DC900149

Overview
NameDC900149
Unique NameDC900149
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length793
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC900149 vs. ExPASy Swiss-Prot
Match: GPMI_MYCMO (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Mycoplasma mobile GN=gpmI PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 6.725e-18
Identity = 65/205 (31.71%), Postives = 100/205 (48.78%), Query Frame = 2
Query:    2 NGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDDVKFRTDLPNGGLANVAATFINLHGYEAPSDYEPSLI 616
            NG+     +ET K+ HVTFF++G     +++  EE + I S    +F   P+M A  I +     +   ++  + +N  N DMVGHTG+++AT+ A +  D     I+ AIEK      +TADHGNAE  +  +++G P          T HT  PV + +    L         L +G LAN+A T ++      P +   SLI
Sbjct:  321 NGLSQLRIAETQKYAHVTFFFDGGNDVLYEN--EERILIDSVKADSFADYPEMSAAGITDTLIANL--GKYDVIILNYANPDMVGHTGNLKATIKALEFLDFQYGKILKAIEKTNHTLFITADHGNAE--ITEDENGNP---------ATKHTTSPVMLIVTDKNL--------KLNSGTLANIAPTILDYLKIPKPKNMLDSLI 502          
BLAST of DC900149 vs. ExPASy Swiss-Prot
Match: GPMI_MYCGA (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Mycoplasma gallisepticum GN=gpmI PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 6.725e-18
Identity = 67/197 (34.01%), Postives = 99/197 (50.25%), Query Frame = 2
Query:   26 SETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGI-TFNVQPKMKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDDVKFRTDLPNGGLANVAATFINLHGYEAPS--DYEP 607
            +ET K+ HVTFF++G     + +  E+ V +PS   + T+++ P+M A  I ++  K     ++    +N  N DMVGHTG+ EAT+   +A D  +  ++   +K       TADHGNAE+M+           D N Q +T HT   VP +I  P    +VKF      G LANVA T +     + P   D EP
Sbjct:  326 AETEKYAHVTFFFDGGVEVEYQN--EDKVLVPSRKDVKTYDLAPEMSAAAIVDQLLKVYT--KYDLTVLNFANPDMVGHTGNYEATLKGLEALDHEIGRLLADAKKNNITVFFTADHGNAEEMI-----------DENNQKVTKHTTNVVPFSITDP----NVKFTK--KEGILANVAPTILKYLEIQIPEEMDQEP 501          
BLAST of DC900149 vs. ExPASy Swiss-Prot
Match: GPMI_UREU1 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Ureaplasma urealyticum serovar 10 (strain ATCC 33699 / Western) GN=gpmI PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.556e-17
Identity = 61/197 (30.96%), Postives = 99/197 (50.25%), Query Frame = 2
Query:   26 SETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRF-HQVR-VNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDDVKFRTDLPNGGLANVAATFINLHGYEAPSDYEPS 610
            +ET K+GH++FF++G  + ++ S  +    IPS    T+++ P+M A  I     K I+   F H V  VN  N DMVGH+G+++ T+ A  + D  ++ + D  +K  G+ ++T DHGNAE M+           D N Q++TSH++  V   I    +  D           LAN+A T +     + P +   S
Sbjct:  320 AETEKYGHISFFFDGGINKHYASKTQYL--IPSQKVATYDLCPQMSASLIT----KTIIDHYFDHDVFIVNYANPDMVGHSGNMKQTIQAILSVDSEIQKLYDFFKKNNGVLMITGDHGNAETMI-----------DANGQIITSHSINDVWFIITDNNIVFD-----QTQKFSLANIAPTILEYLNIKKPIEMAAS 494          
BLAST of DC900149 vs. ExPASy Swiss-Prot
Match: GPMI_HELPJ (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Helicobacter pylori J99 GN=gpmI PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.556e-17
Identity = 66/203 (32.51%), Postives = 98/203 (48.28%), Query Frame = 2
Query:   26 SETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQVR-------VNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDDVKFRTDLPNGGLANVAATFINLHGYEAPSDYEPSL 613
            +ET K+ HVTFF NG     F +  E  V I S    T++++P+M A        K +      Q+R       VN  N DMVGHTG+ EA++ A +A D  +  I+   +++    L+T+DHGN E M           KD N   LT+HT   V   + G G+         + NG L N+A++ + L G +AP+  +  L
Sbjct:  316 AETEKYAHVTFFINGGVETPFKN--ENRVLIQSPKVTTYDLKPEMSA--------KGVTLAVLEQMRLGTDLIIVNFANGDMVGHTGNFEASIKAVEAVDACLGEILSLAKELDYAMLLTSDHGNCERM-----------KDENQNPLTNHTAGSVYCFVLGNGV-------KSIKNGALNNIASSVLKLMGIKAPATMDEPL 490          
BLAST of DC900149 vs. ExPASy Swiss-Prot
Match: GPMI_MYCGE (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Mycoplasma genitalium GN=gpmI PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 5.693e-17
Identity = 63/201 (31.34%), Postives = 94/201 (46.77%), Query Frame = 2
Query:    2 NGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVE--IPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDDVKFRTDLPNGGLANVAATFINLHGYEAPSD 598
            N ++    +ET K+ HVTFF++G     F+ NL    +  IPS    T+++ P+M    I +   + +    F    +N  N DMVGHTG+ +A + A +A D  +K I+D  +       +TADHGNAE M+           D N   +T HT+ PVP          +V F      G LAN+A T +       P +
Sbjct:  320 NNLKQLRIAETEKYAHVTFFFDGG----FEVNLSNETKTLIPSLKVATYDLAPEMSCKAITDALLEKL--NNFDFTVLNFANPDMVGHTGNYQACIKALEALDVQIKRIVDFCKANQITMFLTADHGNAEVMI-----------DNNNNPVTKHTINPVPFVC----TDKNVNFN---QTGILANIAPTILEYLNLSKPKE 496          
BLAST of DC900149 vs. ExPASy Swiss-Prot
Match: GPMI_UREPA (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Ureaplasma parvum GN=gpmI PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.657e-16
Identity = 61/183 (33.33%), Postives = 95/183 (51.91%), Query Frame = 2
Query:   26 SETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRF-HQVR-VNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDDVKFRTDLPNGGLANVAATFI 568
            +ET K+ H++FF++G  + Y+ S   +Y+ IPS    T+++ P+M A  I     K I+   F H V  VN  N DMVGH+G+++ T+ A  + D  ++ + D  EK  G+ ++T DHGNAE M+           D   QV+TSH++  V   I      D+           LAN+A T +
Sbjct:  320 AETEKYAHISFFFDGGVNKYY-STKTQYL-IPSQKVATYDLCPQMSAHLIT----KTIIDHYFDHDVFIVNYANPDMVGHSGNMQQTIEAILSVDHEIRKLYDFFEKNNGVLMITGDHGNAEMML-----------DDQKQVITSHSVNDVWFII-----TDNKVILNSTQKFSLANIAPTIL 480          
BLAST of DC900149 vs. ExPASy Swiss-Prot
Match: GPMI_UREP2 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Ureaplasma parvum serovar 3 (strain ATCC 27815 / 27 / NCTC 11736) GN=gpmI PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.657e-16
Identity = 61/183 (33.33%), Postives = 95/183 (51.91%), Query Frame = 2
Query:   26 SETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRF-HQVR-VNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDDVKFRTDLPNGGLANVAATFI 568
            +ET K+ H++FF++G  + Y+ S   +Y+ IPS    T+++ P+M A  I     K I+   F H V  VN  N DMVGH+G+++ T+ A  + D  ++ + D  EK  G+ ++T DHGNAE M+           D   QV+TSH++  V   I      D+           LAN+A T +
Sbjct:  320 AETEKYAHISFFFDGGVNKYY-STKTQYL-IPSQKVATYDLCPQMSAHLIT----KTIIDHYFDHDVFIVNYANPDMVGHSGNMQQTIEAILSVDHEIRKLYDFFEKNNGVLMITGDHGNAEMML-----------DDQKQVITSHSVNDVWFII-----TDNKVILNSTQKFSLANIAPTIL 480          
BLAST of DC900149 vs. ExPASy Swiss-Prot
Match: GPMI_MYCPN (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Mycoplasma pneumoniae GN=gpmI PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 8.221e-16
Identity = 60/199 (30.15%), Postives = 91/199 (45.73%), Query Frame = 2
Query:    2 NGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDDVKFRTDLPNGGLANVAATFINLHGYEAPSD 598
            N ++    +ET K+ HVTFF++G      D   E    +PS    T+++ P+M    I ++    I   +F    +N  N DMVGHTG+  A V   +A D  ++ IID  +       +TADHGNAE+M+           D N   +T HT+  VP          D        +  LAN+A T +   G + P++
Sbjct:  320 NKLKQLRIAETEKYAHVTFFFDGGVE--VDLPNETKCMVPSLKVATYDLAPEMACKGITDQLLNQI--NQFDLTVLNFANPDMVGHTGNYAACVQGLEALDVQIQRIIDFCKANHITLFLTADHGNAEEMI-----------DSNNNPVTKHTVNKVPFVC------TDTNIDLQQDSASLANIAPTILAYLGLKQPAE 497          
BLAST of DC900149 vs. ExPASy Swiss-Prot
Match: GPMI_MYCH2 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Mycoplasma hyopneumoniae (strain 232) GN=gpmI PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.187e-14
Identity = 65/205 (31.71%), Postives = 98/205 (47.80%), Query Frame = 2
Query:    5 GVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQ-----PKMKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDDVKFRTDLPNGGLANVAATFINLHGYEAPSDYE 604
            G R    +ET K+ HVTFF +G      +  LE    I  DS     VQ     P+M A+EI ++  +  + +++  + +N  N DMVGHTGD++AT+ A +  D  +  I    E+    + +TADHGNAE           L +D N    T HT  PV +      +  D   +  L +G LAN+A T ++  G +   D +
Sbjct:  327 GFRQLRLAETQKYAHVTFFVDGG----VELELENSDRILIDS---LKVQSYADFPQMSAVEITDKLLE--VGQKYDFIIMNFANPDMVGHTGDLKATIKAVEILDFQIGRICKWAEEKNFDFFITADHGNAE-----------LTEDENGNPSTKHTTFPVML------ISSDKTIK--LKSGKLANIAPTILDYLGLDKHPDMD 503          
BLAST of DC900149 vs. ExPASy Swiss-Prot
Match: GPMI_MYCHJ (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Mycoplasma hyopneumoniae (strain J / ATCC 25934 / NCTC 10110) GN=gpmI PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.025e-14
Identity = 65/205 (31.71%), Postives = 97/205 (47.32%), Query Frame = 2
Query:    5 GVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQ-----PKMKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDDVKFRTDLPNGGLANVAATFINLHGYEAPSDYE 604
            G R    +ET K+ HVTFF +G      +  LE    I  DS     VQ     P+M A+EI ++  +  + + +  + +N  N DMVGHTGD++AT+ A +  D  +  I    E+    + +TADHGNAE           L +D N    T HT  PV +      +  D   +  L +G LAN+A T ++  G +   D +
Sbjct:  320 GFRQLRLAETQKYAHVTFFVDGG----VELELENSDRILIDS---LKVQSYADFPQMSAVEITDKLLE--VGQNYDFIIMNFANPDMVGHTGDLKATIKAVEILDFQIGRICKWAEEKNFDFFITADHGNAE-----------LTEDENGNPSTKHTTFPVML------ISSDKTIK--LKSGKLANIAPTILDYLGLDKHPDMD 496          
The following BLAST results are available for this feature:
BLAST of DC900149 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 274
Match NameE-valueIdentityDescription
GPMI_MYCMO6.725e-1831.712,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_MYCGA6.725e-1834.012,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_UREU12.556e-1730.962,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_HELPJ2.556e-1732.512,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_MYCGE5.693e-1731.342,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_UREPA1.657e-1633.332,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_UREP21.657e-1633.332,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_MYCPN8.221e-1630.152,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_MYCH21.187e-1431.712,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_MYCHJ2.025e-1431.712,3-bisphosphoglycerate-independent phosphoglycera... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionDC900149 VSS Citrus sinensis cDNA clone VS27V69 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900149 ID=DC900149; Name=DC900149; organism=Citrus sinensis; type=EST; length=793bp
TAATGGTGTCCGGACTTTTGCTTGCAGTGAGACTGTCAAGTTTGGACATG
TCACTTTCTTCTGGAATGGAAACCGCTCTGGGTATTTCGACTCGAATTTG
GAGGAATATGTGGAAATTCCTAGTGATTCTGGAATTACTTTCAATGTACA
GCCCAAGATGAAGGCTTTGGAGATTGCTGAAAGGGCAAAGAAGGCCATCC
TTAGTCGCAGGTTCCACCAGGTGCGTGTTAACCTACCAAATAGTGACATG
GTGGGGCACACGGGAGATATTGAGGCAACAGTGGTGGCATGCAAGGCTGC
TGATGAAGCTGTCAAGATAATCATTGATGCAATAGAGAAAGTTGGTGGAA
TATATCTTGTTACTGCAGATCATGGCAATGCTGAGGACATGGTCAAGAGG
AACAAATCTGGGGAGCCTCTTCTTAAGGATGGCAATATTCAAGTGCTCAC
GTCTCACACTCTTAAACCCGTTCCCATTGCAATCGGAGGTCCTGGACTGC
CAGATGATGTCAAGTTCCGCACAGATCTCCCTAATGGTGGGCTGGCCAAT
GTAGCAGCAACTTTTATCAATCTCCATGGATATGAGGCGCCTAGTGACTA
CGAGCCAAGTCTTATTGAAGTAACTGACGACTGAGAAGTAACTGACGACT
GGGCGAACAATGGATCGTCGCCTAGATTTTATAACTCCGGAGGAATTCCG
TTAAAACGTAAAACAATAAATTGAATTTTGGGGTCTTGAATTCATTTTGA
TACGCGTGCTGTTTTTCAGCTTACATTTCGATTGCTGTCTGTT
back to top