CN186059

Overview
NameCN186059
Unique NameCN186059
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length711
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN186059 vs. ExPASy Swiss-Prot
Match: UBE2A_MOUSE (Ubiquitin-conjugating enzyme E2 A OS=Mus musculus GN=Ube2a PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.239e-25
Identity = 54/121 (44.63%), Postives = 76/121 (62.81%), Query Frame = -1
Query:  271 PPISFFAAQGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYE 633
            PP     A  P   ++  W A I GP  +P+  G F +TI F  +YP KPP V F +K+FHPN+ ++GSICLDIL+ +WSP   +S +L SI SLL +PNP+ P   + A +Y+ +K +YE
Sbjct:   20 PPAGVSGA--PSENNIMVWNAVIFGPEGTPFEDGTFKLTIEFTEEYPNKPPTVRFVSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYE 138          
BLAST of CN186059 vs. ExPASy Swiss-Prot
Match: UBE2A_HUMAN (Ubiquitin-conjugating enzyme E2 A OS=Homo sapiens GN=UBE2A PE=2 SV=2)

HSP 1 Score: 116.701 bits (291), Expect = 1.239e-25
Identity = 54/121 (44.63%), Postives = 76/121 (62.81%), Query Frame = -1
Query:  271 PPISFFAAQGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYE 633
            PP     A  P   ++  W A I GP  +P+  G F +TI F  +YP KPP V F +K+FHPN+ ++GSICLDIL+ +WSP   +S +L SI SLL +PNP+ P   + A +Y+ +K +YE
Sbjct:   20 PPAGVSGA--PSENNIMVWNAVIFGPEGTPFEDGTFKLTIEFTEEYPNKPPTVRFVSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYE 138          
BLAST of CN186059 vs. ExPASy Swiss-Prot
Match: UBC2_TRIHA (Ubiquitin-conjugating enzyme E2 2 OS=Trichoderma harzianum GN=UBC2 PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.239e-25
Identity = 54/132 (40.91%), Postives = 81/132 (61.36%), Query Frame = -1
Query:  253 PPISFFAAQGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKY-----EATARSW 633
            PP    A+  P+ +++  W A I+GP D+P+  G F + + F   YP KPP+V F +++FHPN+ +NG +CLDIL+ +WSP   ++ VL SI SLL DPN   P   E +++YK ++ +Y     E   RSW
Sbjct:   20 PPAGVSAS--PIPDNVMTWNAVIIGPADTPFEDGTFRLVMQFEEQYPNKPPQVKFISQMFHPNVYANGELCLDILQNRWSPTYDVAAVLTSIQSLLNDPNTGSPANVEASNLYKDNRREYIKRVRETVERSW 149          
BLAST of CN186059 vs. ExPASy Swiss-Prot
Match: UBC2_EMENI (Ubiquitin-conjugating enzyme E2 2 OS=Emericella nidulans GN=uvsJ PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.618e-25
Identity = 53/134 (39.55%), Postives = 81/134 (60.45%), Query Frame = -1
Query:  247 PPISFFAAQGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKY-----EATARSWTQ 633
            PP    A+  PVA+++  W A I+GP D+P+  G F + +HF   YP KPP V F +++FHPN+   G +CLDIL+ +WSP   ++ +L SI SLL DPN   P   E +++Y+ ++ +Y     E   +SW +
Sbjct:   20 PPAGVSAS--PVADNVMTWNAVIIGPADTPFEDGTFRLVMHFEEQYPNKPPGVKFISQMFHPNVYGTGELCLDILQNRWSPTYDVAAILTSIQSLLNDPNTSSPANVEASNLYRDNRKEYIKRVRETVEKSWEE 151          
BLAST of CN186059 vs. ExPASy Swiss-Prot
Match: UBE2T_BOVIN (Ubiquitin-conjugating enzyme E2 T OS=Bos taurus GN=UBE2T PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.761e-25
Identity = 52/117 (44.44%), Postives = 78/117 (66.67%), Query Frame = -1
Query:  238 QATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL----KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQKYA 576
            +A I+G  ++PY  GVF + +H P  YPF+PP++ F T ++HPNI+S G ICLD+L    K  W P+L I+ +L  I  L+ +PNPDDPL+ +I+  +K +K  +   AR WT+K+A
Sbjct:   35 RAQILGGANTPYEKGVFKLEVHIPERYPFEPPQIRFLTPIYHPNIDSAGRICLDVLKLPPKGAWRPSLNIATLLTCIQQLMAEPNPDDPLMADISSEFKYNKPVFFKNARQWTEKHA 151          
BLAST of CN186059 vs. ExPASy Swiss-Prot
Match: UBC2_YEAST (Ubiquitin-conjugating enzyme E2 2 OS=Saccharomyces cerevisiae GN=RAD6 PE=1 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.761e-25
Identity = 51/122 (41.80%), Postives = 76/122 (62.30%), Query Frame = -1
Query:  253 PVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKY-----EATARSW 603
            P+ +++  W A I+GP D+PY  G F + + F  +YP KPP V F +++FHPN+ +NG ICLDIL+ +W+P   ++ +L SI SL  DPNP  P   E A ++K  K++Y     E   +SW
Sbjct:   28 PLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSEMFHPNVYANGEICLDILQNRWTPTYDVASILTSIQSLFNDPNPASPANVEAATLFKDHKSQYVKRVKETVEKSW 149          
BLAST of CN186059 vs. ExPASy Swiss-Prot
Match: UBC2_ASHGO (Ubiquitin-conjugating enzyme E2 2 OS=Ashbya gossypii GN=UBC2 PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.761e-25
Identity = 51/122 (41.80%), Postives = 76/122 (62.30%), Query Frame = -1
Query:  253 PVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKY-----EATARSW 603
            P+ +++  W A I+GP D+PY  G F + + F  +YP KPP V F +++FHPN+ +NG ICLDIL+ +W+P   ++ +L SI SL  DPNP  P   E A ++K  K++Y     E   +SW
Sbjct:   28 PLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSEMFHPNVYANGEICLDILQNRWTPTYDVASILTSIQSLFNDPNPASPANVEAATLFKDHKSQYVKRVKETVEKSW 149          
BLAST of CN186059 vs. ExPASy Swiss-Prot
Match: UBC37_ARATH (Probable ubiquitin carrier protein E2 37 OS=Arabidopsis thaliana GN=UBC37 PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.605e-25
Identity = 56/116 (48.28%), Postives = 78/116 (67.24%), Query Frame = -1
Query:  238 ATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL----KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQKYA 573
            A I GP D+ YA G+F + I  P  YPF+PP V+F T ++HPNI+++G ICLDIL    K  W P+L IS VL S+  LL++PNPDD L+ E++  YK ++  ++  AR  T+KYA
Sbjct:   49 AQIEGPEDTVYANGIFNLKIQIPERYPFQPPIVSFATPIYHPNIDNSGRICLDILNLPPKGAWQPSLNISTVLTSMRLLLSEPNPDDGLMCEVSREYKYNRQTFDYKAREMTEKYA 164          
BLAST of CN186059 vs. ExPASy Swiss-Prot
Match: UBE2T_HUMAN (Ubiquitin-conjugating enzyme E2 T OS=Homo sapiens GN=UBE2T PE=1 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.709e-25
Identity = 54/123 (43.90%), Postives = 81/123 (65.85%), Query Frame = -1
Query:  238 EDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL----KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQKYA 594
            + M   +A I+G  ++PY  GVF + +  P  YPF+PP++ F T ++HPNI+S G ICLD+L    K  W P+L I+ VL SI  L+++PNPDDPL+ +I+  +K +K  +   AR WT+K+A
Sbjct:   29 DQMDDLRAQILGGANTPYEKGVFKLEVIIPERYPFEPPQIRFLTPIYHPNIDSAGRICLDVLKLPPKGAWRPSLNIATVLTSIQLLMSEPNPDDPLMADISSEFKYNKPAFLKNARQWTEKHA 151          
BLAST of CN186059 vs. ExPASy Swiss-Prot
Match: UBC2_YARLI (Ubiquitin-conjugating enzyme E2 2 OS=Yarrowia lipolytica GN=UBC2 PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.709e-25
Identity = 51/123 (41.46%), Postives = 76/123 (61.79%), Query Frame = -1
Query:  250 PVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATAR-----SWT 603
            PVA+++  W A I+GP ++P+  G F + + F   YP KPP V F +++FHPN+ S+G +CLDIL+ +WSP   ++ +L S+ SLL DPN   P   E + +YK  + +YE   R     SWT
Sbjct:   28 PVADNVLTWNAVIIGPAETPFEDGTFRMVLQFDEQYPNKPPAVKFVSQMFHPNVYSSGELCLDILQNRWSPTYDVAAILTSVQSLLNDPNTSSPANVEASMLYKDHRQQYEKRVRDTVEASWT 150          
The following BLAST results are available for this feature:
BLAST of CN186059 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 254
Match NameE-valueIdentityDescription
UBE2A_MOUSE1.239e-2544.63Ubiquitin-conjugating enzyme E2 A OS=Mus musculus ... [more]
UBE2A_HUMAN1.239e-2544.63Ubiquitin-conjugating enzyme E2 A OS=Homo sapiens ... [more]
UBC2_TRIHA1.239e-2540.91Ubiquitin-conjugating enzyme E2 2 OS=Trichoderma h... [more]
UBC2_EMENI1.618e-2539.55Ubiquitin-conjugating enzyme E2 2 OS=Emericella ni... [more]
UBE2T_BOVIN2.761e-2544.44Ubiquitin-conjugating enzyme E2 T OS=Bos taurus GN... [more]
UBC2_YEAST2.761e-2541.80Ubiquitin-conjugating enzyme E2 2 OS=Saccharomyces... [more]
UBC2_ASHGO2.761e-2541.80Ubiquitin-conjugating enzyme E2 2 OS=Ashbya gossyp... [more]
UBC37_ARATH3.605e-2548.28Probable ubiquitin carrier protein E2 37 OS=Arabid... [more]
UBE2T_HUMAN4.709e-2543.90Ubiquitin-conjugating enzyme E2 T OS=Homo sapiens ... [more]
UBC2_YARLI4.709e-2541.46Ubiquitin-conjugating enzyme E2 2 OS=Yarrowia lipo... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0002E21_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002E21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186059 ID=CN186059; Name=CN186059; organism=Citrus sinensis; type=EST; length=711bp
TTTTTTTTTTTTTTTTTAGGACAATAAACTACATTGAATGACCGTAGTTT
CAAACAAGAAACATTCAACATTAACAAAAACGTCTTGGCCTTGCAACTCC
TCCCCAAACATCCTTCCTCATTACTAAAATACAAAACATCCCCTTCCCGA
AGCAAGATTGAAGAAAAAGGAGAAAAAAACACAACATATTTCATATGAAT
GAGTTCCATTTCTGCAATATCCAAACAACTATCCCATGGCATACTTCTGT
GTCCAGCTCCTGGCAGTGGCTTCATATTTGGCCTTGTCGGACTTGTACAT
GTGAGCAATCTCCGGTACAAGCGGGTCGTCAGGATTTGGGTCAGTAAGCA
ACGAGCAGATAGAAAGCAGGACCTTTGAAATGGTAAGAGCTGGGCTCCAC
TGTTCTTTAAGGATATCAAGACATATGCTTCCATTGCTGTTGATGTTTGG
GTGGAAAACCTTGGTCCTAAAAGCAACCTTTGGGGGCTTGAAGGGATAAT
CCGGAGGAAAATGAATGGTAACCAAAAATACACCTCCTGCATATGGACTA
TCAGGGGGGCCCATAATTGTTGCTTGCCAGTGGAACATGTCTTCAGCCAC
CGGACCTTGTGCGGCGAAAAAGGAGATCGGAGGGCAATAGCAGTGAGAAA
GGGGAACGGCTTCGGAGCAGATCTGCGGCAGCTACTGGCCGTCCCGACCT
CTCTCCTCCCT
back to top