DC900149

Overview
NameDC900149
Unique NameDC900149
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length793
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC900149 vs. ExPASy Swiss-Prot
Match: GPMI_GEOSL (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Geobacter sulfurreducens GN=gpmI PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 6.499e-21
Identity = 72/199 (36.18%), Postives = 104/199 (52.26%), Query Frame = 2
Query:    5 GVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGI-TFNVQPKMKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDDVKFRTDLPNGGLANVAATFINLHGYEAPSD 598
            G+R    +ET K+ HVTFF+NG     F    EE + IPS   + T++ +P+M A  + +   K I       V VN  N+DMVGHTG ++A V A +  DE V  +   + + GG  ++TADHGNAE MV  +++G P          T+HT + VP+      L DD +    L  G LA++A T + L G   P +
Sbjct:  322 GLRQLRIAETEKYAHVTFFFNGGVEEPFPG--EERILIPSPKEVATYDQKPEMSAPLVTDALLKRIDEGVDDVVVVNFANADMVGHTGILDAAVRAIETVDECVGRVAATVLEKGGALIITADHGNAEMMV--DETGGP---------HTAHTNERVPLI-----LVDDSRKGARLRPGTLADIAPTMLGLLGIPQPPE 502          
BLAST of DC900149 vs. ExPASy Swiss-Prot
Match: GPMI_FLAJ1 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / UW101) GN=gpmI PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 6.499e-21
Identity = 67/197 (34.01%), Postives = 98/197 (49.75%), Query Frame = 2
Query:    5 GVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDDVKFRTDLPNGGLANVAATFINLHGYEAPS 595
            G +    +ET K+ HVTFF++G R   F+   E  +   S    T+++QP+M A E+A+     +       V +N  N DMVGHTG +EA + AC+A D   K +IDA        +V ADHGN E M+  N  G P          T+HT  PVPI +    L        ++ +G L ++A T + L G + P+
Sbjct:  321 GKKQIRIAETEKYPHVTFFFSGGREIPFEG--ESRILRNSPKVATYDLQPEMSAYELADALVPELNKGEVDFVCLNFANGDMVGHTGIMEAAIKACEAVDACAKKVIDAALANDYTTIVIADHGNCETMI--NPDGSP---------NTAHTTNPVPIILVDKQL-------KNIQDGVLGDIAPTILELMGVQQPN 497          
BLAST of DC900149 vs. ExPASy Swiss-Prot
Match: GPMI_CAMJR (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Campylobacter jejuni (strain RM1221) GN=gpmI PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 8.488e-21
Identity = 66/203 (32.51%), Postives = 104/203 (51.23%), Query Frame = 2
Query:    5 GVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDDVKFRTDLPNGGLANVAATFINLHGYEAPSDYEPSL 613
            G+     +ET K+ HVTFF+NG +    ++  E  V IPS    T++ +P+M A E+ +  KK I  +    + VN  N DMVGHTGD  A + A +A D  +  II+  +K    +++T+DHGN E M           +D    +LT+HT   V + +   G+   +K      N GL+N+AA+ + +   E P +   +L
Sbjct:  309 GLSQLHTAETEKYAHVTFFFNGGKEELLEN--ETRVLIPSPKVKTYDEKPQMSAFEVCDAVKKGI-EKGEDFIVVNFANGDMVGHTGDFNAAIKAVEAVDTCLGEIIECAKKHDYAFIITSDHGNCEAM-----------QDEKGNLLTNHTTFDVFVFVQAKGV-SKIK-----DNMGLSNIAASVLKILDLEIPKEMNEAL 491          
BLAST of DC900149 vs. ExPASy Swiss-Prot
Match: GPMI_PROMM (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Prochlorococcus marinus (strain MIT 9313) GN=gpmI PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.109e-20
Identity = 66/197 (33.50%), Postives = 99/197 (50.25%), Query Frame = 2
Query:    2 NGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGG------PGLPDDVKFRTDLPNGGLANVAATFINL 574
            +G+R +  +ET K+ HVT+F NG          EE   +PS    T+++ P M A  + E    AI S  +  V +N  N DMVGHTG + A   A    D  +  ++D+  ++GG  L+TADHGNAE           L++  + Q  T+HT  PVP+ +         G  +D++ R     GGLA++A T + L
Sbjct:  329 HGLRQYRTAETEKYPHVTYFMNGGIEQPLAG--EERHLVPSPRVATYDLAPAMAADTLTESCVNAIESGVYSLVVINYANPDMVGHTGVMGAAQEAISTVDRCIGRLLDSTGRMGGTLLITADHGNAE-----------LMQGSDGQAWTAHTTNPVPVILVEGEKRKLAGYGNDIQLR---EGGGLADIAPTLLQL 509          
BLAST of DC900149 vs. ExPASy Swiss-Prot
Match: GPMI_CAMJJ (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Campylobacter jejuni subsp. jejuni serotype O:23/36 (strain 81-176) GN=gpmI PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.109e-20
Identity = 65/203 (32.02%), Postives = 104/203 (51.23%), Query Frame = 2
Query:    5 GVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDDVKFRTDLPNGGLANVAATFINLHGYEAPSDYEPSL 613
            G+     +ET K+ HVTFF+NG +    ++  E  V IPS    T++ +P+M A E+ +  KK I  +    + VN  N DMVGHTGD  A + A +A D  +  I++  +K    +++T+DHGN E M           +D    +LT+HT   V + +   G+   +K      N GL+N+AA+ + +   E P +   +L
Sbjct:  309 GLSQLHTAETEKYAHVTFFFNGGKEELLEN--ETRVLIPSPKVKTYDEKPQMSAFEVCDAVKKGI-EKGEDFIVVNFANGDMVGHTGDFNAAIKAVEAVDTCLGEIVECAKKHDYAFIITSDHGNCEAM-----------QDEKGNLLTNHTTFDVFVFVQAKGV-SKIK-----DNMGLSNIAASVLKILDLEIPKEMNEAL 491          
BLAST of DC900149 vs. ExPASy Swiss-Prot
Match: GPMI_CAMJ8 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Campylobacter jejuni subsp. jejuni serotype O:6 (strain 81116 / NCTC 11828) GN=gpmI PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.109e-20
Identity = 65/203 (32.02%), Postives = 104/203 (51.23%), Query Frame = 2
Query:    5 GVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDDVKFRTDLPNGGLANVAATFINLHGYEAPSDYEPSL 613
            G+     +ET K+ HVTFF+NG +    ++  E  V IPS    T++ +P+M A E+ +  KK I  +    + VN  N DMVGHTGD  A + A +A D  +  I++  +K    +++T+DHGN E M           +D    +LT+HT   V + +   G+   +K      N GL+N+AA+ + +   E P +   +L
Sbjct:  309 GLSQLHTAETEKYAHVTFFFNGGKEELLEN--ETRVLIPSPKVKTYDEKPQMSAFEVCDAVKKGI-EKGEDFIVVNFANGDMVGHTGDFNAAIKAVEAVDTCLGEIVECAKKHDYAFIITSDHGNCEAM-----------QDEKGNLLTNHTTFDVFVFVQAKGV-SKIK-----DNMGLSNIAASVLKILDLEIPKEMNEAL 491          
BLAST of DC900149 vs. ExPASy Swiss-Prot
Match: GPMI_CLOPH (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) GN=gpmI PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.448e-20
Identity = 66/191 (34.55%), Postives = 97/191 (50.79%), Query Frame = 2
Query:   26 SETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDDVKFRTDLPNGGLANVAATFINLHGYEAPSD 598
            +ET K+ HVTFF+NG      +   E+ + + S    T+++QP+M A  +A++  +AI S ++  + VN  N DMVGHTG  +A + A +A D  V    DA+  V G   + ADHGNAE +V    +GEP          T+HT  PVP  +      D    R     G LA++  T I +   E P +
Sbjct:  331 AETEKYAHVTFFFNGGVEAPNEG--EDRILVNSPKVATYDLQPEMSANAVADKLVEAITSLKYDVIIVNFANPDMVGHTGISDAAIKAVEAVDACVGRAYDALLSVDGQMFICADHGNAEQLVDYT-NGEP---------FTAHTTNPVPFIL--INYDDSYTLR---EGGCLADIIPTLIEMMKMEQPKE 504          
BLAST of DC900149 vs. ExPASy Swiss-Prot
Match: GPMI_STAHJ (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Staphylococcus haemolyticus (strain JCSC1435) GN=gpmI PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.891e-20
Identity = 57/199 (28.64%), Postives = 103/199 (51.76%), Query Frame = 2
Query:    2 NGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDDVKFRTDLPNGGLANVAATFINLHGYEAPSD 598
            N ++    +ET K+ HVT+F +G R+  F+      ++ P  +  T++++P+M A E+ +   + +       + +N  N DMVGH+G +E T+ A +A DE +  ++D I  + G  ++TADHGN++ ++  +            Q +T+HT  PVP+ +   G+       T    G L ++A T ++L     PSD
Sbjct:  318 NNLKQLRIAETEKYPHVTYFMSGGRNEEFEGERRRLIDSPKVA--TYDLKPEMSAYEVKDALLEELDKGDLDLIILNFANPDMVGHSGMLEPTIKAIEAVDECLGEVVDKILDMNGYAIITADHGNSDQVLTDDD-----------QPMTTHTTNPVPVIVTKEGV-------TLRETGRLGDLAPTLLDLLNVGQPSD 496          
BLAST of DC900149 vs. ExPASy Swiss-Prot
Match: GPMI_CLOTE (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Clostridium tetani GN=gpmI PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.891e-20
Identity = 63/198 (31.82%), Postives = 99/198 (50.00%), Query Frame = 2
Query:    5 GVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDDVKFRTDLPNGGLANVAATFINLHGYEAPSD 598
            G+     +ET K+ HVTFF+NG       +  E+   IPS    T++++P+M A E+ +     I S ++  + +N  N DMVGHTG  +A   A +  D+ V  I D I +  G   +TADHGN+E M+  + +G+P         +T+HT   VP       +  D K +     G LA++A T +   G + P +
Sbjct:  322 GLNQLRIAETEKYAHVTFFFNGGVET--PNKGEDRALIPSPKVATYDLKPEMSAFEVKDEVINRIESNKYDMIILNFANPDMVGHTGVFDAAKTAIEVVDKCVGEISDKILEKEGTVFITADHGNSEQMIDYS-TGKP---------MTAHTTNEVPFVY----VSKDAKDKRLKSEGILADIAPTMLTEMGVKIPEE 503          
BLAST of DC900149 vs. ExPASy Swiss-Prot
Match: GPMI_MESFL (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Mesoplasma florum GN=gpmI PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.470e-20
Identity = 71/216 (32.87%), Postives = 110/216 (50.93%), Query Frame = 2
Query:    5 GVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIP----------SDSGITFNVQPKMKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDA-IEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDDVKFRTDLPNGGLANVAATFINLHGYEAPSDY-EPSLI 616
            G++    +ET K  HVTFF++G    YF + L +  EI           S    T++++P+M A+EI ++  + +    F  + +N  N DMVGHTG+ +ATV   K  DE +K I D  + K  G+ ++TADHGNAE M+  +++G P  K         HT   VPI +       D        +  +A VA T +++ G E P +  +PS+I
Sbjct:  332 GLKQLRIAETEKIAHVTFFFDGGND-YFKNGLAKPEEISLPHASIDLISSPKVATYDLKPEMSAVEITDKLLEEVKKDEFDLIVLNFANCDMVGHTGNNDATVKGVKVLDEQLKRIHDEFVLKHNGVMVITADHGNAEIMI--DETGGPNKK---------HTTSLVPIIV------TDKTIELSDFDPAIAKVAPTILDIMGLEIPKEMTQPSMI 529          
The following BLAST results are available for this feature:
BLAST of DC900149 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 274
Match NameE-valueIdentityDescription
GPMI_GEOSL6.499e-2136.182,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_FLAJ16.499e-2134.012,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_CAMJR8.488e-2132.512,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_PROMM1.109e-2033.502,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_CAMJJ1.109e-2032.022,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_CAMJ81.109e-2032.022,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_CLOPH1.448e-2034.552,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_STAHJ1.891e-2028.642,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_CLOTE1.891e-2031.822,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_MESFL2.470e-2032.872,3-bisphosphoglycerate-independent phosphoglycera... [more]

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Properties
Property NameValue
Genbank descriptionDC900149 VSS Citrus sinensis cDNA clone VS27V69 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900149 ID=DC900149; Name=DC900149; organism=Citrus sinensis; type=EST; length=793bp
TAATGGTGTCCGGACTTTTGCTTGCAGTGAGACTGTCAAGTTTGGACATG
TCACTTTCTTCTGGAATGGAAACCGCTCTGGGTATTTCGACTCGAATTTG
GAGGAATATGTGGAAATTCCTAGTGATTCTGGAATTACTTTCAATGTACA
GCCCAAGATGAAGGCTTTGGAGATTGCTGAAAGGGCAAAGAAGGCCATCC
TTAGTCGCAGGTTCCACCAGGTGCGTGTTAACCTACCAAATAGTGACATG
GTGGGGCACACGGGAGATATTGAGGCAACAGTGGTGGCATGCAAGGCTGC
TGATGAAGCTGTCAAGATAATCATTGATGCAATAGAGAAAGTTGGTGGAA
TATATCTTGTTACTGCAGATCATGGCAATGCTGAGGACATGGTCAAGAGG
AACAAATCTGGGGAGCCTCTTCTTAAGGATGGCAATATTCAAGTGCTCAC
GTCTCACACTCTTAAACCCGTTCCCATTGCAATCGGAGGTCCTGGACTGC
CAGATGATGTCAAGTTCCGCACAGATCTCCCTAATGGTGGGCTGGCCAAT
GTAGCAGCAACTTTTATCAATCTCCATGGATATGAGGCGCCTAGTGACTA
CGAGCCAAGTCTTATTGAAGTAACTGACGACTGAGAAGTAACTGACGACT
GGGCGAACAATGGATCGTCGCCTAGATTTTATAACTCCGGAGGAATTCCG
TTAAAACGTAAAACAATAAATTGAATTTTGGGGTCTTGAATTCATTTTGA
TACGCGTGCTGTTTTTCAGCTTACATTTCGATTGCTGTCTGTT
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