DC900149

Overview
NameDC900149
Unique NameDC900149
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length793
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC900149 vs. ExPASy Swiss-Prot
Match: GPMI_HELPH (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Helicobacter pylori (strain HPAG1) GN=gpmI PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 9.384e-20
Identity = 67/196 (34.18%), Postives = 99/196 (50.51%), Query Frame = 2
Query:   26 SETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDDVKFRTDLPNGGLANVAATFINLHGYEAPSDYEPSL 613
            +ET K+ HVTFF NG     F +  E  V IPS    T++++P+M A E+     +  +      + VN  N DMVGHTG+ EA+V A +A D  +  I+   +K+    L+T+DHGN E M           KD N   LT+HT   V   + G G+         + NG L N+A++ + L G +AP+  +  L
Sbjct:  316 AETEKYAHVTFFINGGVETPFKN--ENRVLIPSPKVTTYDLKPEMSAKEVTLAVLEQ-MKLGTDLIIVNFANGDMVGHTGNFEASVKAVEAVDACLGEILSLAKKLDYAMLLTSDHGNCEHM-----------KDENQNPLTNHTAGSVYCFVLGDGV-------RSIKNGALNNIASSVLKLMGLKAPATMDEPL 490          
BLAST of DC900149 vs. ExPASy Swiss-Prot
Match: GPMI_CAMJD (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Campylobacter jejuni subsp. doylei (strain ATCC BAA-1458 / RM4099 / 269.97) GN=gpmI PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 9.384e-20
Identity = 64/203 (31.53%), Postives = 103/203 (50.74%), Query Frame = 2
Query:    5 GVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDDVKFRTDLPNGGLANVAATFINLHGYEAPSDYEPSL 613
            G+     +ET K+ HVTFF+NG +    ++  E  V I S    T++ +P+M A E+ +  KK I  +    + VN  N DMVGHTGD  A + A +A D  +  I++  +K    +++T+DHGN E M           +D    +LT+HT   V + +   G+   +K      N GL+N+AA+ + +   E P +   +L
Sbjct:  309 GLSQLHTAETEKYAHVTFFFNGGKEELLEN--ETRVLISSPKVKTYDEKPQMSAFEVCDAVKKGI-EKGEDFIVVNFANGDMVGHTGDFNAAIKAVEAVDTCLGEIVECAKKHDYAFIITSDHGNCEAM-----------QDEKGNLLTNHTTFDVFVFVQASGV-SKIK-----ANMGLSNIAASVLKILDLEIPKEMNEAL 491          
BLAST of DC900149 vs. ExPASy Swiss-Prot
Match: GPMI_DESVH (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303) GN=gpmI PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.091e-19
Identity = 63/195 (32.31%), Postives = 96/195 (49.23%), Query Frame = 2
Query:    5 GVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDDVKFRTDLPNGGLANVAATFINLHGYEA 589
            G+R    +ET K+ HVT+F N  R   F       +  P D   T++++P+M A  + +   +      +     N+ N DMVGHTG I A V AC+  D  V+ I DA+   GG  ++TADHGNAE+++  ++SG P          T+H++  VP  +   G     +  T    G L ++A T + L G  A
Sbjct:  322 GLRQLRIAETEKYAHVTYFLNCGREEPFPGEERRLLPSPRDVA-TYDLKPEMSAEAVTDTLLEEWAGGGYTLAVCNVANLDMVGHTGVIPAAVRACETVDACVRRIADAVLASGGRLVITADHGNAEELL--DESGNP---------QTAHSMNRVPFTVVEQG-----RVHTFREGGVLGDIAPTILGLWGVPA 499          
BLAST of DC900149 vs. ExPASy Swiss-Prot
Match: GPMI_MYCPE (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Mycoplasma penetrans GN=gpmI PE=3 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 6.083e-19
Identity = 65/201 (32.34%), Postives = 98/201 (48.76%), Query Frame = 2
Query:    2 NGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDDVKFRTDLPNGGLANVAATFINLHGYEAPSDYE 604
            +G+     +ET K+ HVTFF++G      D   E  + + S    T++  P M A+EI ++  + +   +F  + +N  N+DMVGHTG     V+A +A D  +  I   I+++ G   +TADHGNAE M+           D +   +T HT  PV           DVKF      G L NVA T ++  G E P+D +
Sbjct:  317 SGLTQLRIAETEKYAHVTFFFDGGVE--VDLKNESKILVDSKKVKTYDEVPAMSAVEITDKLIENL--DKFDVIVLNFANADMVGHTGKYNEAVLAIEALDSQLARIDQKIKELNGTMFITADHGNAEVML-----------DDDNNPVTKHTTNPVIFISNN----KDVKFNKP---GSLGNVAPTILDFMGLEIPADMD 495          
BLAST of DC900149 vs. ExPASy Swiss-Prot
Match: GPMI_HALSA (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Halobacterium salinarium GN=gpmI PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 7.944e-19
Identity = 60/190 (31.58%), Postives = 90/190 (47.37%), Query Frame = 2
Query:   26 SETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDDVKFRTDLPNGGLANVAATFINLHGYEAPS 595
            +E+ K+ HVT+F NG R   FD      V+ P     T++ QP M A  + +    A+       + +N  N DMVGHTGD +A + A +A D  +  ++ A+   G    +TADHGNA+D+      G P          T+HT  PVP     P   D    R     G L ++A T +++ G + P+
Sbjct:  327 AESEKYAHVTYFLNGGREVAFDGETRTIVDSPDVP--TYDEQPAMSAPAVTDTVLDALAGDDPDVLVLNYANPDMVGHTGDFDAAIEAVEAVDRELGRLVPALNDAGAHAFLTADHGNADDL------GTP------ADPHTAHTFNPVPFVSLPPASGDTAAVR---DGGALRDIAPTLLDVLGIDRPT 499          
BLAST of DC900149 vs. ExPASy Swiss-Prot
Match: GPMI_ARCB4 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Arcobacter butzleri (strain RM4018) GN=gpmI PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 7.944e-19
Identity = 66/205 (32.20%), Postives = 101/205 (49.27%), Query Frame = 2
Query:    5 GVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEY-VEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDDVKFRTDLPNGGLANVAATFINLHGYEAPSDYEPSLI 616
            G+     +ET K+ HVTFF+NG   G  +  L E  V IPS    T++++P+M A E+    + A ++     + VN  N DMVGHTG  EA V A +A D  +  I +  +K     ++T+DHGN E           ++KD    +LT+HT+  V   +  P +        ++  G L N+A T + L   E P + +  LI
Sbjct:  309 GLSQLHTAETEKYAHVTFFFNG---GVEEPVLNESRVLIPSPQVATYDLKPEMSAPEVGSAVRTA-MNNNIDFIVVNFANGDMVGHTGVFEAAVKAVEAVDFELGQIFELAKKQNYNIILTSDHGNCE-----------MMKDDEGNILTNHTVGDVYCFVYSPKV-------KEVKTGSLNNIAPTVLKLMNLEIPKEMDEPLI 491          
BLAST of DC900149 vs. ExPASy Swiss-Prot
Match: GPMI_HELPY (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Helicobacter pylori GN=gpmI PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.038e-18
Identity = 66/196 (33.67%), Postives = 98/196 (50.00%), Query Frame = 2
Query:   26 SETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDDVKFRTDLPNGGLANVAATFINLHGYEAPSDYEPSL 613
            +ET K+ HVTFF NG     F +  E  V I S    T++++P+M A E+     +  +      + VN  N DMVGHTG+ EA+V A +A D  +  I+   +K+    L+T+DHGN E M           KD N   LT+HT   V   + G G+         + NG L N+A++ + L G +AP+  +  L
Sbjct:  316 AETEKYAHVTFFINGGVETPFKN--ENRVLIQSPKVTTYDLKPEMSAKEVTLAVLEQ-MKLGTDLIIVNFANGDMVGHTGNFEASVKAVEAVDACLGEILSLAKKLDYAMLLTSDHGNCERM-----------KDENQNPLTNHTAGSVYCFVLGDGV-------KSIKNGALNNIASSVLKLMGLKAPATMDEPL 490          
BLAST of DC900149 vs. ExPASy Swiss-Prot
Match: GPMI_HELAH (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Helicobacter acinonychis (strain Sheeba) GN=gpmI PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.355e-18
Identity = 67/199 (33.67%), Postives = 101/199 (50.75%), Query Frame = 2
Query:   26 SETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRR---FHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDDVKFRTDLPNGGLANVAATFINLHGYEAPSDYEPSL 613
            +ET K+ HVTFF NG     F +  E  V I S    T++++P+M A E+      A+L +       + VN  N DMVGHTG+ EA+V A +A D ++  I+   +++    L+T+DHGN E M           KD N   LT+HT   V   + G G+         + NG L N+A++ + L G +AP+  +  L
Sbjct:  317 AETEKYAHVTFFINGGVETPFKN--ENRVLIQSPKVTTYDLKPEMSAKEVT----LAVLEQMRLGTDLIIVNFANGDMVGHTGNFEASVKAVEAVDTSLGEILSLAKELNYAMLLTSDHGNCEHM-----------KDENQNPLTNHTAGSVYCFVLGNGI-------KSIKNGALNNIASSVLKLMGIKAPATMDEPL 491          
BLAST of DC900149 vs. ExPASy Swiss-Prot
Match: GPMI_FLAPJ (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Flavobacterium psychrophilum (strain JIP02/86 / ATCC 49511) GN=gpmI PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.770e-18
Identity = 65/196 (33.16%), Postives = 98/196 (50.00%), Query Frame = 2
Query:    5 GVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDDVKFRTDLPNGGLANVAATFINLHGYEAP 592
            G +    +ET K+ HVTFF++G R   F    E  +   S    T+++QP+M A E+ E     I       + +N  N DMVGHTG + A + AC+A ++ V+ +I A        +V ADHGN E M+  N  G P          T+HT  PVPI +       D + +T + +G L ++A T ++L G + P
Sbjct:  321 GKKQIRIAETEKYPHVTFFFSGGREQPFLG--ESRILKNSPKVATYDLQPEMSAYELTEALIPEIEKTEADFICLNFANGDMVGHTGIMSAAIKACQAVNKCVEKVITAALAHNYTTIVIADHGNCETMI--NPDGTP---------NTAHTTNPVPIIL------VDKELKT-IHDGVLGDIAPTILDLMGIKKP 496          
BLAST of DC900149 vs. ExPASy Swiss-Prot
Match: GPMI_CLOK5 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Clostridium kluyveri (strain ATCC 8527 / DSM 555 / NCIMB 10680) GN=gpmI PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.311e-18
Identity = 60/191 (31.41%), Postives = 95/191 (49.74%), Query Frame = 2
Query:   26 SETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDDVKFRTDLPNGGLANVAATFINLHGYEAPSD 598
            +ET K+ HVTFF+NG       +  E+   IPS    T++++P+M A E+       +   ++  + +N  N DMVGHTG  +A   A +  DE +  I+  I +  G   +TADHGN+E MV  + +G P         +T+HT   VP         +  + R D   G LA+++ T + + G E P +
Sbjct:  329 AETEKYAHVTFFFNGGVEA--PNRNEDRELIPSPKVATYDLKPEMSAREVTSTVLDRLDQDKYDMIILNFANPDMVGHTGIFQAAKKAIEVVDECLGRIVSKILEKNGTVFITADHGNSEQMVDYS-TGNP---------MTAHTTNSVPFLYVS---KNSTELRKD---GILADISPTILQVMGLEKPKE 501          
The following BLAST results are available for this feature:
BLAST of DC900149 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 274
Match NameE-valueIdentityDescription
GPMI_HELPH9.384e-2034.182,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_CAMJD9.384e-2031.532,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_DESVH2.091e-1932.312,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_MYCPE6.083e-1932.342,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_HALSA7.944e-1931.582,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_ARCB47.944e-1932.202,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_HELPY1.038e-1833.672,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_HELAH1.355e-1833.672,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_FLAPJ1.770e-1833.162,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_CLOK52.311e-1831.412,3-bisphosphoglycerate-independent phosphoglycera... [more]

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Properties
Property NameValue
Genbank descriptionDC900149 VSS Citrus sinensis cDNA clone VS27V69 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900149 ID=DC900149; Name=DC900149; organism=Citrus sinensis; type=EST; length=793bp
TAATGGTGTCCGGACTTTTGCTTGCAGTGAGACTGTCAAGTTTGGACATG
TCACTTTCTTCTGGAATGGAAACCGCTCTGGGTATTTCGACTCGAATTTG
GAGGAATATGTGGAAATTCCTAGTGATTCTGGAATTACTTTCAATGTACA
GCCCAAGATGAAGGCTTTGGAGATTGCTGAAAGGGCAAAGAAGGCCATCC
TTAGTCGCAGGTTCCACCAGGTGCGTGTTAACCTACCAAATAGTGACATG
GTGGGGCACACGGGAGATATTGAGGCAACAGTGGTGGCATGCAAGGCTGC
TGATGAAGCTGTCAAGATAATCATTGATGCAATAGAGAAAGTTGGTGGAA
TATATCTTGTTACTGCAGATCATGGCAATGCTGAGGACATGGTCAAGAGG
AACAAATCTGGGGAGCCTCTTCTTAAGGATGGCAATATTCAAGTGCTCAC
GTCTCACACTCTTAAACCCGTTCCCATTGCAATCGGAGGTCCTGGACTGC
CAGATGATGTCAAGTTCCGCACAGATCTCCCTAATGGTGGGCTGGCCAAT
GTAGCAGCAACTTTTATCAATCTCCATGGATATGAGGCGCCTAGTGACTA
CGAGCCAAGTCTTATTGAAGTAACTGACGACTGAGAAGTAACTGACGACT
GGGCGAACAATGGATCGTCGCCTAGATTTTATAACTCCGGAGGAATTCCG
TTAAAACGTAAAACAATAAATTGAATTTTGGGGTCTTGAATTCATTTTGA
TACGCGTGCTGTTTTTCAGCTTACATTTCGATTGCTGTCTGTT
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