DC900149

Overview
NameDC900149
Unique NameDC900149
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length793
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC900149 vs. ExPASy Swiss-Prot
Match: GPMI_BACFR (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Bacteroides fragilis GN=gpmI PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.710e-21
Identity = 66/199 (33.17%), Postives = 103/199 (51.76%), Query Frame = 2
Query:    2 NGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDDVKFRTDLPNGGLANVAATFINLHGYEAPSD 598
            NG +    +ET K+ HVTFF+NG R   +D+  E+ + +PS    T++++P+M A E+ ++   AI   ++  + VN  N DMVGHTG  EA   A  A D  VK  I+A +  G   ++ ADHGNA+  +  N+ G P          T+H+L PVP                 + +G LA+VA T +++     P++
Sbjct:  317 NGKKQLHIAETEKYAHVTFFFNGGRETPYDN--EDRILVPSPKVATYDLKPEMSAYEVKDKLVAAINENKYDFIVVNYANGDMVGHTGIYEAIEKAVVAVDACVKDTIEAAKAQGYEAIIIADHGNADHAL--NEDGTP---------NTAHSLNPVPCVYVTENK------EAKVADGRLADVAPTILHILDMVQPAE 496          
BLAST of DC900149 vs. ExPASy Swiss-Prot
Match: GPMI_BACFN (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Bacteroides fragilis (strain ATCC 25285 / NCTC 9343) GN=gpmI PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.710e-21
Identity = 66/199 (33.17%), Postives = 103/199 (51.76%), Query Frame = 2
Query:    2 NGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDDVKFRTDLPNGGLANVAATFINLHGYEAPSD 598
            NG +    +ET K+ HVTFF+NG R   +D+  E+ + +PS    T++++P+M A E+ ++   AI   ++  + VN  N DMVGHTG  EA   A  A D  VK  I+A +  G   ++ ADHGNA+  +  N+ G P          T+H+L PVP                 + +G LA+VA T +++     P++
Sbjct:  317 NGKKQLHIAETEKYAHVTFFFNGGRETPYDN--EDRILVPSPKVATYDLKPEMSAYEVKDKLVAAINENKYDFIVVNYANGDMVGHTGIYEAIEKAVVAVDACVKDTIEAAKAQGYEAIIIADHGNADHAL--NEDGTP---------NTAHSLNPVPCVYVTENK------EAKVADGRLADVAPTILHILDMVQPAE 496          
BLAST of DC900149 vs. ExPASy Swiss-Prot
Match: GPMI_WOLSU (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Wolinella succinogenes GN=gpmI PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.810e-21
Identity = 66/203 (32.51%), Postives = 108/203 (53.20%), Query Frame = 2
Query:    5 GVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDDVKFRTDLPNGGLANVAATFINLHGYEAPSDYEPSL 613
            G+     +ET K+ HVTFF+NG     +++  E  V IPS S  T++++P+M A E+AE A  + + + +  + VN  N DMVGHTG+ EA + A ++ D  +  +++  +K G   ++T+DHGN E+M           +D    +LT+HT+  V   I   G+       T++  GGL  VA T + + G   P + +  L
Sbjct:  310 GLSQLHVAETEKYAHVTFFFNGGIETPWEN--ESRVLIPSPSVATYDLKPEMSAPEVAE-ATLSGMRQGYDFIVVNFANGDMVGHTGNTEAAISAVESVDRELGRLLEEAKKSGYAVILTSDHGNCEEM-----------RDERGSMLTNHTVGEVWCFILAQGV-------TEIREGGLNQVAPTVLKIMGLPTPKEMDSPL 491          
BLAST of DC900149 vs. ExPASy Swiss-Prot
Match: GPMI_HELHP (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Helicobacter hepaticus GN=gpmI PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.810e-21
Identity = 68/202 (33.66%), Postives = 107/202 (52.97%), Query Frame = 2
Query:    8 VRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDDVKFRTDLPNGGLANVAATFINLHGYEAPSDYEPSL 613
            ++ F  +ET K+ HVTFF NG R   F    EE V IPS +  T+++QP+M A  + +   KA+  + +  V VN  N DMVGHTG++EA + A +A D+ +  I+++ +K      +T+DHGN E+M           KD    +LT+HT+  V       G+ + V   + + NGGL N+A + +       P + +  L
Sbjct:  309 LKQFHTAETEKYAHVTFFLNGGREEAFIG--EERVLIPSPNVKTYDLQPQMNASAVGDAVIKAV-EQGYDFVVVNFANGDMVGHTGNLEAAIKAVEAVDKELGRIVESAQKHHYALFITSDHGNCEEM-----------KDEKGNMLTNHTVGQVWCF----GMIEGV---SKIENGGLNNIAPSVLKAMNLPIPPEMDKPL 489          
BLAST of DC900149 vs. ExPASy Swiss-Prot
Match: GPMI_CAMJE (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Campylobacter jejuni GN=gpmI PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.976e-21
Identity = 66/203 (32.51%), Postives = 105/203 (51.72%), Query Frame = 2
Query:    5 GVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDDVKFRTDLPNGGLANVAATFINLHGYEAPSDYEPSL 613
            G+     +ET K+ HVTFF+NG +    ++  E  V IPS    T++ +P+M A E+ +  KK I  +    + VN  N DMVGHTGD  AT+ A +A D  +  I++  +K    +++T+DHGN E M           +D    +LT+HT   V + +   G+   +K      N GL+N+AA+ + +   E P +   +L
Sbjct:  309 GLSQLHTAETEKYAHVTFFFNGGKEELLEN--ETRVLIPSPKVKTYDEKPQMSAFEVCDAVKKGI-EKGEDFIVVNFANGDMVGHTGDFNATIKAVEAVDTCLGEILECAKKHDYAFIITSDHGNCEAM-----------QDEKGNLLTNHTTFDVFVFVQARGV-SKIK-----DNMGLSNIAASVLKILDLEIPKEMNEAL 491          
BLAST of DC900149 vs. ExPASy Swiss-Prot
Match: GPMI_ANTSP (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Antithamnion sp. GN=gpmI PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.976e-21
Identity = 59/200 (29.50%), Postives = 108/200 (54.00%), Query Frame = 2
Query:    2 NGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDDVKFRTDL-PNGGLANVAATFINLHGYEAPSD 598
            +G++    +ET K+ HVT+F+NG     F     E +  P     T+++ P+M A ++     +AI  + +  + +N  N DM+GHTG++ AT+ A +  D+ ++ ++  IE    I ++T+DHGNA+ M          L D N +  TSH++ PVP  +    + +  K +T+L  +G LA++A T +++     P++
Sbjct:  320 SGLKQLRLAETEKYAHVTYFFNGGIEEPFPGENRELIASPKVE--TYDLPPEMSAYQLTNSLIEAINKQLYQFIVINYANPDMIGHTGNMNATIEAIEIVDQCIEKVLHTIEDTNNILIITSDHGNADYM----------LTDEN-KPCTSHSINPVPFIL----INNRQKKQTNLHSHGSLADIAPTILDILNINIPNE 502          
BLAST of DC900149 vs. ExPASy Swiss-Prot
Match: GPMI_TRIEI (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Trichodesmium erythraeum (strain IMS101) GN=gpmI PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 6.499e-21
Identity = 71/205 (34.63%), Postives = 105/205 (51.22%), Query Frame = 2
Query:    2 NGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVP-IAIGG-----PGLPDDVKFRTDLPNGGLANVAATFINLHGYEAPSD 598
            +G+R F  +ET K+ HVT+F+NG     F+    E V+ P  S   ++  P+M A ++ E A  A+  + +  + +N  N DMVGHTG ++A V A +  D  +  ++  I KVGG  ++ ADHGNAE M           +DGN    T+HT   VP I I G     PG    V  R    NG LA++A T + +     P++
Sbjct:  319 HGLRQFRTAETEKYAHVTYFFNGGLEQPFEGEDRELVQSPMVSH--YDEAPEMSAEDLTEVAIAAVKKQIYSLIVINYANPDMVGHTGAMDAAVNAVQTVDHCLGKLLQGISKVGGTAIIIADHGNAEYMWD---------EDGN--PWTAHTTNLVPFILIEGEVSKIPGHGTKVPLR---ENGCLADIAPTILEILNLPQPAE 507          
BLAST of DC900149 vs. ExPASy Swiss-Prot
Match: GPMI_SYNY3 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Synechocystis sp. (strain PCC 6803) GN=gpmI PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 6.499e-21
Identity = 69/204 (33.82%), Postives = 106/204 (51.96%), Query Frame = 2
Query:    5 GVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVP-IAIGG-----PGLPDDVKFRTDLPNGGLANVAATFINLHGYEAPSD 598
            G++ F  +ET K+ HVT+F+NG     F     E ++ P  S  T++  P+M A  + +   +A+    +  V VN  N DMVGHTG ++  + A +  D  +  ++ +  KVGG  L+TADHGNAE M   ++SG P          T+HT  PVP I + G     PG   +VK R     G LA++A T +++     P++
Sbjct:  320 GMKQFRTAETEKYPHVTYFFNGGLEQPFAGEDRELIQSPMVS--TYDKAPQMSAKAVTDAVCRAMEKGIYSLVVVNYANPDMVGHTGKLKEAIQAIETVDLNLGRLLASAAKVGGTVLITADHGNAEYM--SDESGNP---------WTAHTTNPVPFILVEGEGRKIPGHGGEVKLR---EGGKLADIAPTILDILQLPVPAE 507          
BLAST of DC900149 vs. ExPASy Swiss-Prot
Match: GPMI_STRCO (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Streptomyces coelicolor GN=gpmI PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 6.499e-21
Identity = 69/200 (34.50%), Postives = 97/200 (48.50%), Query Frame = 2
Query:    5 GVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDDVKFRTDLP------NGGLANVAATFINLHGYE 586
            G+R+   +ET KF HVT++ NG  +   D   EE+V I  +    +   P M    + +   +A        V  NL N D+VGHTG++ ATV AC+A D AV  I+ A    G   +   DHGNAE M K+         DG+++    HT  PVP+ I        V  RTD P         LA+VA T ++L G++
Sbjct:  318 GLRSVRIAETEKFEHVTYYINGRDATVRDG--EEHVRITGEGKADYVAHPHMNLDRVTDAVVEAAGRVDVDLVIANLANIDVVGHTGNLAATVTACEATDAAVDQILQAARNSGRWVVAVGDHGNAERMTKQ-------APDGSVRPYGGHTTNPVPLVI--------VPNRTDTPAPTLPGTATLADVAPTILHLLGHK 500          
BLAST of DC900149 vs. ExPASy Swiss-Prot
Match: GPMI_MOOTA (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Moorella thermoacetica (strain ATCC 39073) GN=gpmI PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 6.499e-21
Identity = 69/200 (34.50%), Postives = 103/200 (51.50%), Query Frame = 2
Query:    5 GVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSR--RFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDDVKFRTDLPNGGLANVAATFINLHGYEAPSD 598
            G++    +ET K+ HVTFF+NG     F    E+ + IPS    T++ +P M A E+ +    A+L R  ++  + +N  N DMVGHTGD+ A + A +  DE +  I+ A+ +     L+TADHGNAE+M  R   GEP          T+HT   VP       L DD      L  G L +VA T +++   + P++
Sbjct:  326 GLKQLRIAETEKYAHVTFFFNGGVEEPFPG--EDRLLIPSPKVATYDQKPSMSAREVTD----AVLERLDKYDFIVLNFANPDMVGHTGDLAAAIAAVETVDECIGRIVQAMAERRAPLLLTADHGNAEEM--REPDGEP---------HTAHTSNLVPFI-----LVDDRYRGASLREGALEDVAPTVLDILHIQQPAE 503          
The following BLAST results are available for this feature:
BLAST of DC900149 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 274
Match NameE-valueIdentityDescription
GPMI_BACFR1.710e-2133.172,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_BACFN1.710e-2133.172,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_WOLSU3.810e-2132.512,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_HELHP3.810e-2133.662,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_CAMJE4.976e-2132.512,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_ANTSP4.976e-2129.502,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_TRIEI6.499e-2134.632,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_SYNY36.499e-2133.822,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_STRCO6.499e-2134.502,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_MOOTA6.499e-2134.502,3-bisphosphoglycerate-independent phosphoglycera... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionDC900149 VSS Citrus sinensis cDNA clone VS27V69 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900149 ID=DC900149; Name=DC900149; organism=Citrus sinensis; type=EST; length=793bp
TAATGGTGTCCGGACTTTTGCTTGCAGTGAGACTGTCAAGTTTGGACATG
TCACTTTCTTCTGGAATGGAAACCGCTCTGGGTATTTCGACTCGAATTTG
GAGGAATATGTGGAAATTCCTAGTGATTCTGGAATTACTTTCAATGTACA
GCCCAAGATGAAGGCTTTGGAGATTGCTGAAAGGGCAAAGAAGGCCATCC
TTAGTCGCAGGTTCCACCAGGTGCGTGTTAACCTACCAAATAGTGACATG
GTGGGGCACACGGGAGATATTGAGGCAACAGTGGTGGCATGCAAGGCTGC
TGATGAAGCTGTCAAGATAATCATTGATGCAATAGAGAAAGTTGGTGGAA
TATATCTTGTTACTGCAGATCATGGCAATGCTGAGGACATGGTCAAGAGG
AACAAATCTGGGGAGCCTCTTCTTAAGGATGGCAATATTCAAGTGCTCAC
GTCTCACACTCTTAAACCCGTTCCCATTGCAATCGGAGGTCCTGGACTGC
CAGATGATGTCAAGTTCCGCACAGATCTCCCTAATGGTGGGCTGGCCAAT
GTAGCAGCAACTTTTATCAATCTCCATGGATATGAGGCGCCTAGTGACTA
CGAGCCAAGTCTTATTGAAGTAACTGACGACTGAGAAGTAACTGACGACT
GGGCGAACAATGGATCGTCGCCTAGATTTTATAACTCCGGAGGAATTCCG
TTAAAACGTAAAACAATAAATTGAATTTTGGGGTCTTGAATTCATTTTGA
TACGCGTGCTGTTTTTCAGCTTACATTTCGATTGCTGTCTGTT
back to top