CN186059

Overview
NameCN186059
Unique NameCN186059
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length711
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN186059 vs. ExPASy Swiss-Prot
Match: UBC1_SCHPO (Ubiquitin-conjugating enzyme E2 1 OS=Schizosaccharomyces pombe GN=ubc1 PE=2 SV=2)

HSP 1 Score: 126.716 bits (317), Expect = 1.197e-28
Identity = 56/122 (45.90%), Postives = 80/122 (65.57%), Query Frame = -1
Query:  238 VAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSN-GSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQKYA 600
            + +D+ H +    GP  +PY GG F+V I  P DYPF+PPK+ F TK++HPN++S  G+ICLDILK+QWSP  T+   L+S+ SLL  P P +P   ++A +Y  +  ++  TAR WT  YA
Sbjct:   29 INDDISHLKGMFRGPEGTPYEGGYFVVDIEIPIDYPFRPPKMNFDTKIYHPNVSSQTGAICLDILKDQWSPVYTMKSALISLQSLLCTPEPSNPQDAQVAQVYLQNYQQFVRTAREWTSSYA 150          
BLAST of CN186059 vs. ExPASy Swiss-Prot
Match: UBC13_SCHPO (Ubiquitin-conjugating enzyme E2 13 OS=Schizosaccharomyces pombe GN=ubc13 PE=1 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.043e-28
Identity = 60/133 (45.11%), Postives = 86/133 (64.66%), Query Frame = -1
Query:  235 PPISFFAAQGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQKYAM 633
            PP    AA  P  +++ +++ T+ GP  S Y GG F + +  P +YP  PP V F TK++HPN++  G ICL  LK+ WSPAL I  VLLSI +L+  PNPDDPL  ++A ++K ++ +  A AR WT+KYA+
Sbjct:   18 PPPGIVAA--PTEDNLRYFKITMEGPQQSAYEGGKFHLELFLPDEYPMMPPNVRFLTKIYHPNVDKLGRICLSTLKKDWSPALQIRTVLLSIQALMGAPNPDDPLDNDVAKIWKENEPQAIANAREWTKKYAV 148          
BLAST of CN186059 vs. ExPASy Swiss-Prot
Match: UBC2_WHEAT (Ubiquitin-conjugating enzyme E2 2 OS=Triticum aestivum GN=UBC2 PE=1 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.550e-28
Identity = 62/133 (46.62%), Postives = 81/133 (60.90%), Query Frame = -1
Query:  250 PPISFFAAQGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKY-----EATARSWT 633
            PP     A  P   ++  W A I GP D+P+ GG F +T+ F  DYP KPP V F +++FHPNI ++GSICLDIL+ QWSP   ++ +L SI SLL DPNP+ P   E A MY  +K +Y     E   +SWT
Sbjct:   20 PPAGISGA--PHDNNITLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMYSENKREYNRKVREVVEQSWT 150          
BLAST of CN186059 vs. ExPASy Swiss-Prot
Match: UBC27_ARATH (Ubiquitin carrier protein E2 27 OS=Arabidopsis thaliana GN=UBC27 PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.014e-27
Identity = 59/123 (47.97%), Postives = 82/123 (66.67%), Query Frame = -1
Query:  238 PVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINS-NGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQKYA 603
            P ++++     TI GP  +PY GG F + I  P  YPF+PPK+ F TKV+HPNI+S +G+ICLDILK+QWSPALT+   L+SI +LL+ P P DP    +A  Y  +   + +TAR WT+ +A
Sbjct:   27 PKSDNLTRLTGTIPGPIGTPYEGGTFQIDITMPDGYPFEPPKMQFSTKVWHPNISSQSGAICLDILKDQWSPALTLKTALVSIQALLSAPEPKDPQDAVVAEQYMKNYQVFVSTARYWTETFA 149          
BLAST of CN186059 vs. ExPASy Swiss-Prot
Match: UBC1_ARATH (Ubiquitin-conjugating enzyme E2 1 OS=Arabidopsis thaliana GN=UBC1 PE=1 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.324e-27
Identity = 61/133 (45.86%), Postives = 79/133 (59.40%), Query Frame = -1
Query:  250 PPISFFAAQGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATAR-----SWT 633
            PP     A  P   ++  W A I GP D+P+ GG F +++ F  DYP KPP V F +++FHPNI ++GSICLDIL+ QWSP   ++ +L SI SLL DPNP+ P   E A MY   K +Y    R     SWT
Sbjct:   20 PPAGISGA--PQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMYSESKREYNRRVRDVVEQSWT 150          
BLAST of CN186059 vs. ExPASy Swiss-Prot
Match: UBC2_MEDSA (Ubiquitin-conjugating enzyme E2 2 OS=Medicago sativa GN=UBC2 PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.729e-27
Identity = 60/133 (45.11%), Postives = 81/133 (60.90%), Query Frame = -1
Query:  250 PPISFFAAQGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKY-----EATARSWT 633
            PP     A  P   ++  W A I GP D+P+ GG F +++ F  DYP KPP V F +++FHPNI ++GSICLDIL+ QWSP   ++ +L SI SLL DPNP+ P   E A M+  +K +Y     E   +SWT
Sbjct:   20 PPAGISGA--PQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREVVEQSWT 150          
BLAST of CN186059 vs. ExPASy Swiss-Prot
Match: UBE2K_MOUSE (Ubiquitin-conjugating enzyme E2 K OS=Mus musculus GN=Ube2k PE=2 SV=3)

HSP 1 Score: 122.479 bits (306), Expect = 2.258e-27
Identity = 59/122 (48.36%), Postives = 79/122 (64.75%), Query Frame = -1
Query:  238 VAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINS-NGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQKYA 600
            V E+    +  I GPPD+PY GG + + I  P  YPF PPKV F TK++HPNI+S  G+ICLDILK+QW+ A+T+  VLLS+ +LL    PDDP    +A+ YK +   ++ TAR W   YA
Sbjct:   32 VDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVYA 153          
BLAST of CN186059 vs. ExPASy Swiss-Prot
Match: UBE2K_HUMAN (Ubiquitin-conjugating enzyme E2 K OS=Homo sapiens GN=UBE2K PE=1 SV=3)

HSP 1 Score: 122.479 bits (306), Expect = 2.258e-27
Identity = 59/122 (48.36%), Postives = 79/122 (64.75%), Query Frame = -1
Query:  238 VAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINS-NGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQKYA 600
            V E+    +  I GPPD+PY GG + + I  P  YPF PPKV F TK++HPNI+S  G+ICLDILK+QW+ A+T+  VLLS+ +LL    PDDP    +A+ YK +   ++ TAR W   YA
Sbjct:   32 VDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVYA 153          
BLAST of CN186059 vs. ExPASy Swiss-Prot
Match: UBE2K_BOVIN (Ubiquitin-conjugating enzyme E2 K OS=Bos taurus GN=UBE2K PE=1 SV=3)

HSP 1 Score: 122.479 bits (306), Expect = 2.258e-27
Identity = 59/122 (48.36%), Postives = 79/122 (64.75%), Query Frame = -1
Query:  238 VAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINS-NGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQKYA 600
            V E+    +  I GPPD+PY GG + + I  P  YPF PPKV F TK++HPNI+S  G+ICLDILK+QW+ A+T+  VLLS+ +LL    PDDP    +A+ YK +   ++ TAR W   YA
Sbjct:   32 VDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVYA 153          
BLAST of CN186059 vs. ExPASy Swiss-Prot
Match: UBC2_ARATH (Ubiquitin-conjugating enzyme E2 2 OS=Arabidopsis thaliana GN=UBC2 PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.258e-27
Identity = 60/133 (45.11%), Postives = 80/133 (60.15%), Query Frame = -1
Query:  250 PPISFFAAQGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKY-----EATARSWT 633
            PP     A  P   ++  W A I GP D+P+ GG F +++ F  DYP KPP V F +++FHPNI ++GSICLDIL+ QWSP   ++ +L SI SLL DPNP+ P   E A M+   K +Y     E   +SWT
Sbjct:   20 PPAGISGA--PQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSESKREYNRRVREVVEQSWT 150          
The following BLAST results are available for this feature:
BLAST of CN186059 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 254
Match NameE-valueIdentityDescription
UBC1_SCHPO1.197e-2845.90Ubiquitin-conjugating enzyme E2 1 OS=Schizosacchar... [more]
UBC13_SCHPO2.043e-2845.11Ubiquitin-conjugating enzyme E2 13 OS=Schizosaccha... [more]
UBC2_WHEAT4.550e-2846.62Ubiquitin-conjugating enzyme E2 2 OS=Triticum aest... [more]
UBC27_ARATH1.014e-2747.97Ubiquitin carrier protein E2 27 OS=Arabidopsis tha... [more]
UBC1_ARATH1.324e-2745.86Ubiquitin-conjugating enzyme E2 1 OS=Arabidopsis t... [more]
UBC2_MEDSA1.729e-2745.11Ubiquitin-conjugating enzyme E2 2 OS=Medicago sati... [more]
UBE2K_MOUSE2.258e-2748.36Ubiquitin-conjugating enzyme E2 K OS=Mus musculus ... [more]
UBE2K_HUMAN2.258e-2748.36Ubiquitin-conjugating enzyme E2 K OS=Homo sapiens ... [more]
UBE2K_BOVIN2.258e-2748.36Ubiquitin-conjugating enzyme E2 K OS=Bos taurus GN... [more]
UBC2_ARATH2.258e-2745.11Ubiquitin-conjugating enzyme E2 2 OS=Arabidopsis t... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002E21_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002E21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186059 ID=CN186059; Name=CN186059; organism=Citrus sinensis; type=EST; length=711bp
TTTTTTTTTTTTTTTTTAGGACAATAAACTACATTGAATGACCGTAGTTT
CAAACAAGAAACATTCAACATTAACAAAAACGTCTTGGCCTTGCAACTCC
TCCCCAAACATCCTTCCTCATTACTAAAATACAAAACATCCCCTTCCCGA
AGCAAGATTGAAGAAAAAGGAGAAAAAAACACAACATATTTCATATGAAT
GAGTTCCATTTCTGCAATATCCAAACAACTATCCCATGGCATACTTCTGT
GTCCAGCTCCTGGCAGTGGCTTCATATTTGGCCTTGTCGGACTTGTACAT
GTGAGCAATCTCCGGTACAAGCGGGTCGTCAGGATTTGGGTCAGTAAGCA
ACGAGCAGATAGAAAGCAGGACCTTTGAAATGGTAAGAGCTGGGCTCCAC
TGTTCTTTAAGGATATCAAGACATATGCTTCCATTGCTGTTGATGTTTGG
GTGGAAAACCTTGGTCCTAAAAGCAACCTTTGGGGGCTTGAAGGGATAAT
CCGGAGGAAAATGAATGGTAACCAAAAATACACCTCCTGCATATGGACTA
TCAGGGGGGCCCATAATTGTTGCTTGCCAGTGGAACATGTCTTCAGCCAC
CGGACCTTGTGCGGCGAAAAAGGAGATCGGAGGGCAATAGCAGTGAGAAA
GGGGAACGGCTTCGGAGCAGATCTGCGGCAGCTACTGGCCGTCCCGACCT
CTCTCCTCCCT
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