CN186080

Overview
NameCN186080
Unique NameCN186080
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length708
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig378 contig Csv1_Contig378:145..851. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN186080 vs. ExPASy Swiss-Prot
Match: TRPD_BLOPB (Anthranilate phosphoribosyltransferase OS=Blochmannia pennsylvanicus (strain BPEN) GN=trpD PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.971e-23
Identity = 58/177 (32.77%), Postives = 105/177 (59.32%), Query Frame = 2
Query:  182 ELIDCLISRVDLTEAEAQASLDYLLNEADEAL-ISAFLVLLRAKGETFGEIVGLARAMIKYAAKVEGLGDA-VDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGP 706
            +++D L    ++ + +++A L  ++ E   A+ I++ L+ ++ +GETF EI+G    ++ +A           DI GTGGD +NT+NIST ++I+AA CGAK+ K             D+L+   ++++  P+  R+  DE GI F+ + +Y+  +  + P+RK+LK+ T+FNI+GP
Sbjct:    3 KILDTLYQGKNINQKQSEALLHSIIKEKLSAIQIASALISMKIRGETFEEIIGAVNILLTHAKPFPRPNSLFADITGTGGDNSNTINISTTSAIVAATCGAKIIKHGNRSISSLTGSMDLLKQHCLILN-SPQQARKNFDELGICFLYAPQYYTVLHRIMPIRKQLKIPTLFNIVGP 178          
BLAST of CN186080 vs. ExPASy Swiss-Prot
Match: TRPD_LISMH (Anthranilate phosphoribosyltransferase OS=Listeria monocytogenes serotype 4a (strain HCC23) GN=trpD PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.574e-23
Identity = 59/144 (40.97%), Postives = 88/144 (61.11%), Query Frame = 2
Query:  278 ISAFLVLLRAKGETFGEIVGLARAMIKYAAKVE-GLGDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGP 706
            I+AFL+ L+ KGET  E+ G+A+AM + A +V    G A+D  GTGGD +N+ NIST ++ + AA G  VAK             DV + LG+ I++ PE +   +++ GI F+ +   HP MK+V  VRK+L   T+FN++GP
Sbjct:   36 IAAFLMALKVKGETAEEMAGIAQAMQQVAIQVAFPAGTAMDNCGTGGDKSNSFNISTTSAFVLAAAGIPVAKHGNRSISSRSGSADVCQELGIDINMRPEDMTYLLEKVGIAFLFAPHVHPNMKYVMDVRKELGTPTIFNLIGP 179          
BLAST of CN186080 vs. ExPASy Swiss-Prot
Match: TRPD_HELPH (Anthranilate phosphoribosyltransferase OS=Helicobacter pylori (strain HPAG1) GN=trpD PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.574e-23
Identity = 60/177 (33.90%), Postives = 97/177 (54.80%), Query Frame = 2
Query:  182 ELIDCLISRVDLTEAEAQASLDYLLNE-ADEALISAFLVLLRAKGETFGEIVGLARAMIKYAAKVEGLG-DAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGP 706
            E+++ L  + DL + E +     +++E      +   L  L+ KGE+F EI   A  ++++A K    G D +D  GTGGDG  T+N+ST A+++A++ G  +AK             D+LE LGV I+++P  +  C  +   GF+ +  YH + K   P+RK+L  KT+FN LGP
Sbjct:    3 EILNALYHQKDLNDEEVKKLFTLIIHEKVSPVQLGTILCALKIKGESFKEISVAATTLLEHAPKPFDSGLDLIDNCGTGGDGLKTINVSTIAALIASSMGLSMAKHGSRSVSSHSGSADLLENLGVNIEMNPTQLENCFKQTHFGFLFAPLYHQSFKKSAPLRKELFTKTIFNCLGP 179          
BLAST of CN186080 vs. ExPASy Swiss-Prot
Match: TRPD_SPHAL (Anthranilate phosphoribosyltransferase OS=Sphingopyxis alaskensis GN=trpD PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.361e-23
Identity = 61/159 (38.36%), Postives = 87/159 (54.72%), Query Frame = 2
Query:  230 AQASLDYLLNEADEALISAFLVLLRAKGETFGEIVGLARAMIKYAAKVEGLGDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGP 706
            A A    L   A +  I+AFLV L  +GET  EI   A+AM      +E    A+D+ GTGGDG +T+N+ST  SI+ AAC   VAK             D LEALG+ ++      +  + + GI F+ +   HPAMK + P+RK +  +T+FN++GP
Sbjct:   20 AHAFATMLDGGARDEQIAAFLVALADRGETMVEIAAAAQAMRDRLIPIEAPAGAIDVCGTGGDGHHTLNVSTAVSIVVAACDVPVAKHGNRAASSKSGAADTLEALGLDMERADRQAQEQLADLGICFLFAGTRHPAMKRIMPIRKAIGRRTIFNLMGP 178          
BLAST of CN186080 vs. ExPASy Swiss-Prot
Match: TRPD_OCHA4 (Anthranilate phosphoribosyltransferase OS=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) GN=trpD PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.361e-23
Identity = 59/165 (35.76%), Postives = 93/165 (56.36%), Query Frame = 2
Query:  215 LTEAEAQASLDYLLN-EADEALISAFLVLLRAKGETFGEIVGLARAMIKYAAKVEGLGDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGP 706
            L+  +++A+ D +++ +A  + I   L+ LR +GET  EI G   +M      V    +A+DIVGTGGD + + N+S+ ++ + A  G  VAK             D L ALG+ I+ D   + R + EAG+GFM +  +H AM+ V P R +L  +T+FN+LGP
Sbjct:   17 LSLEDSRAAFDIMMSGQATPSQIGGLLMALRVRGETVPEIAGAVASMRSRMLGVSAPNNAIDIVGTGGDQSGSYNVSSCSAFVVAGAGVPVAKHGNRALSSRSGAADALAALGINIEADASIIGRSITEAGLGFMFAPMHHSAMRHVGPSRVELGTRTIFNLLGP 181          
BLAST of CN186080 vs. ExPASy Swiss-Prot
Match: TRPD_NITMS (Anthranilate phosphoribosyltransferase OS=Nitrosopumilus maritimus (strain SCM1) GN=trpD PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.361e-23
Identity = 66/179 (36.87%), Postives = 96/179 (53.63%), Query Frame = 2
Query:  179 NELIDCLISRVDLTEAEA-QASLDYLLNEADEALISAFLVLLRAKGETFGEIVGLARAMIKYAAKVE--GLGDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGP 706
            ++LI  L  + DLT  E  Q   D L  +  ++  + FL  L  KGET  E++G+   M +++ K+E    G  +D+ GTGGD   T NIST AS + AA G  VAK             D+ E  G  ++L+P  +   +++  I FM + K+HPAMK V   RK+L  +T FN+LGP
Sbjct:    3 SDLISKLQEKTDLTYDEMNQVMTDVLSGKTTDSENADFLSNLTDKGETDDELLGMLDKMQEFSLKIEPKNTGTIIDMCGTGGDKLQTFNISTTASFVVAAAGGVVAKHGNRSSSGISGSADIFEYFGYDLNLEPPKIAEILEKHNICFMFAQKFHPAMKHVSVARKQLGKRTAFNLLGP 181          
BLAST of CN186080 vs. ExPASy Swiss-Prot
Match: TRPD_DESDG (Anthranilate phosphoribosyltransferase OS=Desulfovibrio desulfuricans (strain G20) GN=trpD PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.361e-23
Identity = 65/177 (36.72%), Postives = 96/177 (54.24%), Query Frame = 2
Query:  182 ELIDCLISRVDLTEAEAQASLDYLLN-EADEALISAFLVLLRAKGETFGEIVGLARAMIKYAAKVEGLG-DAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGP 706
            E+++ L S   L    A  + D L++ E   A   +FL+ LR+ GET   +    RA + +A  ++GL  D +DIVGTGGDG N+ N ST A++  A  G KV K             DV+E LG+ ++  PE V   +      F+ +  YHPA + V PVR+ L ++T+FN+LGP
Sbjct:    5 EILETLASGGVLPPETAHMAFDRLMSGEMTPAQAGSFLMGLRSHGETPELVASAVRAALAHARLIQGLEYDRIDIVGTGGDGRNSFNCSTAAALTLAGMGYKVVKHGNRAVSSTSGSADVVEGLGLPLETAPEDVPVLLARHNFVFLFAPFYHPAFRHVMPVRRDLGIRTLFNVLGP 181          
BLAST of CN186080 vs. ExPASy Swiss-Prot
Match: TRPD_CLAMS (Anthranilate phosphoribosyltransferase OS=Clavibacter michiganensis subsp. sepedonicus (strain ATCC 33113 / JCM 9667) GN=trpD PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.361e-23
Identity = 68/184 (36.96%), Postives = 99/184 (53.80%), Query Frame = 2
Query:  161 PQTPCFNELIDCLISRVDLTEAEAQASLDYLLN-EADEALISAFLVLLRAKGETFGEIVGLARAMIKYAAKVEGLGDAVDIVGTGGDGANTV-NISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGP 706
            P  P +  LI  LI    L+ +E+  ++  ++  EA  A +   LV LRA GET  EIVG   A+++ A  ++    A+DIVGTGGD    V NIS+ ASI+AA+ G  V K             DVL ALG+ + + PE V   + E GI +  +  +HP  +     R++L + T+FN+LGP
Sbjct:    2 PSAPTWPALITTLIEGRHLSVSESTWAMRQVMRGEATPAQLGGLLVALRASGETVDEIVGFRDAVLEDALPLDADPRALDIVGTGGDPYGAVLNISSAASIVAASTGVPVIKHGNRGASSASGASDVLTALGIDLTIAPERVAAVLRETGITYAHAALFHPGFRHAAATRRELGISTLFNVLGP 185          
BLAST of CN186080 vs. ExPASy Swiss-Prot
Match: TRPD_LEPIN (Anthranilate phosphoribosyltransferase OS=Leptospira interrogans GN=trpD PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.733e-23
Identity = 63/173 (36.42%), Postives = 97/173 (56.07%), Query Frame = 2
Query:  197 LISRVDLTEAEAQASLDYLLN-EADEALISAFLVLLRAKGETFGEIVGLARAMIKYAAKVEGLG--DAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGP 706
            LI    LT  EA++ +++++  E  E L+S+FL  +R  GE+  E++G   A+ K A + + +   D +D  GTGGDG  T+NIST ++I+ A+ G KVAK             D+L  LG   +   E V   +   G  F+ +  +HP+MK   PVRK+L  +TVFN++GP
Sbjct:   10 LIEHKHLTTLEAESFMNHVMKGEVSEILLSSFLTAMRFNGESVEEVLGCTLALRKNALRPKTVFPFDLLDTCGTGGDGQGTINISTLSAIVLASLGIKVAKHGNRSVSSHTGSSDILTRLGYQTETTQEEVEAHLVNRGFTFLFAPMWHPSMKHAGPVRKELGFRTVFNMIGP 182          
BLAST of CN186080 vs. ExPASy Swiss-Prot
Match: TRPD_LEPIC (Anthranilate phosphoribosyltransferase OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni GN=trpD PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.733e-23
Identity = 63/173 (36.42%), Postives = 97/173 (56.07%), Query Frame = 2
Query:  197 LISRVDLTEAEAQASLDYLLN-EADEALISAFLVLLRAKGETFGEIVGLARAMIKYAAKVEGLG--DAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGP 706
            LI    LT  EA++ +++++  E  E L+S+FL  +R  GE+  E++G   A+ K A + + +   D +D  GTGGDG  T+NIST ++I+ A+ G KVAK             D+L  LG   +   E V   +   G  F+ +  +HP+MK   PVRK+L  +TVFN++GP
Sbjct:   10 LIEHKHLTALEAESFMNHVMKGEVSEILLSSFLTAMRFNGESVEEVLGCTLALRKNALRPKTVFPFDLLDTCGTGGDGQGTINISTLSAIVLASLGIKVAKHGNRSVSSHTGSSDILTRLGYQTETTQEEVEAHLVNRGFTFLFAPMWHPSMKHAGPVRKELGFRTVFNMIGP 182          
The following BLAST results are available for this feature:
BLAST of CN186080 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TRPD_BLOPB1.971e-2332.77Anthranilate phosphoribosyltransferase OS=Blochman... [more]
TRPD_LISMH2.574e-2340.97Anthranilate phosphoribosyltransferase OS=Listeria... [more]
TRPD_HELPH2.574e-2333.90Anthranilate phosphoribosyltransferase OS=Helicoba... [more]
TRPD_SPHAL3.361e-2338.36Anthranilate phosphoribosyltransferase OS=Sphingop... [more]
TRPD_OCHA43.361e-2335.76Anthranilate phosphoribosyltransferase OS=Ochrobac... [more]
TRPD_NITMS3.361e-2336.87Anthranilate phosphoribosyltransferase OS=Nitrosop... [more]
TRPD_DESDG3.361e-2336.72Anthranilate phosphoribosyltransferase OS=Desulfov... [more]
TRPD_CLAMS3.361e-2336.96Anthranilate phosphoribosyltransferase OS=Clavibac... [more]
TRPD_LEPIN5.733e-2336.42Anthranilate phosphoribosyltransferase OS=Leptospi... [more]
TRPD_LEPIC5.733e-2336.42Anthranilate phosphoribosyltransferase OS=Leptospi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002F09_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002F09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186080 ID=CN186080; Name=CN186080; organism=Citrus sinensis; type=EST; length=708bp
AGGGTTTCTTCCTCTCCATTTAATAATAATCACCCAAACCACCGGCCTTT
CTTACCGTCGCTTGGGAACTGTGGATTTACGACTGCGGGTAATAATCCGA
GATGCAGAGAATTAACTGCTATTCAAACCCCTCAGCCGGCTGTTTCTGAT
AGATACTCGTCCTCAAACGCCCTGCTTTAATGAGTTGATCGATTGCTTGA
TAAGTCGAGTGGATTTAACGGAGGCGGAGGCTCAAGCTTCGCTGGATTAC
TTGTTGAATGAAGCTGATGAGGCCTTGATTAGTGCTTTTCTTGTTTTGCT
CAGAGCCAAAGGAGAAACATTTGGAGAGATTGTGGGATTGGCCAGGGCGA
TGATAAAGTATGCTGCGAAGGTGGAAGGGCTGGGTGATGCAGTTGACATT
GTGGGTACAGGAGGTGATGGTGCAAACACAGTGAACATTTCAACTGGTGC
TTCAATTCTTGCCGCAGCTTGTGGTGCAAAAGTTGCCAAGCAAGGGAGTC
GGTCTAGTTCTTCTGCATGTGGAAGTGCTGATGTGTTAGAAGCTTTGGGT
GTCGTTATTGACTTGGACCCAGAGGGTGTAAGAAGGTGTGTGGATGAGGC
AGGAATTGGTTTCATGATGTCGACAAAGTATCACCCTGCAATGAAGTTTG
TCAGGCCAGTGAGGAAAAAGCTCAAAGTAAAAACTGTATTCAATATATTG
GGTCCTAT
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