DC900149

Overview
NameDC900149
Unique NameDC900149
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length793
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC900149 vs. ExPASy Swiss-Prot
Match: GPMI_VIBVU (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Vibrio vulnificus GN=gpmI PE=3 SV=2)

HSP 1 Score: 119.013 bits (297), Expect = 3.012e-26
Identity = 73/191 (38.22%), Postives = 108/191 (56.54%), Query Frame = 2
Query:   26 SETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDDVKFRTDLPNGGLANVAATFINLHGYEAPSD 598
            SET K+ HVTFF+NG     F     + V  P  +  T+++QP+M + E+ E+   AI S ++  +  N PN+DMVGHTG  EA   A +A D +V  +++AI++VGG  L+TADHGNAE MV     G          + T+HT  PVP+   G      V+F+     G L+++A T ++L G E P++
Sbjct:  330 SETEKYAHVTFFFNGGVETEFAGEERQLVASPKVA--TYDLQPEMSSTELTEKMVAAIKSGKYDTIICNYPNADMVGHTGVYEAAEKAIEALDASVGQVVEAIKEVGGQLLITADHGNAEMMVDPETGG----------IHTAHTSLPVPLIYVG---DKAVEFK---EGGKLSDLAPTMLSLAGLEIPAE 502          
BLAST of DC900149 vs. ExPASy Swiss-Prot
Match: GPMI_LEGPA (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Legionella pneumophila (strain Paris) GN=gpmI PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.934e-26
Identity = 70/199 (35.18%), Postives = 106/199 (53.27%), Query Frame = 2
Query:    2 NGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDDVKFRTDLPNGGLANVAATFINLHGYEAPSD 598
            +G+     +ET K+ HVTFF+NG     F +  EE + +PS    T+++QP+M A E+ +    AI SR +H +  N  N+DMVGHTG+ EATV A +  D+ ++ +  A++  GG  L+TADHGNAE+M            +   Q  T+HT +PVP    G G      +      G L ++A + + L G   P +
Sbjct:  320 HGLSQLRIAETEKYAHVTFFFNGGCESVFTN--EERIMVPSPQVATYDLQPEMSAHELTKTLIAAINSRDYHVIICNYANADMVGHTGNFEATVQAIECLDQCMQQVWQALKNNGGKLLITADHGNAEEM----------FSEATNQAHTAHTSEPVPFLYVGGG------WHFTHSEGSLIDIAPSLLALLGITPPPE 500          
BLAST of DC900149 vs. ExPASy Swiss-Prot
Match: GPMI1_METAC (2,3-bisphosphoglycerate-independent phosphoglycerate mutase 1 OS=Methanosarcina acetivorans GN=gpmI1 PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.934e-26
Identity = 72/198 (36.36%), Postives = 110/198 (55.56%), Query Frame = 2
Query:    5 GVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDDVKFRTDLPNGGLANVAATFINLHGYEAPSD 598
            G+     +ET K+ HVTFF NG     ++   E+   IPS    T++++P+M A +I +   + I S ++  + +N  N DMVGHTG  EA V A +A D+ +  I++A++++GG+ L+TADHGNAE M+  +K+GEP          T+HT  PV     G G   +VK    L  G L ++A T + L G   P +
Sbjct:  326 GLTQLRIAETEKYAHVTFFLNGGEEKRYEG--EDRCLIPSPKIATYDLKPEMSAYKITDEVVRRIQSGKYDVIVLNFANMDMVGHTGIFEAAVKAVEAVDKCIGRIVEALKEIGGVALITADHGNAEQMID-SKTGEP---------HTAHTSNPVRCIYFGNG---EVK---ALKKGKLCDLAPTLLELIGIPKPQE 505          
BLAST of DC900149 vs. ExPASy Swiss-Prot
Match: GPMI_SHISS (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Shigella sonnei (strain Ss046) GN=gpmI PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 5.137e-26
Identity = 74/191 (38.74%), Postives = 105/191 (54.97%), Query Frame = 2
Query:   26 SETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDDVKFRTDLPNGGLANVAATFINLHGYEAPSD 598
            SET K+ HVTFF+NG     F    E+ + I S    T+++QP+M + E+ E+   AI S ++  +  N PN DMVGHTG +EA V A +A D  V+ +  A+E VGG  L+TADHGNAE M +   +G         Q  T+HT  PVP+   G       K    +  G L+++A T ++L G E P +
Sbjct:  332 SETEKYAHVTFFFNGGVEESFKG--EDRILINSPKVATYDLQPEMSSAELTEKLVAAIKSGKYDTIICNYPNGDMVGHTGVMEAAVKAVEALDHCVEEVAKAVESVGGQLLITADHGNAEQM-RDPATG---------QAHTAHTNLPVPLIYVGD------KNVKAVAGGKLSDIAPTMLSLMGMEIPQE 504          
BLAST of DC900149 vs. ExPASy Swiss-Prot
Match: GPMI_SHIFL (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Shigella flexneri GN=gpmI PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 5.137e-26
Identity = 74/191 (38.74%), Postives = 105/191 (54.97%), Query Frame = 2
Query:   26 SETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDDVKFRTDLPNGGLANVAATFINLHGYEAPSD 598
            SET K+ HVTFF+NG     F    E+ + I S    T+++QP+M + E+ E+   AI S ++  +  N PN DMVGHTG +EA V A +A D  V+ +  A+E VGG  L+TADHGNAE M +   +G         Q  T+HT  PVP+   G       K    +  G L+++A T ++L G E P +
Sbjct:  332 SETEKYAHVTFFFNGGVEESFKG--EDRILINSPKVATYDLQPEMSSAELTEKLVAAIKSGKYDTIICNYPNGDMVGHTGVMEAAVKAVEALDHCVEEVAKAVESVGGQLLITADHGNAEQM-RDPATG---------QAHTAHTNLPVPLIYVGD------KNVKAVAGGKLSDIAPTMLSLMGMEIPQE 504          
BLAST of DC900149 vs. ExPASy Swiss-Prot
Match: GPMI_SHIBS (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Shigella boydii serotype 4 (strain Sb227) GN=gpmI PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 5.137e-26
Identity = 74/191 (38.74%), Postives = 105/191 (54.97%), Query Frame = 2
Query:   26 SETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDDVKFRTDLPNGGLANVAATFINLHGYEAPSD 598
            SET K+ HVTFF+NG     F    E+ + I S    T+++QP+M + E+ E+   AI S ++  +  N PN DMVGHTG +EA V A +A D  V+ +  A+E VGG  L+TADHGNAE M +   +G         Q  T+HT  PVP+   G       K    +  G L+++A T ++L G E P +
Sbjct:  332 SETEKYAHVTFFFNGGVEESFKG--EDRILINSPKVATYDLQPEMSSAELTEKLVAAIKSGKYDTIICNYPNGDMVGHTGVMEAAVKAVEALDHCVEEVAKAVESVGGQLLITADHGNAEQM-RDPATG---------QAHTAHTNLPVPLIYVGD------KNVKAVAGGKLSDIAPTMLSLMGMEIPQE 504          
BLAST of DC900149 vs. ExPASy Swiss-Prot
Match: GPMI_ECOLI (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Escherichia coli (strain K12) GN=gpmI PE=1 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 5.137e-26
Identity = 74/191 (38.74%), Postives = 105/191 (54.97%), Query Frame = 2
Query:   26 SETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDDVKFRTDLPNGGLANVAATFINLHGYEAPSD 598
            SET K+ HVTFF+NG     F    E+ + I S    T+++QP+M + E+ E+   AI S ++  +  N PN DMVGHTG +EA V A +A D  V+ +  A+E VGG  L+TADHGNAE M +   +G         Q  T+HT  PVP+   G       K    +  G L+++A T ++L G E P +
Sbjct:  332 SETEKYAHVTFFFNGGVEESFKG--EDRILINSPKVATYDLQPEMSSAELTEKLVAAIKSGKYDTIICNYPNGDMVGHTGVMEAAVKAVEALDHCVEEVAKAVESVGGQLLITADHGNAEQM-RDPATG---------QAHTAHTNLPVPLIYVGD------KNVKAVEGGKLSDIAPTMLSLMGMEIPQE 504          
BLAST of DC900149 vs. ExPASy Swiss-Prot
Match: GPMI_ECOLC (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=gpmI PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 5.137e-26
Identity = 74/191 (38.74%), Postives = 105/191 (54.97%), Query Frame = 2
Query:   26 SETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDDVKFRTDLPNGGLANVAATFINLHGYEAPSD 598
            SET K+ HVTFF+NG     F    E+ + I S    T+++QP+M + E+ E+   AI S ++  +  N PN DMVGHTG +EA V A +A D  V+ +  A+E VGG  L+TADHGNAE M +   +G         Q  T+HT  PVP+   G       K    +  G L+++A T ++L G E P +
Sbjct:  332 SETEKYAHVTFFFNGGVEESFKG--EDRILINSPKVATYDLQPEMSSAELTEKLVAAIKSGKYDTIICNYPNGDMVGHTGVMEAAVKAVEALDHCVEEVAKAVESVGGQLLITADHGNAEQM-RDPATG---------QAHTAHTNLPVPLIYVGD------KNVKAVAGGKLSDIAPTMLSLMGMEIPQE 504          
BLAST of DC900149 vs. ExPASy Swiss-Prot
Match: GPMI_ECOL6 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Escherichia coli O6 GN=gpmI PE=3 SV=2)

HSP 1 Score: 118.242 bits (295), Expect = 5.137e-26
Identity = 74/191 (38.74%), Postives = 105/191 (54.97%), Query Frame = 2
Query:   26 SETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDDVKFRTDLPNGGLANVAATFINLHGYEAPSD 598
            SET K+ HVTFF+NG     F    E+ + I S    T+++QP+M + E+ E+   AI S ++  +  N PN DMVGHTG +EA V A +A D  V+ +  A+E VGG  L+TADHGNAE M +   +G         Q  T+HT  PVP+   G       K    +  G L+++A T ++L G E P +
Sbjct:  332 SETEKYAHVTFFFNGGVEESFKG--EDRILINSPKVATYDLQPEMSSAELTEKLVAAIKSGKYDTIICNYPNGDMVGHTGVMEAAVKAVEALDHCVEEVAKAVESVGGQLLITADHGNAEQM-RDPATG---------QAHTAHTNLPVPLIYVGD------KNVKAVEGGKLSDIAPTMLSLMGMEIPQE 504          
BLAST of DC900149 vs. ExPASy Swiss-Prot
Match: GPMI_ECOL5 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=gpmI PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 5.137e-26
Identity = 74/191 (38.74%), Postives = 105/191 (54.97%), Query Frame = 2
Query:   26 SETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDDVKFRTDLPNGGLANVAATFINLHGYEAPSD 598
            SET K+ HVTFF+NG     F    E+ + I S    T+++QP+M + E+ E+   AI S ++  +  N PN DMVGHTG +EA V A +A D  V+ +  A+E VGG  L+TADHGNAE M +   +G         Q  T+HT  PVP+   G       K    +  G L+++A T ++L G E P +
Sbjct:  332 SETEKYAHVTFFFNGGVEESFKG--EDRILINSPKVATYDLQPEMSSAELTEKLVAAIKSGKYDTIICNYPNGDMVGHTGVMEAAVKAVEALDHCVEEVAKAVESVGGQLLITADHGNAEQM-RDPATG---------QAHTAHTNLPVPLIYVGD------KNVKAVEGGKLSDIAPTMLSLMGMEIPQE 504          
The following BLAST results are available for this feature:
BLAST of DC900149 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 274
Match NameE-valueIdentityDescription
GPMI_VIBVU3.012e-2638.222,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_LEGPA3.934e-2635.182,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI1_METAC3.934e-2636.362,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_SHISS5.137e-2638.742,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_SHIFL5.137e-2638.742,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_SHIBS5.137e-2638.742,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_ECOLI5.137e-2638.742,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_ECOLC5.137e-2638.742,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_ECOL65.137e-2638.742,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_ECOL55.137e-2638.742,3-bisphosphoglycerate-independent phosphoglycera... [more]

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Properties
Property NameValue
Genbank descriptionDC900149 VSS Citrus sinensis cDNA clone VS27V69 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900149 ID=DC900149; Name=DC900149; organism=Citrus sinensis; type=EST; length=793bp
TAATGGTGTCCGGACTTTTGCTTGCAGTGAGACTGTCAAGTTTGGACATG
TCACTTTCTTCTGGAATGGAAACCGCTCTGGGTATTTCGACTCGAATTTG
GAGGAATATGTGGAAATTCCTAGTGATTCTGGAATTACTTTCAATGTACA
GCCCAAGATGAAGGCTTTGGAGATTGCTGAAAGGGCAAAGAAGGCCATCC
TTAGTCGCAGGTTCCACCAGGTGCGTGTTAACCTACCAAATAGTGACATG
GTGGGGCACACGGGAGATATTGAGGCAACAGTGGTGGCATGCAAGGCTGC
TGATGAAGCTGTCAAGATAATCATTGATGCAATAGAGAAAGTTGGTGGAA
TATATCTTGTTACTGCAGATCATGGCAATGCTGAGGACATGGTCAAGAGG
AACAAATCTGGGGAGCCTCTTCTTAAGGATGGCAATATTCAAGTGCTCAC
GTCTCACACTCTTAAACCCGTTCCCATTGCAATCGGAGGTCCTGGACTGC
CAGATGATGTCAAGTTCCGCACAGATCTCCCTAATGGTGGGCTGGCCAAT
GTAGCAGCAACTTTTATCAATCTCCATGGATATGAGGCGCCTAGTGACTA
CGAGCCAAGTCTTATTGAAGTAACTGACGACTGAGAAGTAACTGACGACT
GGGCGAACAATGGATCGTCGCCTAGATTTTATAACTCCGGAGGAATTCCG
TTAAAACGTAAAACAATAAATTGAATTTTGGGGTCTTGAATTCATTTTGA
TACGCGTGCTGTTTTTCAGCTTACATTTCGATTGCTGTCTGTT
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