DC900149

Overview
NameDC900149
Unique NameDC900149
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length793
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC900149 vs. ExPASy Swiss-Prot
Match: GPMI_PROM1 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Prochlorococcus marinus (strain NATL1A) GN=gpmI PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.547e-22
Identity = 72/203 (35.47%), Postives = 107/203 (52.71%), Query Frame = 2
Query:    2 NGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVP-IAIGG-----PGLPDDVKFRTDLPNGGLANVAATFINLHGYEAP 592
            +G+  +  +ET K+ HVT+F NG         +   V  PS    T+++QP+M A E+ +   KAI S  +  V +N  N DMVGH+G + A + A +  D  V  ++++I K+GG  L+TADHGN+E M+     G+P          T+HT  PVP I I G      G  +D+K R     GGLA++A T ++L     P
Sbjct:  329 HGLNQYRTAETEKYPHVTYFLNGGIEKPLKGEVRHLV--PSPRVATYDLQPEMSADELTDSCIKAIDSGIYSLVVINFANPDMVGHSGIMTAAIKANEKVDSCVGKLLNSIGKLGGSLLITADHGNSEMMI--GPDGQP---------WTAHTTNPVPVILIEGEKRKLSGYGNDIKLRQS--GGGLADLAPTLLHLLNLPKP 516          
BLAST of DC900149 vs. ExPASy Swiss-Prot
Match: GPMI_LISW6 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Listeria welshimeri serovar 6b (strain ATCC 35897 / DSM 20650 / SLCC5334) GN=gpmI PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.547e-22
Identity = 69/198 (34.85%), Postives = 106/198 (53.54%), Query Frame = 2
Query:    5 GVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDDVKFRTDLPNGGLANVAATFINLHGYEAPSD 598
            G+     +ET K+ HVTFF NG R+  F    E  + I S    T+++QP+M A E+ +   + I + +   + +N  N DMVGH+G +E T+ A +A DE +  ++D I + GG  ++ ADHGN+E M      G+P          T+HT  PVP+ +   G    VK R     G LA+VA T ++L G + P++
Sbjct:  324 GLSQLRIAETEKYPHVTFFMNGGRNEEFPG--ENRILINSPKVETYDLQPEMSAYEVTDALVEDIKNDKHDAIILNFANPDMVGHSGMLEPTIKAIEAVDENLGRVVDLILEKGGSAIIFADHGNSETM--STPEGKP---------HTAHTTVPVPVIVTKKG----VKLR---EGGRLADVAPTMLDLLGVKKPAE 501          
BLAST of DC900149 vs. ExPASy Swiss-Prot
Match: GPMI_BACC1 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Bacillus cereus (strain ATCC 10987) GN=gpmI PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.547e-22
Identity = 66/198 (33.33%), Postives = 105/198 (53.03%), Query Frame = 2
Query:    5 GVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDDVKFRTDLPNGGLANVAATFINLHGYEAPSD 598
            G++    +ET K+ HVTFF++G R   F    EE + I S    T++++P+M   E+ +     I + +   + +N  N DMVGH+G +E T+ A +A DE +  +++AI    G+ L+TADHGNA+         E L  DG  + +T+HT  PVP  +      +DV+ R     G L ++A   + L G E P +
Sbjct:  324 GLKQLRIAETEKYPHVTFFFSGGREAEFPG--EERILINSPKVATYDLKPEMSIYEVTDALVNEIENDKHDVIILNFANCDMVGHSGMMEPTIKAVEATDECLGKVVEAILAKDGVALITADHGNAD---------EELTSDG--EPMTAHTTNPVPFIV----TKNDVELR---EGGILGDIAPXMLTLLGVEQPKE 501          
BLAST of DC900149 vs. ExPASy Swiss-Prot
Match: GPMI_WOLTR (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Wolbachia sp. subsp. Brugia malayi (strain TRS) GN=gpmI PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.020e-22
Identity = 68/200 (34.00%), Postives = 108/200 (54.00%), Query Frame = 2
Query:    2 NGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVG-GIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDDVKFRTDLPNGGLANVAATFINLHGYEAPSD 598
            N +R    +ET K+ HVTFF+N  +   F +  EE + IPS    T+++QP+M A E+ E+    I S+ F  +  N  N DMVGHTG++EA   A  A D+ +  +++ ++++   + +VTADHGN E M            + N    T+HTL  VP  I  P   +++K    L +G L+++A T + L G + P +
Sbjct:  311 NKLRQLRIAETEKYAHVTFFFNCGKEEPFSN--EERILIPSPKVETYDLQPEMSAFELTEKLVGKIRSQEFTLIVANYANPDMVGHTGNMEAAKKAVLAVDDCLAKVLNTVKEINDAVLIVTADHGNVECM----------FDEKNNTPHTAHTLNKVPFII-YPNSCNNLK----LKDGRLSDIAPTILQLLGIKKPDE 493          
BLAST of DC900149 vs. ExPASy Swiss-Prot
Match: GPMI_SULDN (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Sulfurimonas denitrificans (strain ATCC 33889 / DSM 1251) GN=gpmI PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.020e-22
Identity = 66/204 (32.35%), Postives = 107/204 (52.45%), Query Frame = 2
Query:    5 GVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDDVKFRTDLPNGGLANVAATFINLHGYEAPSDYEPSLI 616
            G+R    +ET K+ HVTFF+NG     +++  E  V IPS +  T++ +P+M A E+ E   K  +   +  + VN  N DMVGHTG++EA  +A    D  +  I+   +++    L+T+DHGN E+M           +D +  +LT+HT   V   +   G+       + + +GGL N+A T + L G E P + + SL+
Sbjct:  309 GLRQLHTAETEKYAHVTFFFNGGIDEPYEN--ETRVLIPSPNVRTYDEKPQMSAKEVGEVVLKG-MDEAYDFIVVNFANGDMVGHTGNLEAAKIAVNTVDSELGKILQKAKEMDYSVLITSDHGNCEEM-----------RDDDGNILTNHTAGKVWCFVEAEGV-------SRVEDGGLNNIAPTILKLMGLEIPKEMDHSLV 491          
BLAST of DC900149 vs. ExPASy Swiss-Prot
Match: GPMI_MYXXD (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Myxococcus xanthus (strain DK 1622) GN=gpmI PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.020e-22
Identity = 70/193 (36.27%), Postives = 101/193 (52.33%), Query Frame = 2
Query:    5 GVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDDVKFR-TDLPNGGLANVAATFINLHG 580
            G+R F  +ET K+ HVTFF+NG R   +       V  P D   T++++P+M A E+     K + S ++    VN  N DMVGH+G ++A + A KA DE +  +  A E+ G +  ++ADHGN E MV   ++GEP          T+HTL PVP  +  P       FR   L  G LA++A T   + G
Sbjct:  324 GLRQFRTAETEKYAHVTFFFNGGREVVYAGEDRHLVPSPRDVK-TYDLKPEMSAYEVTAELVKRLDSGKYDFALVNFANPDMVGHSGRLDAAMKAVKAVDECLGALGKACERNGWVLAISADHGNCEQMVDL-ETGEP---------HTAHTLNPVPFHLIHP------DFRGQKLRPGILADIAPTLCKVMG 499          
BLAST of DC900149 vs. ExPASy Swiss-Prot
Match: GPMI_RHOS4 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=gpmI PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.639e-22
Identity = 69/200 (34.50%), Postives = 100/200 (50.00%), Query Frame = 2
Query:    2 NGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVP-IAIGGPGLPDDVKFRTDLPNGGLANVAATFINLHGYEAPSD 598
            +G+R F  +ET K+ HVTFF NG R        E+     S    T+++QP+M A ++++   +AI    +  + VN  N DMVGHTGD++A + A +  D  +   ++A+ K GG  +VTADHGN E MV     G            T+HT  PVP I + GP           L  G LA++A T + L     P +
Sbjct:  318 HGLRQFRIAETEKYPHVTFFLNGGREA--PETGEDRYMANSPKVATYDLQPEMSAPDVSDHLVEAI-GAGYDLIVVNYANPDMVGHTGDLKAAMAAVEEVDRGLGRAVEAVTKAGGAMIVTADHGNCETMVDPETGGPH----------TAHTTNPVPVILVNGPA-------GARLHAGRLADLAPTLLQLMQLPQPEE 497          
BLAST of DC900149 vs. ExPASy Swiss-Prot
Match: GPMI_BACHD (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Bacillus halodurans GN=gpmI PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.639e-22
Identity = 66/191 (34.55%), Postives = 107/191 (56.02%), Query Frame = 2
Query:   26 SETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDDVKFRTDLPNGGLANVAATFINLHGYEAPSD 598
            +ET K+ HVTFF++G R   F    EE + I S    T++++P+M A E+ +     I + +   + +N  N DMVGH+G +E T+ A +A DE +  ++DAI   GG  ++TADHGNA+++V     G+P         +T+HT   VP+ +   GL      R D   G LA+++ T ++L G + P++
Sbjct:  332 AETEKYPHVTFFFSGGREEPFPG--EERILIDSPKVATYDLKPEMSAYEVTDALLNEIEADKHDVIILNFANPDMVGHSGMLEPTIKAVEAVDECLGKVVDAILAKGGAAVITADHGNADEVV--TLEGKP---------MTAHTTNKVPVIVTEEGL----NLRED---GILADLSPTVLDLLGGKQPAE 502          
BLAST of DC900149 vs. ExPASy Swiss-Prot
Match: GPMI_BACCN (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Bacillus cereus subsp. cytotoxis (strain NVH 391-98) GN=gpmI PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.639e-22
Identity = 66/198 (33.33%), Postives = 104/198 (52.53%), Query Frame = 2
Query:    5 GVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDDVKFRTDLPNGGLANVAATFINLHGYEAPSD 598
            G++    +ET K+ HVTFF++G R   F    EE + I S    T++++P+M   E+ +     I + +   + +N  N DMVGH+G +E T+ A +A DE +  +++AI    G+ ++TADHGNA+         E L  DG    +T+HT  PVP  +       DV+ R     G L ++A T + L G E P +
Sbjct:  324 GLKQLRIAETEKYPHVTFFFSGGREAEFPG--EERILINSPKVATYDLKPEMSIYEVTDALVNEIENDKHDVIILNFANCDMVGHSGMMEPTIKAVEATDECLGKVVEAILAKDGVAIITADHGNAD---------EELTPDG--APMTAHTTNPVPFIV----TKKDVELR---EGGILGDIAPTMLTLLGVEQPKE 501          
BLAST of DC900149 vs. ExPASy Swiss-Prot
Match: GPMI_ACHLI (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Acholeplasma laidlawii (strain PG-8A) GN=gpmI PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.639e-22
Identity = 66/198 (33.33%), Postives = 106/198 (53.54%), Query Frame = 2
Query:    2 NGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIID-AIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDDVKFRTDLPNGGLANVAATFINLHGYEAP 592
            NG +    +ET K+ HVTFF++G +     ++     E P     T++++P+M A E+ ++   A+ +  +  + +N  N DMVGHTG+IEAT  A +   E V  + D  I ++GG+ ++ ADHGNAE M  R++ G+P          T+HT   VP+ +   G+         L +G L +VA T ++L G E P
Sbjct:  323 NGFKQIRAAETEKYPHVTFFFDGGKEVPLANSTRILAESPKVP--TYDLKPEMSAYELTDKVIAALKTGEYQTMILNFANPDMVGHTGNIEATKKAVEVTVECVGKVTDFIINELGGVAIILADHGNAEQM--RDQEGKP---------HTAHTTNLVPVVVTKKGI--------KLNSGALCDVAPTLLDLLGIEKP 499          
The following BLAST results are available for this feature:
BLAST of DC900149 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 274
Match NameE-valueIdentityDescription
GPMI_PROM11.547e-2235.472,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_LISW61.547e-2234.852,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_BACC11.547e-2233.332,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_WOLTR2.020e-2234.002,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_SULDN2.020e-2232.352,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_MYXXD2.020e-2236.272,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_RHOS42.639e-2234.502,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_BACHD2.639e-2234.552,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_BACCN2.639e-2233.332,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_ACHLI2.639e-2233.332,3-bisphosphoglycerate-independent phosphoglycera... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionDC900149 VSS Citrus sinensis cDNA clone VS27V69 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900149 ID=DC900149; Name=DC900149; organism=Citrus sinensis; type=EST; length=793bp
TAATGGTGTCCGGACTTTTGCTTGCAGTGAGACTGTCAAGTTTGGACATG
TCACTTTCTTCTGGAATGGAAACCGCTCTGGGTATTTCGACTCGAATTTG
GAGGAATATGTGGAAATTCCTAGTGATTCTGGAATTACTTTCAATGTACA
GCCCAAGATGAAGGCTTTGGAGATTGCTGAAAGGGCAAAGAAGGCCATCC
TTAGTCGCAGGTTCCACCAGGTGCGTGTTAACCTACCAAATAGTGACATG
GTGGGGCACACGGGAGATATTGAGGCAACAGTGGTGGCATGCAAGGCTGC
TGATGAAGCTGTCAAGATAATCATTGATGCAATAGAGAAAGTTGGTGGAA
TATATCTTGTTACTGCAGATCATGGCAATGCTGAGGACATGGTCAAGAGG
AACAAATCTGGGGAGCCTCTTCTTAAGGATGGCAATATTCAAGTGCTCAC
GTCTCACACTCTTAAACCCGTTCCCATTGCAATCGGAGGTCCTGGACTGC
CAGATGATGTCAAGTTCCGCACAGATCTCCCTAATGGTGGGCTGGCCAAT
GTAGCAGCAACTTTTATCAATCTCCATGGATATGAGGCGCCTAGTGACTA
CGAGCCAAGTCTTATTGAAGTAACTGACGACTGAGAAGTAACTGACGACT
GGGCGAACAATGGATCGTCGCCTAGATTTTATAACTCCGGAGGAATTCCG
TTAAAACGTAAAACAATAAATTGAATTTTGGGGTCTTGAATTCATTTTGA
TACGCGTGCTGTTTTTCAGCTTACATTTCGATTGCTGTCTGTT
back to top