGATAAAGTATGCTGCGAAGGTGGAAGGGCTGGGTGATGCAGTTGACATT
GTGGGTACAGGAGGTGATGGTGCAAACACAGTGAACATTTCAACTGGTGC
TTCAATTCTTGCCGCAGCTTGTGGTGCAAAAGTTGCCAAGCAAGGGAGTC
GGTCTAGTTCTTCTGCATGTGGAAGTGCTGATGTGTTAGAAGCTTTGGGT
GTCGTTATTGACTTGGACCCAGAGGGTGTAAGAAGGTGTGTGGATGAGGC
AGGAATTGGTTTCATGATGTCGACAAAGTATCACCCTGCAATGAAGTTTG
TCAGGCCAGTGAGGAAAAAGCTCAAAGTAAAAACTGTATTCAATATATTG
GGTCCTAT
back to top