CN186080

Overview
NameCN186080
Unique NameCN186080
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length708
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig378 contig Csv1_Contig378:145..851. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN186080 vs. ExPASy Swiss-Prot
Match: TRPD_LACC3 (Anthranilate phosphoribosyltransferase OS=Lactobacillus casei (strain ATCC 334) GN=trpD PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.319e-27
Identity = 71/176 (40.34%), Postives = 103/176 (58.52%), Query Frame = 2
Query:  182 ELIDCLISRVDLTEAEAQASLDYLLN-EADEALISAFLVLLRAKGETFGEIVGLARAMIKYAAKVEGLGDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGP 706
            + I+ +++  +LT  E++A LD ++N EA E   ++ L  L AK  T  EI G A +M  +A       D ++IVGTGGD ANT NIST ++I+ AA G +VAK             DVLEALG+ I+  P      + E  + F+ + +YH +MK+V  VRK+L  +T+FNILGP
Sbjct:    4 QAIEKVVNHENLTFEESEAVLDEIMNGEASEVQTASLLTALTAKNPTIDEIAGAAASMRSHALAFPETKDVLEIVGTGGDHANTFNISTTSAIVVAATGTQVAKHGNRAASSKSGAADVLEALGLDINETPAVSYESLQENNLAFLFAQEYHKSMKYVATVRKQLGFRTIFNILGP 179          
BLAST of CN186080 vs. ExPASy Swiss-Prot
Match: TRPD_HAHCH (Anthranilate phosphoribosyltransferase OS=Hahella chejuensis (strain KCTC 2396) GN=trpD PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.319e-27
Identity = 70/173 (40.46%), Postives = 101/173 (58.38%), Query Frame = 2
Query:  197 LISRVDLTEAEAQASLDYLLN-EADEALISAFLVLLRAKGETFGEIVGLARAMIKYAAKVEGLGDA--VDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGP 706
            ++ R DLT  E    +  ++  +A  A I  FLV LR K E+ GEI G A+ M + A+KV+ + D   VD  GTGGDG+N  N+ST A+ + AA G KVAK             DVLEA G+ +D+  E V R + E G+GF+ +  +H AMK     R+++ ++T+FN+LGP
Sbjct:   10 VVDRKDLTTEEMIEVMQQIMTGQATPAQIGGFLVALRFKSESVGEITGAAQVMRQLASKVD-IDDPHLVDTCGTGGDGSNLFNVSTAAAFVVAAAGGKVAKHGNRSVSSRSGSADVLEAAGINLDMTAEQVARAIKEIGVGFLFAPAHHSAMKHAIGPRREMGIRTIFNMLGP 181          
BLAST of CN186080 vs. ExPASy Swiss-Prot
Match: TRPD_COLP3 (Anthranilate phosphoribosyltransferase OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) GN=trpD PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.319e-27
Identity = 69/180 (38.33%), Postives = 99/180 (55.00%), Query Frame = 2
Query:  179 NELIDCLISRVDLTEAEAQASLDYLLN-EADEALISAFLVLLRAKGETFGEIVGLARAMIKYAAKVEGLGD---AVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGP 706
            N ++  L+  +DL + ++      +L    D AL+++ L  L+ KGET  EI G A A+   A             D VGTGGDGANT+NIST A++LAAACG K+AK             D+LEA GV + + PE    C+ +  + F+ +  YH   K+  PVRK + ++T+FNILGP
Sbjct:   17 NTILPTLVDGLDLNQRQSHDFFQQVLQGNIDPALMASVLTALKIKGETPEEIAGAAIAIRAAATPFPERNKEDIVADCVGTGGDGANTINISTTAAVLAAACGLKMAKHGNRSVSSMSGSADLLEAFGVNLSMSPETANHCLAQTNLCFLYAPAYHSGFKYAGPVRKAMGIRTLFNILGP 196          
BLAST of CN186080 vs. ExPASy Swiss-Prot
Match: TRPD_BORA1 (Anthranilate phosphoribosyltransferase OS=Bordetella avium (strain 197N) GN=trpD PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.319e-27
Identity = 69/151 (45.70%), Postives = 89/151 (58.94%), Query Frame = 2
Query:  260 EADEALISAFLVLLRAKGETFGEIVGLARAMIKYAAKV--EGLGDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGP 706
            E    + SA L+ LR K ET GEI   A+ M ++A  V      D +D+ GTGGDG++T NIST A  +AAA G  +AK             DVLEALG  + L P+ V  C++  GIGFM +  +H AMK V  VRK+L V+T+FNILGP
Sbjct:   34 EMSPQIASALLMGLRVKKETVGEITAAAQVMREFATPVVTPNPQDLLDMCGTGGDGSHTFNISTTAMFVAAAVGVPIAKHGNRSASSSSGSADVLEALGANLQLSPQAVAECIEATGIGFMFAPAHHGAMKNVAAVRKELGVRTIFNILGP 184          
BLAST of CN186080 vs. ExPASy Swiss-Prot
Match: TRPD_AZOSB (Anthranilate phosphoribosyltransferase OS=Azoarcus sp. (strain BH72) GN=trpD PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.319e-27
Identity = 70/155 (45.16%), Postives = 87/155 (56.13%), Query Frame = 2
Query:  251 LLNEADEALISAFLVLLRAKGETFGEIVGLARAMIKYAAKV---EGLGDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGP 706
            +  E    + +A L  LR K ET GEI   A  M + A KV         +D+VGTGGDG++T NIST    + AA GA+VAK             D LEALG  I L PE V  CV   GIGFM +  +H AMK V PVR+++ V+T+FNILGP
Sbjct:   31 MAGEVSPVMTAAILTGLRVKKETIGEITAAATVMRELATKVVVPPPHDHFIDVVGTGGDGSHTFNISTATIFVTAAAGARVAKHGNRSVSSKSGSADALEALGANIMLTPEQVAECVQATGIGFMFAPSHHSAMKNVAPVRREMGVRTIFNILGP 185          
BLAST of CN186080 vs. ExPASy Swiss-Prot
Match: TRPD_AERS4 (Anthranilate phosphoribosyltransferase OS=Aeromonas salmonicida (strain A449) GN=trpD PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.319e-27
Identity = 61/150 (40.67%), Postives = 92/150 (61.33%), Query Frame = 2
Query:  260 EADEALISAFLVLLRAKGETFGEIVGLARAMIKYAAKVEGLG-DAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGP 706
            E D  ++++ L  L+ KGET  EI G A A++  A        +  DIVGTGGDG NT+N+ST ++++AAACG KVAK             D+L+ +G+ +D+ P   R C+D+ GI F+ + +YH  ++   PVR+ LK +T+FN+LGP
Sbjct:   30 EVDPIVLASLLTALKIKGETPEEIAGAAEALLAEARDFPRPDYEFCDIVGTGGDGLNTINVSTTSALVAAACGLKVAKHGNRSVSSKSGSSDLLDKMGIKLDMSPAQARHCLDKLGICFLFAPQYHAGVRHAMPVRQALKTRTLFNVLGP 179          
BLAST of CN186080 vs. ExPASy Swiss-Prot
Match: TRPD_RHOSK (Anthranilate phosphoribosyltransferase OS=Rhodobacter sphaeroides (strain KD131 / KCTC 12085) GN=trpD PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.722e-27
Identity = 69/165 (41.82%), Postives = 91/165 (55.15%), Query Frame = 2
Query:  215 LTEAEAQASLDYLLN-EADEALISAFLVLLRAKGETFGEIVGLARAMIKYAAKVEGLGDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGP 706
            L+  EA+ + + L   EA  A +   L+ LR +GET  E    A  M     KV     A+DIVGTGGDG  T+NIST  + + A  G  VAK             D L  +G+ + + PE V  C+ EAGIGFMM+  +HPAM+ V PVR +L  +T+FNILGP
Sbjct:   17 LSREEAEFAFECLFEGEATPAQMGGLLMALRTRGETVDEYAAAASVMRAKCHKVRAPHGAIDIVGTGGDGKGTLNISTATAFVVAGAGVPVAKHGNRNLSSKSGAADALTEMGLNVMIGPEQVEACLLEAGIGFMMAPMHHPAMRHVGPVRAELGTRTIFNILGP 181          
BLAST of CN186080 vs. ExPASy Swiss-Prot
Match: TRPD_RHOS4 (Anthranilate phosphoribosyltransferase OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=trpD PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.722e-27
Identity = 69/165 (41.82%), Postives = 91/165 (55.15%), Query Frame = 2
Query:  215 LTEAEAQASLDYLLN-EADEALISAFLVLLRAKGETFGEIVGLARAMIKYAAKVEGLGDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGP 706
            L+  EA+ + + L   EA  A +   L+ LR +GET  E    A  M     KV     A+DIVGTGGDG  T+NIST  + + A  G  VAK             D L  +G+ + + PE V  C+ EAGIGFMM+  +HPAM+ V PVR +L  +T+FNILGP
Sbjct:   17 LSREEAEFAFECLFEGEATPAQMGGLLMALRTRGETVDEYAAAASVMRAKCHKVRAPHGAIDIVGTGGDGKGTLNISTATAFVVAGAGVPVAKHGNRNLSSKSGAADALTEMGLNVMIGPEQVEACLLEAGIGFMMAPMHHPAMRHVGPVRAELGTRTIFNILGP 181          
BLAST of CN186080 vs. ExPASy Swiss-Prot
Match: TRPD_METJA (Anthranilate phosphoribosyltransferase OS=Methanocaldococcus jannaschii GN=trpD PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.722e-27
Identity = 72/177 (40.68%), Postives = 102/177 (57.63%), Query Frame = 2
Query:  182 ELIDCLISRVDLTEAEAQASL-DYLLNEADEALISAFLVLLRAKGETFGEIVGLARAMIKYAAKVE-GLGDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGP 706
            E +  +I   DL E EA+A + D +   A    I+A L  LR KGET  EI   A+ M +++ K+   +   +D  GTGGD  NT NIST  + + +A    VAK             DVLEALGV +++  E V+  +++ GIGF+ +  +HPAMKF  PVRK+L ++TVFN+LGP
Sbjct:    4 EALKKVIEFKDLDEKEAEAVMKDIMSGNAKPTQIAAILTALRMKGETIEEITAFAKIMREFSLKINPNVPKLLDTCGTGGDNLNTFNISTATAFVVSAY-VPVAKHGNKAVSSKSGSADVLEALGVNLNVPIERVKESIEKIGIGFLFAPHFHPAMKFATPVRKELGIRTVFNVLGP 179          
BLAST of CN186080 vs. ExPASy Swiss-Prot
Match: TRPD_META3 (Anthranilate phosphoribosyltransferase OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=trpD PE=3 SV=2)

HSP 1 Score: 122.865 bits (307), Expect = 1.722e-27
Identity = 72/175 (41.14%), Postives = 106/175 (60.57%), Query Frame = 2
Query:  185 LIDCLISRVDLTEAEAQASLDYLLNEADEALISAFLVLLRAKGETFGEIVGLARAMIKYAAKVEGLGDAV-DIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGP 706
            +++ +I+R DL+  E+    + LLNE+ E  I A+L  L+ KG T  EI G A+AM   A  ++ LG  + D  GTGGDG +T+NIST  SI+ + C  KVAK             +VL+AL +  D +PE  ++ +D+    F+ +  YHPA+K + PVRK+L +KT+FNILGP
Sbjct:    1 MLNKIINREDLSYEESYDLFNDLLNES-EIKIGAYLSALQTKGFTANEIAGFAKAMRDNAIAID-LGKGISDTCGTGGDGYSTINISTAVSIILS-CFTKVAKHGNVSITSKSGSANVLDALNIKKDCNPEEAKKMIDKTNFVFLFAPNYHPALKKIMPVRKELGIKTIFNILGP 172          
The following BLAST results are available for this feature:
BLAST of CN186080 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TRPD_LACC31.319e-2740.34Anthranilate phosphoribosyltransferase OS=Lactobac... [more]
TRPD_HAHCH1.319e-2740.46Anthranilate phosphoribosyltransferase OS=Hahella ... [more]
TRPD_COLP31.319e-2738.33Anthranilate phosphoribosyltransferase OS=Colwelli... [more]
TRPD_BORA11.319e-2745.70Anthranilate phosphoribosyltransferase OS=Bordetel... [more]
TRPD_AZOSB1.319e-2745.16Anthranilate phosphoribosyltransferase OS=Azoarcus... [more]
TRPD_AERS41.319e-2740.67Anthranilate phosphoribosyltransferase OS=Aeromona... [more]
TRPD_RHOSK1.722e-2741.82Anthranilate phosphoribosyltransferase OS=Rhodobac... [more]
TRPD_RHOS41.722e-2741.82Anthranilate phosphoribosyltransferase OS=Rhodobac... [more]
TRPD_METJA1.722e-2740.68Anthranilate phosphoribosyltransferase OS=Methanoc... [more]
TRPD_META31.722e-2741.14Anthranilate phosphoribosyltransferase OS=Methanoc... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0002F09_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002F09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186080 ID=CN186080; Name=CN186080; organism=Citrus sinensis; type=EST; length=708bp
AGGGTTTCTTCCTCTCCATTTAATAATAATCACCCAAACCACCGGCCTTT
CTTACCGTCGCTTGGGAACTGTGGATTTACGACTGCGGGTAATAATCCGA
GATGCAGAGAATTAACTGCTATTCAAACCCCTCAGCCGGCTGTTTCTGAT
AGATACTCGTCCTCAAACGCCCTGCTTTAATGAGTTGATCGATTGCTTGA
TAAGTCGAGTGGATTTAACGGAGGCGGAGGCTCAAGCTTCGCTGGATTAC
TTGTTGAATGAAGCTGATGAGGCCTTGATTAGTGCTTTTCTTGTTTTGCT
CAGAGCCAAAGGAGAAACATTTGGAGAGATTGTGGGATTGGCCAGGGCGA
TGATAAAGTATGCTGCGAAGGTGGAAGGGCTGGGTGATGCAGTTGACATT
GTGGGTACAGGAGGTGATGGTGCAAACACAGTGAACATTTCAACTGGTGC
TTCAATTCTTGCCGCAGCTTGTGGTGCAAAAGTTGCCAAGCAAGGGAGTC
GGTCTAGTTCTTCTGCATGTGGAAGTGCTGATGTGTTAGAAGCTTTGGGT
GTCGTTATTGACTTGGACCCAGAGGGTGTAAGAAGGTGTGTGGATGAGGC
AGGAATTGGTTTCATGATGTCGACAAAGTATCACCCTGCAATGAAGTTTG
TCAGGCCAGTGAGGAAAAAGCTCAAAGTAAAAACTGTATTCAATATATTG
GGTCCTAT
back to top