CN186059

Overview
NameCN186059
Unique NameCN186059
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length711
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN186059 vs. ExPASy Swiss-Prot
Match: UBC2_USTMA (Ubiquitin-conjugating enzyme E2 2 OS=Ustilago maydis GN=UBC2 PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.709e-25
Identity = 49/110 (44.55%), Postives = 71/110 (64.55%), Query Frame = -1
Query:  274 PVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKY 603
            P A+++  W A I GP D+P+  G F + + F   YP KPP V F +K+FHPN+ +NG +CLDIL+ +WSP   ++ +L SI SLL DPNP+ P   E A +Y+ +  +Y
Sbjct:   28 PCADNLMIWNAVIFGPADTPFEDGTFKLVLTFDESYPNKPPTVKFLSKMFHPNVYANGELCLDILQNRWSPTYDVAAILTSIQSLLHDPNPNSPANAEAASLYRENMKEY 137          
BLAST of CN186059 vs. ExPASy Swiss-Prot
Match: UBC2_NECHA (Ubiquitin-conjugating enzyme E2 2 OS=Nectria haematococca GN=UBC2 PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 6.150e-25
Identity = 52/130 (40.00%), Postives = 79/130 (60.77%), Query Frame = -1
Query:  244 PPISFFAAQGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQK 633
            PP    A+  PV +++  W A I+GP D+P+  G F + + F   YP KPP+V F +++FHPN+ + G +CLDIL+ +WSP   ++ VL SI SLL DPN   P   E +++YK ++ +Y    R   +K
Sbjct:   20 PPAGVSAS--PVPDNVMTWNAVIIGPADTPFEDGTFRLVMQFEEQYPNKPPQVKFISEMFHPNVYATGELCLDILQNRWSPTYDVAAVLTSIQSLLNDPNTGSPANVEASNLYKDNRKEYTKRVRETVEK 147          
BLAST of CN186059 vs. ExPASy Swiss-Prot
Match: UBC2_NEUCR (Ubiquitin-conjugating enzyme E2 2 OS=Neurospora crassa GN=mus-8 PE=3 SV=3)

HSP 1 Score: 114.005 bits (284), Expect = 8.032e-25
Identity = 52/130 (40.00%), Postives = 78/130 (60.00%), Query Frame = -1
Query:  244 PPISFFAAQGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQK 633
            PP    A+  PV +++  W A I+GP D+P+  G F + +HF   YP KPP V F +++FHPN+ + G +CLDIL+ +WSP   ++ VL SI SLL DPN       E +++YK ++ +Y    R   +K
Sbjct:   20 PPAGVSAS--PVPDNVMTWNAVIIGPADTPFEDGTFRLVMHFEEQYPNKPPSVKFISEMFHPNVYATGELCLDILQNRWSPTYDVAAVLTSIQSLLNDPNTGSRANVEASNLYKDNRKEYHKRVRETVEK 147          
BLAST of CN186059 vs. ExPASy Swiss-Prot
Match: UBC2_KLULA (Ubiquitin-conjugating enzyme E2 2 OS=Kluyveromyces lactis GN=UBC2 PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 8.032e-25
Identity = 50/122 (40.98%), Postives = 76/122 (62.30%), Query Frame = -1
Query:  253 PVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKY-----EATARSW 603
            P+ +++  W A I+GP D+PY  G F + + F  +YP KPP V F +++FHPN+ +NG ICLDIL+ +W+P   ++ +L SI SL  DPNP  P   E A +++  K++Y     E   +SW
Sbjct:   28 PLPDNVMIWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSEMFHPNVYANGEICLDILQNRWTPTYDVASILTSIQSLFNDPNPASPANVEAATLFQDHKSQYVKRVKETVEKSW 149          
BLAST of CN186059 vs. ExPASy Swiss-Prot
Match: UBC2_DICDI (Ubiquitin-conjugating enzyme E2 2 OS=Dictyostelium discoideum GN=ubc2 PE=3 SV=2)

HSP 1 Score: 114.005 bits (284), Expect = 8.032e-25
Identity = 56/133 (42.11%), Postives = 80/133 (60.15%), Query Frame = -1
Query:  250 PPISFFAAQGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKY-----EATARSWT 633
            PP     A  P+  ++  WQA I GP DS + G  F +++ F  +YP   P V F +K+FHPN+ ++GSICLDIL+ QWSP   I+ +L SI SLL DPNP+ P   E A +++ +K +Y     E   +SW+
Sbjct:   20 PPAGISGA--PLENNILMWQAVIFGPDDSIWEGATFKLSLQFSEEYPNDAPTVKFLSKMFHPNVYADGSICLDILQNQWSPIYDIAAILTSIQSLLCDPNPNSPANSESARLFRENKREYNRKVKEIVEQSWS 150          
BLAST of CN186059 vs. ExPASy Swiss-Prot
Match: UBC2_DEBHA (Ubiquitin-conjugating enzyme E2 2 OS=Debaryomyces hansenii GN=UBC2 PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 8.032e-25
Identity = 50/124 (40.32%), Postives = 76/124 (61.29%), Query Frame = -1
Query:  247 PVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKY-----EATARSWTQ 603
            P+ +++  W A I+GP D+P+  G F + + F   YP KPP V F +++FHPN+ ++G +CLDIL+ +WSP   +S +L SI SLL DPN   P   E A++YK  +++Y     E    SW +
Sbjct:   28 PLPDNVMSWNAVIIGPADTPFEDGTFRLILQFDEQYPNKPPSVKFISEMFHPNVYASGELCLDILQNRWSPTYDVSSILTSIQSLLNDPNISSPANVEAANLYKDHRSQYIKRVRETVENSWNE 151          
BLAST of CN186059 vs. ExPASy Swiss-Prot
Match: UBC16_SCHPO (Ubiquitin-conjugating enzyme E2 16 OS=Schizosaccharomyces pombe GN=ubc16 PE=2 SV=2)

HSP 1 Score: 113.62 bits (283), Expect = 1.049e-24
Identity = 56/127 (44.09%), Postives = 80/127 (62.99%), Query Frame = -1
Query:  232 PVAE-DMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNIN-SNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKS-DKAKYEATARSWTQKYAMG 603
            PV + DMFHW+A I GP ++PY GG +++ IH    YP  PP V F+TK+ HPNI+ +NG +C+DILK  WSPA ++    L+I SLL++ +   PL  + A + ++ DK  Y +  R  T  YA G
Sbjct:   28 PVTDVDMFHWKAVIEGPTETPYEGGQWVLDIHVHEGYPISPPSVYFQTKIVHPNISWTNGEVCMDILKTHWSPAWSLQSACLAIISLLSNYDASSPLNVDAAKLLRTGDKTAYNSLVRCTTYLYAKG 154          
BLAST of CN186059 vs. ExPASy Swiss-Prot
Match: UE2NL_HUMAN (Putative ubiquitin-conjugating enzyme E2 N-like OS=Homo sapiens GN=UBE2NL PE=5 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.370e-24
Identity = 53/106 (50.00%), Postives = 72/106 (67.92%), Query Frame = -1
Query:  235 DSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQKYAM 552
            DSP+ GG F   +    +YP   PKV F TK++HPN++    I LDILK++WSPAL I  VLLSI +LL  PNPDDPL  ++   +K+++A+   TAR+WT+ YAM
Sbjct:   45 DSPFEGGTFKRELLLAEEYPMAAPKVRFMTKIYHPNVDKLERISLDILKDKWSPALQIRTVLLSIQALLNAPNPDDPLANDVVEQWKTNEAQAIETARAWTRLYAM 150          
BLAST of CN186059 vs. ExPASy Swiss-Prot
Match: UBC1_CAEEL (Ubiquitin-conjugating enzyme E2 1 OS=Caenorhabditis elegans GN=ubc-1 PE=1 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.370e-24
Identity = 50/121 (41.32%), Postives = 78/121 (64.46%), Query Frame = -1
Query:  271 PPISFFAAQGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYE 633
            PP     A  P  +++  W+A I GP ++P+  G F +++ F  +YP KPP V F +K+FHPN+ ++GSICLDIL+ +WSP   ++ +L SI SLL +PNP+ P     A +Y+ ++ +YE
Sbjct:   20 PPAGVSGA--PTEDNILTWEAIIFGPQETPFEDGTFKLSLEFTEEYPNKPPTVKFISKMFHPNVYADGSICLDILQNRWSPTYDVAAILTSIQSLLDEPNPNSPANSLAAQLYQENRREYE 138          
BLAST of CN186059 vs. ExPASy Swiss-Prot
Match: UBE2C_DICDI (Probable ubiquitin-conjugating enzyme E2 C OS=Dictyostelium discoideum GN=ube2c PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.789e-24
Identity = 60/144 (41.67%), Postives = 86/144 (59.72%), Query Frame = -1
Query:  259 SEAVPLSHCYCPPISFFAAQGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKS--------DKAKYEATAR 666
            SE + L     P IS F    P  +++F+W  TI G  D+ Y    F +++ FP DYP+KPP V F T+ FHPN+++NG+ICLDILK++WSP   +  +L+SI SLL +PN + PL    A ++ +        DK   EAT+R
Sbjct:   13 SELMNLMMGPSPGISAF----PDGDNIFNWIGTIQGAKDTVYEQMEFKMSLKFPTDYPYKPPTVKFETQCFHPNVDNNGNICLDILKDKWSPVYNVRSLLISIQSLLGEPNNESPLNSYAASLWSNQDEYKKVLDKRYQEATSR 152          
The following BLAST results are available for this feature:
BLAST of CN186059 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 254
Match NameE-valueIdentityDescription
UBC2_USTMA4.709e-2544.55Ubiquitin-conjugating enzyme E2 2 OS=Ustilago mayd... [more]
UBC2_NECHA6.150e-2540.00Ubiquitin-conjugating enzyme E2 2 OS=Nectria haema... [more]
UBC2_NEUCR8.032e-2540.00Ubiquitin-conjugating enzyme E2 2 OS=Neurospora cr... [more]
UBC2_KLULA8.032e-2540.98Ubiquitin-conjugating enzyme E2 2 OS=Kluyveromyces... [more]
UBC2_DICDI8.032e-2542.11Ubiquitin-conjugating enzyme E2 2 OS=Dictyostelium... [more]
UBC2_DEBHA8.032e-2540.32Ubiquitin-conjugating enzyme E2 2 OS=Debaryomyces ... [more]
UBC16_SCHPO1.049e-2444.09Ubiquitin-conjugating enzyme E2 16 OS=Schizosaccha... [more]
UE2NL_HUMAN1.370e-2450.00Putative ubiquitin-conjugating enzyme E2 N-like OS... [more]
UBC1_CAEEL1.370e-2441.32Ubiquitin-conjugating enzyme E2 1 OS=Caenorhabditi... [more]
UBE2C_DICDI1.789e-2441.67Probable ubiquitin-conjugating enzyme E2 C OS=Dict... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002E21_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002E21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186059 ID=CN186059; Name=CN186059; organism=Citrus sinensis; type=EST; length=711bp
TTTTTTTTTTTTTTTTTAGGACAATAAACTACATTGAATGACCGTAGTTT
CAAACAAGAAACATTCAACATTAACAAAAACGTCTTGGCCTTGCAACTCC
TCCCCAAACATCCTTCCTCATTACTAAAATACAAAACATCCCCTTCCCGA
AGCAAGATTGAAGAAAAAGGAGAAAAAAACACAACATATTTCATATGAAT
GAGTTCCATTTCTGCAATATCCAAACAACTATCCCATGGCATACTTCTGT
GTCCAGCTCCTGGCAGTGGCTTCATATTTGGCCTTGTCGGACTTGTACAT
GTGAGCAATCTCCGGTACAAGCGGGTCGTCAGGATTTGGGTCAGTAAGCA
ACGAGCAGATAGAAAGCAGGACCTTTGAAATGGTAAGAGCTGGGCTCCAC
TGTTCTTTAAGGATATCAAGACATATGCTTCCATTGCTGTTGATGTTTGG
GTGGAAAACCTTGGTCCTAAAAGCAACCTTTGGGGGCTTGAAGGGATAAT
CCGGAGGAAAATGAATGGTAACCAAAAATACACCTCCTGCATATGGACTA
TCAGGGGGGCCCATAATTGTTGCTTGCCAGTGGAACATGTCTTCAGCCAC
CGGACCTTGTGCGGCGAAAAAGGAGATCGGAGGGCAATAGCAGTGAGAAA
GGGGAACGGCTTCGGAGCAGATCTGCGGCAGCTACTGGCCGTCCCGACCT
CTCTCCTCCCT
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