CN186066

Overview
NameCN186066
Unique NameCN186066
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length800
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN186066 vs. ExPASy Swiss-Prot
Match: CUL4A_MOUSE (Cullin-4A OS=Mus musculus GN=Cul4a PE=2 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 1.318e-45
Identity = 99/215 (46.05%), Postives = 142/215 (66.05%), Query Frame = -2
Query:  149 LCEKFRSYYLGTHTGRRLSWQTNMGSADIKATFGKGQKHELNVSTYQMCVLMLFNNADRLSYREIEQATEIPASDLKRCLQSLACVRGKNVLRKEPMSKDIGEDDAFFVNDKFTSKFYKVKIGTVVAQKESEPEKQETRQRVEEDRKPQIEAAIVRIMKSRRVLDHNNIIAEVTKQLQSRFLANPTEIKKRIESLIERDFLERDNVDRKLYRYLA 793
            L E F+++YLG H+GR+L WQT +G A +KA F +G+K E  VS +Q  VL++FN  D  S+ EI+ AT I  S+L+R LQSLAC + + VL K P  K++ + D F  N  F  K +++KI   +  KE+  E+  T +RV +DR+ QI+AAIVRIMK R+ L HN +++E+  QL  +F   P ++KKRIESLI+RD++ERD      Y Y+A
Sbjct:  550 LQEVFKTFYLGKHSGRKLQWQTTLGHAVLKADFKEGKK-EFQVSLFQTLVLLMFNEGDGFSFEEIKMATGIEDSELRRTLQSLACGKAR-VLIKSPKGKEVEDGDKFIFNADFKHKLFRIKINQ-IQMKETVEEQVSTTERVFQDRQYQIDAAIVRIMKMRKTLGHNLLVSELYNQL--KFPVKPGDLKKRIESLIDRDYMERDKDSPNQYHYVA 759          
BLAST of CN186066 vs. ExPASy Swiss-Prot
Match: CUL1_ARATH (Cullin-1 OS=Arabidopsis thaliana GN=CUL1 PE=1 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 1.118e-36
Identity = 88/213 (41.31%), Postives = 129/213 (60.56%), Query Frame = -2
Query:  149 EKFRSYYLGTHTGRRLSWQTNMGSADIKATFGKGQKHELNVSTYQMCVLMLFNNADRLSYREIEQATEIPASDLKRCLQSLACVRGKNVLRKEPMSKDIGEDDAFFVNDKFTSKFYKVKIGTVVAQKESEPEKQETRQRVEEDRKPQIEAAIVRIMKSRRVLDHNNIIAEVTKQLQSRFLANPTEIKKRIESLIERDFLERDNVDRKLYRYLA 787
            E F+ +Y      R+L+W  ++G+  I   F + +  EL VSTYQ  VL+LFN  D+LSY EI     +   DL R L SL+C + K +L KEP +K + ++DAF  N KFT +  ++KI           E+++  + V++DR+  I+AAIVRIMKSR+VL H  +++E  +QL   F  +   IKKR+E LI RD+LERD  +  ++RYLA
Sbjct:  533 EVFKGFYETKTKHRKLTWIYSLGTCHINGKFDQ-KAIELIVSTYQAAVLLLFNTTDKLSYTEILAQLNLSHEDLVRLLHSLSCAKYK-ILLKEPNTKTVSQNDAFEFNSKFTDRMRRIKIPLPPVD-----ERKKVVEDVDKDRRYAIDAAIVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDKENPNMFRYLA 738          
BLAST of CN186066 vs. ExPASy Swiss-Prot
Match: CUL4_SCHPO (Cullin-4 OS=Schizosaccharomyces pombe GN=cul4 PE=1 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 8.014e-35
Identity = 76/213 (35.68%), Postives = 133/213 (62.44%), Query Frame = -2
Query:  152 FRSYYLGTHTGRRLSWQTNMGSADIKATFGKGQKHELNVSTYQMCVLMLFNNA---DRLSYREIEQATEIPASDLKRCLQSLACVRGKNVLRKEPMSKDIGEDDAFFVNDKFTSKFYKVKIGTVVAQKESEPEKQETRQRVEEDRKPQIEAAIVRIMKSRRVLDHNNIIAEVTKQLQSRFLANPTEIKKRIESLIERDFLERDNVDRKLYRYL 781
            F  +YL    G+++SW  ++G   +KA F  G K EL++S +Q CVL+ FNN    + +SY++++++TE+   DL R LQSL+C R + ++   P SK    D  F+VN+KFT K Y+VKI  +   KE   E  + +++V  DR+ +++A+IVR+MK +  + H++++  V   ++ R +   +++K  IE L+E+++LER+  D  +Y Y+
Sbjct:  526 FEKFYLSKQVGKKISWYASLGHCIVKARFPLGNK-ELSISLFQACVLLQFNNCLGGEGISYQDLKKSTELSDIDLTRTLQSLSCARIRPLVMV-PKSKKPSPDTMFYVNEKFTDKLYRVKINQIYL-KEERQENSDVQEQVVRDRQFELQASIVRVMKQKEKMKHDDLVQYVINNVKDRGIPLVSDVKTAIEKLLEKEYLERE--DNDIYTYV 733          
BLAST of CN186066 vs. ExPASy Swiss-Prot
Match: CUL2_PONAB (Cullin-2 OS=Pongo abelii GN=CUL2 PE=2 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 5.743e-33
Identity = 78/213 (36.62%), Postives = 134/213 (62.91%), Query Frame = -2
Query:  149 EKFRSYYLGTHTGRRLSWQTNMGSADIKATFGKGQKHELNVSTYQMCVLMLFNNADRLSYREIEQATEIPASDLKRCLQSLACVRGKNVLRKEPMSKDIGEDDAFFVNDKFTSKFYKVKIGTVVAQKESEPEKQETRQRVEEDRKPQIEAAIVRIMKSRRVLDHNNIIAEVTKQLQSRFLANPTEIKKRIESLIERDFLERDNVDRKLYRYLA 787
            + F  +Y    +GR+L+W   + + ++K  +  G+ +   V+TYQM VL+ FNN++ +SY+E++ +T++   +L + ++SL  V+   ++  +   +DI  + +F +N  F+SK  K KI T + QK++  E ++TR  V+EDRK  ++AAIVRIMK+R+VL HN +I EV  Q ++RF  + + IKK IE LI++ ++ER       Y Y+A
Sbjct:  538 QMFELFYSQHFSGRKLTWLHYLCTGEVKMNY-LGKPYVAMVTTYQMAVLLAFNNSETVSYKELQDSTQMNEKELTKTIKSLLDVK---MINHDSEKEDIDAESSFSLNMNFSSKRTKFKITTSM-QKDTPQEMEQTRSAVDEDRKMYLQAAIVRIMKARKVLRHNALIQEVISQSRARFNPSISMIKKCIEVLIDKQYIERSQASADEYSYVA 745          
BLAST of CN186066 vs. ExPASy Swiss-Prot
Match: CUL2_HUMAN (Cullin-2 OS=Homo sapiens GN=CUL2 PE=1 SV=2)

HSP 1 Score: 141.354 bits (355), Expect = 5.743e-33
Identity = 78/213 (36.62%), Postives = 134/213 (62.91%), Query Frame = -2
Query:  149 EKFRSYYLGTHTGRRLSWQTNMGSADIKATFGKGQKHELNVSTYQMCVLMLFNNADRLSYREIEQATEIPASDLKRCLQSLACVRGKNVLRKEPMSKDIGEDDAFFVNDKFTSKFYKVKIGTVVAQKESEPEKQETRQRVEEDRKPQIEAAIVRIMKSRRVLDHNNIIAEVTKQLQSRFLANPTEIKKRIESLIERDFLERDNVDRKLYRYLA 787
            + F  +Y    +GR+L+W   + + ++K  +  G+ +   V+TYQM VL+ FNN++ +SY+E++ +T++   +L + ++SL  V+   ++  +   +DI  + +F +N  F+SK  K KI T + QK++  E ++TR  V+EDRK  ++AAIVRIMK+R+VL HN +I EV  Q ++RF  + + IKK IE LI++ ++ER       Y Y+A
Sbjct:  538 QMFELFYSQHFSGRKLTWLHYLCTGEVKMNY-LGKPYVAMVTTYQMAVLLAFNNSETVSYKELQDSTQMNEKELTKTIKSLLDVK---MINHDSEKEDIDAESSFSLNMNFSSKRTKFKITTSM-QKDTPQEMEQTRSAVDEDRKMYLQAAIVRIMKARKVLRHNALIQEVISQSRARFNPSISMIKKCIEVLIDKQYIERSQASADEYSYVA 745          
BLAST of CN186066 vs. ExPASy Swiss-Prot
Match: CUL2_MOUSE (Cullin-2 OS=Mus musculus GN=Cul2 PE=1 SV=2)

HSP 1 Score: 140.969 bits (354), Expect = 7.501e-33
Identity = 78/213 (36.62%), Postives = 134/213 (62.91%), Query Frame = -2
Query:  149 EKFRSYYLGTHTGRRLSWQTNMGSADIKATFGKGQKHELNVSTYQMCVLMLFNNADRLSYREIEQATEIPASDLKRCLQSLACVRGKNVLRKEPMSKDIGEDDAFFVNDKFTSKFYKVKIGTVVAQKESEPEKQETRQRVEEDRKPQIEAAIVRIMKSRRVLDHNNIIAEVTKQLQSRFLANPTEIKKRIESLIERDFLERDNVDRKLYRYLA 787
            + F  +Y    +GR+L+W   + + ++K  +  G+ +   V+TYQM VL+ FNN++ +SY+E++ +T++   +L + ++SL  V+   ++  +   +DI  + +F +N  F+SK  K KI T + QK++  E ++TR  V+EDRK  ++AAIVRIMK+R+VL HN +I EV  Q ++RF  + + IKK IE LI++ ++ER       Y Y+A
Sbjct:  538 QMFELFYSQHFSGRKLTWLHYLCTGEVKMNY-LGKPYVAMVTTYQMAVLLAFNNSETVSYKELQDSTQMNEKELTKTIKSLLDVK---MINHDSEKEDIDAESSFSLNMSFSSKRTKFKITTSM-QKDTPQELEQTRSAVDEDRKMYLQAAIVRIMKARKVLRHNALIQEVISQSRARFNPSISMIKKCIEVLIDKQYIERSQASADEYSYVA 745          
BLAST of CN186066 vs. ExPASy Swiss-Prot
Match: CUL4_DICDI (Cullin-4 OS=Dictyostelium discoideum GN=culD PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 6.350e-32
Identity = 85/247 (34.41%), Postives = 134/247 (54.25%), Query Frame = -2
Query:  149 EKFRSYYLGTHTGRRLSWQTNMGSADIKATFGKGQKHELNVSTYQMCVLMLFNNA---DRLSYREIEQATEIPASDLKRCLQSLACVRGKNVLRKEPMS-------------------------------KDIGEDDAFFVNDKFTSKFYKVKIGTVVAQKESEPEKQETRQRVEEDRKPQIEAAIVRIMKSRRVLDHNNIIAEVTKQLQSRFLANPTEIKKRIESLIERDFLERDNVDRKLYRYLA 787
            E F  +YL  H G+ L WQ  +    +KA F +G+K EL+VS +Q  +L LFN+      LS+R+I+  T +   +LK+ L SL   +   +++K+  +                               K I E D F  N KF+SK +K+K+ ++  Q+  E E Q+T + +  DR+ Q++AAIVRIMK+R+ L HN +I+E+   L  +F   P ++KKRIE LIE+++L RD  +  +Y Y+A
Sbjct:  560 EVFNKFYLSKHNGKTLKWQNALSYCVLKANFIQGKK-ELSVSLFQTIILYLFNDVIDGGELSFRDIQANTGLAIPELKKNLLSLCSSKSDILIQKKSSTSSNTSSNTSSNTSSSASGSASGGASGGATKTKVIDETDTFLFNSKFSSKLFKIKVNSIQIQETVE-ENQKTNENIISDRQYQVDAAIVRIMKTRKTLAHNLLISELVSLL--KFQPKPVDLKKRIEILIEKEYLCRDPENAMIYNYMA 802          
BLAST of CN186066 vs. ExPASy Swiss-Prot
Match: CUL1_DICDI (Cullin-1 OS=Dictyostelium discoideum GN=culA PE=1 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 1.121e-28
Identity = 82/218 (37.61%), Postives = 128/218 (58.72%), Query Frame = -2
Query:  149 CEK-FRSYYLGTHTGRRLSWQTNMGSADIKATFGKGQK--HELNVSTYQMCVLMLFNNADRLSYREIEQATEIPASDLKRCLQSLACVRGKNVLRKEPMS-KDIGEDDAFFVNDKFTSKFYKVKIGTVVAQKESEPEKQETRQRVEEDRKPQIEAAIVRIMKSRRVLDHNNIIAEVTKQLQSRFLANPTEIKKRIESLIERDFLERDNVDRKLYRYLA 790
            CE+ F+ +Y   H+GR+L+W  ++   ++K  + +  K  + L  STYQ+ VL+ FN  + L+  EI+++T++  S LK  L SLA  + K +L   P+  ++I +   F +N +F +K  K+ I   V  +  E E     + VEEDRK QI+AAIVRIMK R+ L H+ ++ EV  QLQ+RF      IKK I+ LIE+++L R    +  Y Y+A
Sbjct:  556 CEQLFQKFYQNQHSGRKLNWLHHLSKGELKTKYLQTSKSGYTLQCSTYQIGVLLQFNQYETLTSEEIQESTQLIDSVLKGTLTSLA--KSKILLADPPLDDEEIAKTTKFSLNKQFKNKKTKIFINVPVLTQVKE-EIDSIHKTVEEDRKLQIQAAIVRIMKMRKQLAHSGLMTEVISQLQTRFNPKVNIIKKCIDILIEKEYLMRVEGKKDHYSYVA 770          
BLAST of CN186066 vs. ExPASy Swiss-Prot
Match: CUL5_DICDI (Cullin-5 OS=Dictyostelium discoideum GN=culE PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.618e-27
Identity = 72/217 (33.18%), Postives = 122/217 (56.22%), Query Frame = -2
Query:  149 FRSYYLGTHTGRRLSWQTNMGSADIKATFGKGQKHELNVSTYQMCVLMLFNNADRLSYREIEQATEIPASDLKRCLQSLACVRGKNVLRKEPMSKDIGEDDAFFVNDKFTSKFYKVKIGTVVA---QKESEPEKQETRQRVEEDRKPQIEAAIVRIMKSRRVLDHNNIIAEVTKQLQSRFLANPTEIKKRIESLIERDFLER---DNVDRKLYRYLA 781
            F S+Y  ++ GR L++  +   AD+ +   KG+ ++L  + YQM +L++FN AD+++   I     +  + ++  L  LA ++   +   EP  K+   D  F VN KF+SK  KV     V     K+SE ++  + Q +E++R  +++AAIVRIMKS++ + HN++  E T Q+   F    T IKK IE LI+++++ R   DN   + Y Y+A
Sbjct:  536 FESFYKKSYQGRVLTFLYDFSRADVDSRQAKGKIYKLTTTAYQMAILLMFNGADKITRFLINDTIGLDETSIR--LPLLALIKTGIIECSEPSFKNWNNDTEFTVNSKFSSKKMKVSCNIAVQIGETKQSEGQQTVSEQEIEKERFFKLQAAIVRIMKSKKTMTHNDLTVETTTQVSKWFTPKITAIKKAIEYLIDQEYIRRTTDDNPSARKYEYMA 750          
BLAST of CN186066 vs. ExPASy Swiss-Prot
Match: CUL1_SCHPO (Cullin-1 OS=Schizosaccharomyces pombe GN=cul1 PE=1 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.761e-27
Identity = 73/214 (34.11%), Postives = 123/214 (57.48%), Query Frame = -2
Query:  161 LCEKFRSYYLGTHTGRRLSWQTNMGSADIKATFGKGQK--HELNVSTYQMCVLMLFNNADRLSYREIEQATEIPASDLKRCLQSLACVRGKNVLRKEPMSKDIGEDDAFF-VNDKFTSKFYKVKIGTVVAQKESEPEKQETRQRVEEDRKPQIEAAIVRIMKSRRVLDHNNIIAEVTKQLQSRFLANPTEIKKRIESLIERDFLERDNVDRKLY 793
            L E F++YY   H GR+LSW  ++   +IKA         +   VSTYQM VL+L+N+ D  +Y E+ + T +    L   L     ++ K +L  +  +  +G+ ++ + +N+ F  K  +V++   + + E + E  ET + +EEDRK  +++AIVRIMK+RR L H  ++ E   Q++SRF    ++IK+ I+ LIE+++LER   D  +Y
Sbjct:  557 LYEGFQNYYYSCHNGRKLSWLFHLSKGEIKARINPQTNVTYVFQVSTYQMGVLLLYNHRDSYTYEELAKITGLSTDFLTGILNIF--LKAKVLLLGD--NDKLGDPNSTYKINENFRMKKIRVQLNLPI-RSEQKQESLETHKTIEEDRKLLLQSAIVRIMKARRTLKHVVLVKETIDQIKSRFTPKVSDIKQCIDMLIEKEYLERQGRDEYIY 765          
The following BLAST results are available for this feature:
BLAST of CN186066 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
CUL4A_MOUSE1.318e-4546.05Cullin-4A OS=Mus musculus GN=Cul4a PE=2 SV=1[more]
CUL1_ARATH1.118e-3641.31Cullin-1 OS=Arabidopsis thaliana GN=CUL1 PE=1 SV=1[more]
CUL4_SCHPO8.014e-3535.68Cullin-4 OS=Schizosaccharomyces pombe GN=cul4 PE=1... [more]
CUL2_PONAB5.743e-3336.62Cullin-2 OS=Pongo abelii GN=CUL2 PE=2 SV=1[more]
CUL2_HUMAN5.743e-3336.62Cullin-2 OS=Homo sapiens GN=CUL2 PE=1 SV=2[more]
CUL2_MOUSE7.501e-3336.62Cullin-2 OS=Mus musculus GN=Cul2 PE=1 SV=2[more]
CUL4_DICDI6.350e-3234.41Cullin-4 OS=Dictyostelium discoideum GN=culD PE=3 ... [more]
CUL1_DICDI1.121e-2837.61Cullin-1 OS=Dictyostelium discoideum GN=culA PE=1 ... [more]
CUL5_DICDI1.618e-2733.18Cullin-5 OS=Dictyostelium discoideum GN=culE PE=3 ... [more]
CUL1_SCHPO2.761e-2734.11Cullin-1 OS=Schizosaccharomyces pombe GN=cul1 PE=1... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002F02_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002F02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186066 ID=CN186066; Name=CN186066; organism=Citrus sinensis; type=EST; length=800bp
CTTTTTTTTGGAAAAACGGGTTATCTTGAAACAAACTGAGATTGCCCACT
TTTTAAAACAATTTTCGACTTACCAACTAACGTACAAATTGAATTGTTTG
CGCTAAAATTTCCTCAAGAAACAAGTAATCTTCTCATGCCAATCTTTAGG
CAAGATACCGATACAATTTTCTGTCTACATTATCCCTCTCCAAGAAATCC
CTTTCAATGAGGGACTCAATCCGTTTTTTAATCTCCGTGGGGTTTGCCAG
AAACCGTGACTGCAACTGCTTTGTGACCTCAGCAATTATGTTGTTATGAT
CGAGTACTCTCCTTGATTTCATGATTCTAACGATGGCAGCTTCAATCTGA
GGCTTCCTGTCCTCCTCCACTCTTTGCCGAGTTTCCTGTTTCTCTGGTTC
TGACTCCTTTTGTGCAACCACAGTTCCTATCTTTACCTTATAGAATTTGC
TCGTGAACTTGTCATTGACAAAGAATGCATCATCTTCACCAATGTCTTTA
CTCATAGGTTCTTTCCGAAGAACATTCTTCCCCCTCACACAAGCCAGAGA
TTGCAGGCACCTTTTCAAGTCTGAAGCAGGAATCTCTGTTGCCTGCTCTA
TTTCCCTGTAGCTAAGCCGATCAGCATTGTTAAACAGCATGAGAACACAC
ATTTGGTATGTGGAGACATTCAGCTCATGCTTCTGACCTTTACCAAAGGT
TGCTTTTATATCTGCTGAGCCCATGTTGGTTTGCCAGGACAATCTCCGAC
CAGTATGAGTTCCAAGGTAGTATGATCTAAATTTCTCACACAGAGCTGAC
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