CN186066

Overview
NameCN186066
Unique NameCN186066
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length800
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5017 contig Csv1_Contig5017:17..816. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN186066 vs. ExPASy Swiss-Prot
Match: CUL4_CAEEL (Cullin-4 OS=Caenorhabditis elegans GN=cul-4 PE=1 SV=3)

HSP 1 Score: 121.324 bits (303), Expect = 6.150e-27
Identity = 75/221 (33.94%), Postives = 125/221 (56.56%), Query Frame = -2
Query:  149 FRSYYLGTHTGRRLSWQTNMGSADIKATFGKGQKHELNVSTYQMCVLMLFNNADRLSYREIEQATEIPASDLKRCL----------QSLACVRGKNVLRKEPMSKDIGEDDAFFVNDKFTSKFYKVKIGTVVAQKESEPEKQETRQRVEEDRKPQIEAAIVRIMKSRRVLDHNNIIAEVTKQLQSRFLANPTEIKKRIESLIERDFLERDNVDRKLYRYLA 781
            ++ +Y   H  R + W   + SA I A+F  G K EL  + YQ  +L+LFN  +  +  EI + T+I   ++ + +          + L  V G    +KE   +++ +++ F VN KFT K  +V+I  V   K +  E +E ++ V  DR+ +I+AA+VRIMK+R+ L+H  ++ E+ +QL  RF  +  +IKKR+ESLIER+++ RD  +   Y Y+A
Sbjct:  624 YQDFYRVQHGNRNVKWHHGLASAVISASFRPGCKKELIATMYQTVILLLFNKCETWTVAEIVEHTKILEIEVVKNVLALLGGRDKPKVLQRVEGGGSEKKEGTVENL-KNEKFVVNSKFTEKRCRVRIAQVNI-KTAVEETKEVKEEVNSDRQYKIDAAVVRIMKARKQLNHQTLMTELLQQL--RFPVSTADIKKRLESLIEREYISRDPEEASSYNYVA 840          
BLAST of CN186066 vs. ExPASy Swiss-Prot
Match: CUL1_PONAB (Cullin-1 OS=Pongo abelii GN=CUL1 PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.515e-25
Identity = 70/217 (32.26%), Postives = 123/217 (56.68%), Query Frame = -2
Query:  149 EKFRSYYLGTHTGRRLSWQTNMGSADIKATFGKGQKHELNVSTYQMCVLMLFNNADRLSYREIEQATEIPASDLKRCLQSLACVRGKNVLRKEPMSK----DIGEDDAFFVNDKFTSKFYKVKIGTVVAQKESEPEKQETRQRVEEDRKPQIEAAIVRIMKSRRVLDHNNIIAEVTKQLQSRFLANPTEIKKRIESLIERDFLERDNVDRKLYRYLA 787
            ++F ++Y   H+GR+L+W   +   ++     K  ++ L  ST+QM +L+ +N  D  + +++  +T+I    L + LQ L  ++ K ++ ++  +     ++  D    +   + +K  +V I  V  + E + E++ T + +EEDRK  I+AAIVRIMK R+VL H  ++ EV  QL SRF      IKK I+ LIE+++LER + ++  Y YLA
Sbjct:  564 QRFTAFYASRHSGRKLTWLYQLSKGELVTNCFKN-RYTLQASTFQMAILLQYNTEDAYTVQQLTDSTQIKMDILAQVLQIL--LKSKLLVLEDENANVDEVELKPDTLIKLYLGYKNKKLRVNIN-VPMKTEQKQEQETTHKNIEEDRKLLIQAAIVRIMKMRKVLKHQQLLGEVLTQLSSRFKPRVPVIKKCIDILIEKEYLERVDGEKDTYSYLA 776          
BLAST of CN186066 vs. ExPASy Swiss-Prot
Match: CUL1_MOUSE (Cullin-1 OS=Mus musculus GN=Cul1 PE=1 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.515e-25
Identity = 70/217 (32.26%), Postives = 123/217 (56.68%), Query Frame = -2
Query:  149 EKFRSYYLGTHTGRRLSWQTNMGSADIKATFGKGQKHELNVSTYQMCVLMLFNNADRLSYREIEQATEIPASDLKRCLQSLACVRGKNVLRKEPMSK----DIGEDDAFFVNDKFTSKFYKVKIGTVVAQKESEPEKQETRQRVEEDRKPQIEAAIVRIMKSRRVLDHNNIIAEVTKQLQSRFLANPTEIKKRIESLIERDFLERDNVDRKLYRYLA 787
            ++F ++Y   H+GR+L+W   +   ++     K  ++ L  ST+QM +L+ +N  D  + +++  +T+I    L + LQ L  ++ K ++ ++  +     ++  D    +   + +K  +V I  V  + E + E++ T + +EEDRK  I+AAIVRIMK R+VL H  ++ EV  QL SRF      IKK I+ LIE+++LER + ++  Y YLA
Sbjct:  564 QRFTAFYASRHSGRKLTWLYQLSKGELVTNCFKN-RYTLQASTFQMAILLQYNTEDAYTVQQLTDSTQIKMDILAQVLQIL--LKSKLLVLEDENANVDEVELKPDTLIKLYLGYKNKKLRVNIN-VPMKTEQKQEQETTHKNIEEDRKLLIQAAIVRIMKMRKVLKHQQLLGEVLTQLSSRFKPRVPVIKKCIDILIEKEYLERVDGEKDTYSYLA 776          
BLAST of CN186066 vs. ExPASy Swiss-Prot
Match: CUL1_HUMAN (Cullin-1 OS=Homo sapiens GN=CUL1 PE=1 SV=2)

HSP 1 Score: 116.701 bits (291), Expect = 1.515e-25
Identity = 70/217 (32.26%), Postives = 123/217 (56.68%), Query Frame = -2
Query:  149 EKFRSYYLGTHTGRRLSWQTNMGSADIKATFGKGQKHELNVSTYQMCVLMLFNNADRLSYREIEQATEIPASDLKRCLQSLACVRGKNVLRKEPMSK----DIGEDDAFFVNDKFTSKFYKVKIGTVVAQKESEPEKQETRQRVEEDRKPQIEAAIVRIMKSRRVLDHNNIIAEVTKQLQSRFLANPTEIKKRIESLIERDFLERDNVDRKLYRYLA 787
            ++F ++Y   H+GR+L+W   +   ++     K  ++ L  ST+QM +L+ +N  D  + +++  +T+I    L + LQ L  ++ K ++ ++  +     ++  D    +   + +K  +V I  V  + E + E++ T + +EEDRK  I+AAIVRIMK R+VL H  ++ EV  QL SRF      IKK I+ LIE+++LER + ++  Y YLA
Sbjct:  564 QRFTAFYASRHSGRKLTWLYQLSKGELVTNCFKN-RYTLQASTFQMAILLQYNTEDAYTVQQLTDSTQIKMDILAQVLQIL--LKSKLLVLEDENANVDEVELKPDTLIKLYLGYKNKKLRVNIN-VPMKTEQKQEQETTHKNIEEDRKLLIQAAIVRIMKMRKVLKHQQLLGEVLTQLSSRFKPRVPVIKKCIDILIEKEYLERVDGEKDTYSYLA 776          
BLAST of CN186066 vs. ExPASy Swiss-Prot
Match: CUL6_CAEEL (Cullin-6 OS=Caenorhabditis elegans GN=cul-6 PE=1 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 4.408e-25
Identity = 71/218 (32.57%), Postives = 117/218 (53.67%), Query Frame = -2
Query:  149 SALCEKFRSYYLGTHTGRRLSWQTNMGSADIKATFGKGQKHELNVSTYQMCVLMLFNNADRLSYREIEQATEIPASDLKRCLQSLACVRGKNVLRKEPMSKDIGEDDAFF-VNDKFTSKFYKVKIGTVVAQKESEPEKQETRQRVEEDRKPQIEAAIVRIMKSRRVLDHNNIIAEVTKQLQSRFLANPTEIKKRIESLIERDFLERDNVDRKLYRYLA 799
            S + ++F ++Y  +H GRRL+W  +    ++ +   + +K+   V+  Q+C L LFN  D  +  +I +A E+ A      + SL  V    ++  +   KD    DA   +N K+ +K  +V + T + +  ++ E    +  VE DRK +I+A IVRIMK+R+ L H  +I E+  QL+SRF  N   IK  IE LIE+ ++ R   +  +Y YLA
Sbjct:  513 STILKEFDTFYNASHNGRRLNWAYSQCRGEVNSKAFE-KKYVFIVTASQLCTLYLFNEQDSFTIEQISKAIEMTAKSTSAIVGSLNPVIDPVLVVDKGNEKDGYPPDAVVSLNTKYANKKVRVDLTTAIKKATADRETDAVQNTVESDRKYEIKACIVRIMKTRKSLTHTLLINEIISQLKSRFTPNVQMIKICIEILIEQLYIRRSENEHNVYEYLA 729          
BLAST of CN186066 vs. ExPASy Swiss-Prot
Match: CUL2_DICDI (Cullin-2 OS=Dictyostelium discoideum GN=culB PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 4.408e-25
Identity = 72/244 (29.51%), Postives = 129/244 (52.87%), Query Frame = -2
Query:  149 FRSYYLGTHTGRRLSWQTNMGSADIKATFGKGQKHELNVSTYQMCVLMLFNNADRLSYREIEQATEIPASDLKRCLQSLACVRGKNVLRKEPMSKDIGEDD---------------------------------AFFVNDKFTSKFYKVKIGTVVAQKESEPEKQETRQRVEEDRKPQIEAAIVRIMKSRRVLDHNNIIAEVTKQLQSRFLANPTEIKKRIESLIERDFLERDNVDRKLYRYLA 781
            F+ YY   H GR+L+W  ++  A+ K+ F K + ++  V+ +Q+ +L++FN  + +S  EI + T +  ++L R LQSL  +  K ++ K+     I  ++                                  + VN  +++K  KVK+ + + QKE+  + +ET + ++EDRK  ++A+IVRIMK+R+ ++H ++I EV +  + RF  N   IKK IE LIE++++ R   +   Y Y A
Sbjct:  532 FQQYYSTQHQGRKLNWLHHLCKAEAKSFFAK-KSYDFQVTNFQLGILLIFNTQESVSLEEITKFTNLNENELSRTLQSL--IEAKILISKKKDQNSINNNNNNNNNNNNNGEGNNSLVDSANNMQPSSSSSSTQEYTVNSAYSNKRSKVKVSSSL-QKETPLQNEETYKGIDEDRKLYLQASIVRIMKARKTMNHVSLIQEVIEHSRLRFQPNIPMIKKCIEQLIEKEYITRAEGESDRYLYAA 771          
BLAST of CN186066 vs. ExPASy Swiss-Prot
Match: CUL1_DROME (Cullin homolog 1 OS=Drosophila melanogaster GN=lin19 PE=1 SV=2)

HSP 1 Score: 107.457 bits (267), Expect = 9.190e-23
Identity = 68/214 (31.78%), Postives = 112/214 (52.34%), Query Frame = -2
Query:  149 KFRSYYLGTHTGRRLSWQTNM--GSADIKATFGKGQKHELNVSTYQMCVLMLFNNADRLSYREIEQATEIPASDLKRCLQSLACVRGKNVLRKEPMSKDIGEDDAFFVNDKFTSKFYKVKIGTVVAQKESEPEKQETRQRVEEDRKPQIEAAIVRIMKSRRVLDHNNIIAEVTKQLQSRFLANPTEIKKRIESLIERDFLERDNVDRKLYRYLA 784
            +F  +Y   H+GR+L+W   M  G   +         + L  ST+QM VL+ FN+    + ++++  T+    +L + LQ L   +   VL        +  +    +   + +K  ++ I   + + E + E++   + +EEDRK  I+AAIVRIMK R+ L+H N+I+EV  QL +RF      IKK I+ LIE+++LER    +  Y YLA
Sbjct:  565 QFNEFYAARHSGRKLNWLYQMCKGELIMNVNRNNSSTYTLQASTFQMSVLLQFNDQLSFTVQQLQDNTQTQQENLIQVLQILLKAK---VLTSSDNENSLTPESTVELFLDYKNKKRRININQPL-KTELKVEQETVHKHIEEDRKLLIQAAIVRIMKMRKRLNHTNLISEVLNQLSTRFKPKVPVIKKCIDILIEKEYLERMEGHKDTYSYLA 774          
BLAST of CN186066 vs. ExPASy Swiss-Prot
Match: CUL2_CAEEL (Cullin-2 OS=Caenorhabditis elegans GN=cul-2 PE=1 SV=2)

HSP 1 Score: 105.916 bits (263), Expect = 2.674e-22
Identity = 65/215 (30.23%), Postives = 116/215 (53.95%), Query Frame = -2
Query:  149 EKFRSYYLGTHTGRRLSWQTNMGSADIKATFGKGQKHELNVSTYQMCVLMLFNNADRLSYREIEQATEIPASDLKRCLQSLACVRGKNVLRKEPMSKDIGEDDAFFVNDKFTSKFYKVKIGTVVAQKESEPEKQETRQ--RVEEDRKPQIEAAIVRIMKSRRVLDHNNIIAEVTKQLQSRFLANPTEIKKRIESLIERDFLERDNVDRKLYRYLA 787
            ++F  +Y G H GR+L+W  NM   D++ T+   +++   +  YQM  L+ F   D +  ++I +   +    L + ++++  V    +L  +   +++  D    +N   TSK  K ++      K  E E++      +V +DRK  +E AIVRIMK+R+VL HN ++ E+  Q + RF  +   IKK IE LIE+ +++R + + + Y+YLA
Sbjct:  569 QEFEKFYTGKHNGRKLTWLFNMSQGDVRLTY-LDKQYVAQMYVYQMAALLCFERRDAILVKDIGEEIGVSGDYLLKTIRTILDV---TLLTCD--DQNLTADSLVRLNMSMTSKRMKFRLQAPQVNKAVEKEQEAVANTFQVSQDRKYYMECAIVRIMKTRKVLKHNALVTEIMDQTKGRFSPDVPFIKKSIEDLIEKMYIQRTDQNDE-YQYLA 776          
BLAST of CN186066 vs. ExPASy Swiss-Prot
Match: CUL1_CAEEL (Cullin-1 OS=Caenorhabditis elegans GN=cul-1 PE=1 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 5.957e-22
Identity = 68/223 (30.49%), Postives = 112/223 (50.22%), Query Frame = -2
Query:  149 SALCEKFRSYYLGTHTGRRLSWQTNMGSADIKATFGKGQKHELNVSTYQMCVLMLFNNADRLSYREIEQATEIPASDLKRCLQSLA---CVRGKNVLRKE---PMSKDIGEDDAFFVNDKFTSKFYKVKIGTVVAQKESEPEKQETRQRVEEDRKPQIEAAIVRIMKSRRVLDHNNIIAEVTKQLQSRFLANPTEIKKRIESLIERDFLERDNVDRKLYRYLA 799
            S   E F  +Y     GRRL+W  +    +I +T    +K+    +T QMC ++LFN  D  +  +I  AT++        + SL     ++    L+KE   PM+  +       +N  + +K  +V +     ++++  + +  ++ VEEDRK  I A IVRIMK+R+ + H  ++ EV  QL  RF      IK+ I SLIE++++ R    + LY YLA
Sbjct:  565 SKTIEIFGQFYNEKFNGRRLTWVYSQSRGEITST-AFPKKYVFTATTAQMCTMLLFNEQDSYTVEQIAAATKMDEKSAPAIVGSLIKNLVLKADTELQKEDEVPMTATVS------LNKAYMNKKVRVDLSKFTMKQDAVRDTENVQKNVEEDRKSVISACIVRIMKTRKRVQHQQLMTEVITQLSGRFKPKVEMIKRCIGSLIEKEYMLRTEGQKDLYEYLA 780          
BLAST of CN186066 vs. ExPASy Swiss-Prot
Match: CUL3_YEAST (Cullin-3 OS=Saccharomyces cerevisiae GN=CUL3 PE=1 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 5.576e-20
Identity = 62/221 (28.05%), Postives = 109/221 (49.32%), Query Frame = -2
Query:  149 SALCEKFRSYYLGTHTGRRLSWQTNMGSADIKATFGKGQKHELNVSTYQMCVLMLFNNADRLSYREIEQATEIPASDLKRCLQSLACVRGKNVLRKEPMSKDIGEDDAFFVNDKFTSKFYKVKIGTVV----AQKESEPEKQETRQRVEEDRKPQIEAAIVRIMKSRRVLDHNNIIAEVTKQLQSRFLANPTEIKKRIESLIERDFLERDNVDRKLYRYLA 799
            S +   F  YY   +  R L W  ++   +I   F  G  +E++ S Y   + +LF + + L+  EI + T IP  D+K  + S++ +    +L+K   S ++     F VN  F+S   KVK+  +     +QK        +    + +   ++ A IVRIMK+   L H  ++   TK+ QSR    P+ +K+ I+ LIE+++++R+  D   Y YL+
Sbjct:  529 SQILAGFEGYYSLKYKERVLKWAHHLSVIEIGCQFNSGY-YEISFSVYAGVIFLLFEDYEELTLGEIYELTHIPIDDVKSLVMSMSTIPRCKILKKSSSSGNM----KFSVNYFFSSPNRKVKVPVIACPLPSQKSDNLATASSVDTYDNEIVMELSAIIVRIMKTEGKLSHQQLLERTTKRTQSRLSLTPSILKRSIQLLIEKEYIQRNADDPSYYHYLS 744          
The following BLAST results are available for this feature:
BLAST of CN186066 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
CUL4_CAEEL6.150e-2733.94Cullin-4 OS=Caenorhabditis elegans GN=cul-4 PE=1 S... [more]
CUL1_PONAB1.515e-2532.26Cullin-1 OS=Pongo abelii GN=CUL1 PE=2 SV=1[more]
CUL1_MOUSE1.515e-2532.26Cullin-1 OS=Mus musculus GN=Cul1 PE=1 SV=1[more]
CUL1_HUMAN1.515e-2532.26Cullin-1 OS=Homo sapiens GN=CUL1 PE=1 SV=2[more]
CUL6_CAEEL4.408e-2532.57Cullin-6 OS=Caenorhabditis elegans GN=cul-6 PE=1 S... [more]
CUL2_DICDI4.408e-2529.51Cullin-2 OS=Dictyostelium discoideum GN=culB PE=2 ... [more]
CUL1_DROME9.190e-2331.78Cullin homolog 1 OS=Drosophila melanogaster GN=lin... [more]
CUL2_CAEEL2.674e-2230.23Cullin-2 OS=Caenorhabditis elegans GN=cul-2 PE=1 S... [more]
CUL1_CAEEL5.957e-2230.49Cullin-1 OS=Caenorhabditis elegans GN=cul-1 PE=1 S... [more]
CUL3_YEAST5.576e-2028.05Cullin-3 OS=Saccharomyces cerevisiae GN=CUL3 PE=1 ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002F02_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002F02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186066 ID=CN186066; Name=CN186066; organism=Citrus sinensis; type=EST; length=800bp
CTTTTTTTTGGAAAAACGGGTTATCTTGAAACAAACTGAGATTGCCCACT
TTTTAAAACAATTTTCGACTTACCAACTAACGTACAAATTGAATTGTTTG
CGCTAAAATTTCCTCAAGAAACAAGTAATCTTCTCATGCCAATCTTTAGG
CAAGATACCGATACAATTTTCTGTCTACATTATCCCTCTCCAAGAAATCC
CTTTCAATGAGGGACTCAATCCGTTTTTTAATCTCCGTGGGGTTTGCCAG
AAACCGTGACTGCAACTGCTTTGTGACCTCAGCAATTATGTTGTTATGAT
CGAGTACTCTCCTTGATTTCATGATTCTAACGATGGCAGCTTCAATCTGA
GGCTTCCTGTCCTCCTCCACTCTTTGCCGAGTTTCCTGTTTCTCTGGTTC
TGACTCCTTTTGTGCAACCACAGTTCCTATCTTTACCTTATAGAATTTGC
TCGTGAACTTGTCATTGACAAAGAATGCATCATCTTCACCAATGTCTTTA
CTCATAGGTTCTTTCCGAAGAACATTCTTCCCCCTCACACAAGCCAGAGA
TTGCAGGCACCTTTTCAAGTCTGAAGCAGGAATCTCTGTTGCCTGCTCTA
TTTCCCTGTAGCTAAGCCGATCAGCATTGTTAAACAGCATGAGAACACAC
ATTTGGTATGTGGAGACATTCAGCTCATGCTTCTGACCTTTACCAAAGGT
TGCTTTTATATCTGCTGAGCCCATGTTGGTTTGCCAGGACAATCTCCGAC
CAGTATGAGTTCCAAGGTAGTATGATCTAAATTTCTCACACAGAGCTGAC
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