DC900149

Overview
NameDC900149
Unique NameDC900149
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length793
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12501 contig Csv1_Contig12501:1126..1918. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900149 vs. ExPASy Swiss-Prot
Match: GPMI_MYCH7 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Mycoplasma hyopneumoniae (strain 7448) GN=gpmI PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.025e-14
Identity = 65/205 (31.71%), Postives = 97/205 (47.32%), Query Frame = 2
Query:    5 GVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQ-----PKMKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDDVKFRTDLPNGGLANVAATFINLHGYEAPSDYE 604
            G R    +ET K+ HVTFF +G      +  LE    I  DS     VQ     P+M A+EI ++  +  + + +  + +N  N DMVGHTGD++AT+ A +  D  +  I    E+    + +TADHGNAE           L +D N    T HT  PV +      +  D   +  L +G LAN+A T ++  G +   D +
Sbjct:  320 GFRQLRLAETQKYAHVTFFVDGG----VELELENSDRILIDS---LKVQSYADFPQMSAVEITDKLLE--VGQNYDFIIMNFANPDMVGHTGDLKATIKAVEILDFQIGRICKWAEEKNFDFFITADHGNAE-----------LTEDENGNPSTKHTTFPVML------ISSDKTIK--LKSGKLANIAPTILDYLGLDKHPDMD 496          
BLAST of DC900149 vs. ExPASy Swiss-Prot
Match: GPMI_MYCS5 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Mycoplasma synoviae (strain 53) GN=gpmI PE=3 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 1.313e-13
Identity = 57/191 (29.84%), Postives = 91/191 (47.64%), Query Frame = 2
Query:   26 SETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDDVKFRTDLPNGGLANVAATFINLHGYEAPSD 598
            +ET K+ HVT+F +G     + ++  + + + S    ++   P+M A EI  +      ++ F    +N  N DMVGHTG +E+T+VA +  D+ +  ++   EK      +TADHGNAE M+           D N + +T HT  PV +      L         L  G LAN+A T ++  G   P +
Sbjct:  325 AETQKYAHVTYFMDGGVDVEYKNS--KRIMVDSLKVESYADTPQMSAEEITSQVISH--AKDFDLTILNYANPDMVGHTGVLESTLVALEVLDKQLSRLVKWAEKNKITVFITADHGNAEVML-----------DENNKPVTKHTSSPVMLVTSDKSL--------KLKPGKLANIAPTVLDYMGMAKPKE 492          
BLAST of DC900149 vs. ExPASy Swiss-Prot
Match: GPMI_MYCHP (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Mycoplasma hominis (strain ATCC 23114 / IFO 14850 / NCTC 10111 / PG21) GN=gpmI PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 8.508e-13
Identity = 57/201 (28.36%), Postives = 91/201 (45.27%), Query Frame = 2
Query:    2 NGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIID--AIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDDVKFRTDLPNGGLANVAATFINLHGYEAPSD 598
            N ++    +ET K+ HVTFF++G     + +  E  + + S    +F   P M A EI +     I    F  + +N  N DMVGHTG++ AT+ A +  D   + I++  ++      + +TADHGNAE           + +D N +  T HT  PV        +        +L NG L +VA T ++      P +
Sbjct:  314 NDIKQLRLAETQKYAHVTFFFDGGVDIEYKN--ENRILVDSLKVDSFADYPHMSAKEITDSLLNNIEKNDF--IIMNYANPDMVGHTGNLNATIEAIEFLDSQFQRILEYVSLNHENVTWFITADHGNAE-----------ITEDENNKPATKHTTSPVMFICTDKNV--------NLGNGSLCDVAPTILDYLKINKPKE 491          
BLAST of DC900149 vs. ExPASy Swiss-Prot
Match: GPMI_MYCPU (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Mycoplasma pulmonis GN=gpmI PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.111e-12
Identity = 61/205 (29.76%), Postives = 93/205 (45.37%), Query Frame = 2
Query:    5 GVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDDVKFRTDLPNGGLANVAATFINLHGYEAPSDY-EPSLI 616
            G++    +ET K+ HVT+F +G     + ++    VE  S    ++   P+M A  I +   K   ++ F    +N  N DMVGHTG + +T+ A +  D  +  ++D  +K      +TADHGNAE  V  +  G P          T HT  PV +      L         L +G LAN++ T ++    E   D  E SLI
Sbjct:  322 GLKQLRLAETQKYAHVTYFMDGGVDIEYKNSKRIMVE--SQKVRSYADHPEMSAKGITDELIKN--AKDFDLTILNYANPDMVGHTGVLTSTIKAVEILDYELSRLVDFAQKNNITVFITADHGNAE--VTEDDKGNP---------QTKHTSNPVMLITSDKNL--------KLKDGKLANISPTILDYLDIEKHEDMNEESLI 503          
The following BLAST results are available for this feature:
BLAST of DC900149 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 274
Match NameE-valueIdentityDescription
GPMI_MYCH72.025e-1431.712,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_MYCS51.313e-1329.842,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_MYCHP8.508e-1328.362,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_MYCPU1.111e-1229.762,3-bisphosphoglycerate-independent phosphoglycera... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionDC900149 VSS Citrus sinensis cDNA clone VS27V69 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900149 ID=DC900149; Name=DC900149; organism=Citrus sinensis; type=EST; length=793bp
TAATGGTGTCCGGACTTTTGCTTGCAGTGAGACTGTCAAGTTTGGACATG
TCACTTTCTTCTGGAATGGAAACCGCTCTGGGTATTTCGACTCGAATTTG
GAGGAATATGTGGAAATTCCTAGTGATTCTGGAATTACTTTCAATGTACA
GCCCAAGATGAAGGCTTTGGAGATTGCTGAAAGGGCAAAGAAGGCCATCC
TTAGTCGCAGGTTCCACCAGGTGCGTGTTAACCTACCAAATAGTGACATG
GTGGGGCACACGGGAGATATTGAGGCAACAGTGGTGGCATGCAAGGCTGC
TGATGAAGCTGTCAAGATAATCATTGATGCAATAGAGAAAGTTGGTGGAA
TATATCTTGTTACTGCAGATCATGGCAATGCTGAGGACATGGTCAAGAGG
AACAAATCTGGGGAGCCTCTTCTTAAGGATGGCAATATTCAAGTGCTCAC
GTCTCACACTCTTAAACCCGTTCCCATTGCAATCGGAGGTCCTGGACTGC
CAGATGATGTCAAGTTCCGCACAGATCTCCCTAATGGTGGGCTGGCCAAT
GTAGCAGCAACTTTTATCAATCTCCATGGATATGAGGCGCCTAGTGACTA
CGAGCCAAGTCTTATTGAAGTAACTGACGACTGAGAAGTAACTGACGACT
GGGCGAACAATGGATCGTCGCCTAGATTTTATAACTCCGGAGGAATTCCG
TTAAAACGTAAAACAATAAATTGAATTTTGGGGTCTTGAATTCATTTTGA
TACGCGTGCTGTTTTTCAGCTTACATTTCGATTGCTGTCTGTT
back to top