CN186057 | Citrus Genome Database

Overview


Name	CN186057
Unique Name	CN186057
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	791

Libraries


Library Name	Type
Washington Navel Orange Stored Fruit Pulp cDNA Library	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig760	contig	Csv1_Contig760:806..1597.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of CN186057 vs. ExPASy Swiss-Prot
Match: DNJB4_PONAB (DnaJ homolog subfamily B member 4 OS=Pongo abelii GN=DNAJB4 PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 4.043e-23
Identity = 55/132 (41.67%), Postives = 77/132 (58.33%), Query Frame = -2

Query:  395 KGMQNGQKITFPGEADEAPDTVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRPFMRGKLYIHFTVDFPESLSPDQCKMLETVLP 790
            KG + G KITFP E DE P+++  DIVF+++ K+HPKFKR G ++     +SL EALCG    +  LDGR   I     ++VKP   + I   G+P  + P  RG L I F V FP+++S    ++L   LP
Sbjct:  206 KGWKEGTKITFPREGDETPNSIPADIVFIIKDKDHPKFKRDGSNIIYTAKISLREALCGCSINVPTLDGRN--IPMSVNDIVKPGMRRRIIGYGLPFPKNPDQRGDLLIEFEVSFPDTISSSSKEVLRKHLP 335

[Close]

BLAST of CN186057 vs. ExPASy Swiss-Prot
Match: DNJB4_HUMAN (DnaJ homolog subfamily B member 4 OS=Homo sapiens GN=DNAJB4 PE=1 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 4.043e-23
Identity = 55/132 (41.67%), Postives = 77/132 (58.33%), Query Frame = -2

Query:  395 KGMQNGQKITFPGEADEAPDTVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRPFMRGKLYIHFTVDFPESLSPDQCKMLETVLP 790
            KG + G KITFP E DE P+++  DIVF+++ K+HPKFKR G ++     +SL EALCG    +  LDGR   I     ++VKP   + I   G+P  + P  RG L I F V FP+++S    ++L   LP
Sbjct:  206 KGWKEGTKITFPREGDETPNSIPADIVFIIKDKDHPKFKRDGSNIIYTAKISLREALCGCSINVPTLDGRN--IPMSVNDIVKPGMRRRIIGYGLPFPKNPDQRGDLLIEFEVSFPDTISSSSKEVLRKHLP 335

[Close]

BLAST of CN186057 vs. ExPASy Swiss-Prot
Match: DNJB4_MOUSE (DnaJ homolog subfamily B member 4 OS=Mus musculus GN=Dnajb4 PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.007e-22
Identity = 55/132 (41.67%), Postives = 77/132 (58.33%), Query Frame = -2

Query:  395 KGMQNGQKITFPGEADEAPDTVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRPFMRGKLYIHFTVDFPESLSPDQCKMLETVLP 790
            KG + G KITFP E DE P+++  DIVFV++ KEHPKFKR G ++     +SL EALCG    +  +DGR L +     ++VKP   + +   G+P  + P  RG L I F V FP+ +S    ++L   LP
Sbjct:  206 KGWKEGTKITFPREGDETPNSIPADIVFVIKDKEHPKFKRDGSNIVYTAKISLREALCGCSLNVPTMDGRNLPMSVT--DIVKPGMRRRVIGYGLPFPKNPDQRGDLLIEFDVSFPDVISAASKEILRKHLP 335

[Close]

BLAST of CN186057 vs. ExPASy Swiss-Prot
Match: DNJB4_BOVIN (DnaJ homolog subfamily B member 4 OS=Bos taurus GN=DNAJB4 PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.007e-22
Identity = 55/132 (41.67%), Postives = 76/132 (57.58%), Query Frame = -2

Query:  395 KGMQNGQKITFPGEADEAPDTVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRPFMRGKLYIHFTVDFPESLSPDQCKMLETVLP 790
            KG + G KITFP E DE P ++  DIVFV++ K+HPKFKR G ++     +SL EALCG    +  +DGR   I     ++VKP   + I   G+P  + P  RG L I F V FP+++S    ++L   LP
Sbjct:  206 KGWKEGTKITFPREGDETPTSIPADIVFVIKDKDHPKFKRDGSNIIYTAKISLREALCGCSINVPTMDGR--TIPMTINDIVKPGMRRRIIGYGLPFPKNPDQRGDLLIEFEVSFPDTISSSSKEVLRKHLP 335

[Close]

BLAST of CN186057 vs. ExPASy Swiss-Prot
Match: DNJB5_MOUSE (DnaJ homolog subfamily B member 5 OS=Mus musculus GN=Dnajb5 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.898e-21
Identity = 54/132 (40.91%), Postives = 75/132 (56.82%), Query Frame = -2

Query:  395 KGMQNGQKITFPGEADEAPDTVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRPFMRGKLYIHFTVDFPESLSPDQCKMLETVLP 790
            +G + G KITFP E D  PD +  DIVFVL+ K H  F+R G ++     +SL EALCG    I  +DGR  +I     +V+KP   K +  EG+P  + P  RG L + F V FP+ L+P   ++L+  LP
Sbjct:  217 RGWKEGTKITFPKEGDATPDNIPADIVFVLKDKPHAHFRRDGTNVLYSALISLKEALCGCTVNIPTIDGR--VIPLPCNDVIKPGTVKRLRGEGLPFPKVPTQRGDLIVEFKVRFPDRLTPQTRQILKQHLP 346

[Close]

BLAST of CN186057 vs. ExPASy Swiss-Prot
Match: DNJB5_HUMAN (DnaJ homolog subfamily B member 5 OS=Homo sapiens GN=DNAJB5 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.898e-21
Identity = 54/132 (40.91%), Postives = 75/132 (56.82%), Query Frame = -2

Query:  395 KGMQNGQKITFPGEADEAPDTVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRPFMRGKLYIHFTVDFPESLSPDQCKMLETVLP 790
            +G + G KITFP E D  PD +  DIVFVL+ K H  F+R G ++     +SL EALCG    I  +DGR  +I     +V+KP   K +  EG+P  + P  RG L + F V FP+ L+P   ++L+  LP
Sbjct:  217 RGWKEGTKITFPKEGDATPDNIPADIVFVLKDKPHAHFRRDGTNVLYSALISLKEALCGCTVNIPTIDGR--VIPLPCNDVIKPGTVKRLRGEGLPFPKVPTQRGDLIVEFKVRFPDRLTPQTRQILKQHLP 346

[Close]

BLAST of CN186057 vs. ExPASy Swiss-Prot
Match: DNJB5_BOVIN (DnaJ homolog subfamily B member 5 OS=Bos taurus GN=DNAJB5 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.898e-21
Identity = 54/132 (40.91%), Postives = 75/132 (56.82%), Query Frame = -2

Query:  395 KGMQNGQKITFPGEADEAPDTVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRPFMRGKLYIHFTVDFPESLSPDQCKMLETVLP 790
            +G + G KITFP E D  PD +  DIVFVL+ K H  F+R G ++     +SL EALCG    I  +DGR  +I     +V+KP   K +  EG+P  + P  RG L + F V FP+ L+P   ++L+  LP
Sbjct:  217 RGWKEGTKITFPKEGDATPDNIPADIVFVLKDKPHAHFRRDGTNVLYSALISLKEALCGCTVNIPTIDGR--VIPLPCNDVIKPGTVKRLRGEGLPFPKVPTQRGDLIVEFKVRFPDRLTPQTRQILKQHLP 346

[Close]

BLAST of CN186057 vs. ExPASy Swiss-Prot
Match: DNJB1_HUMAN (DnaJ homolog subfamily B member 1 OS=Homo sapiens GN=DNAJB1 PE=1 SV=4)

HSP 1 Score: 99.7525 bits (247), Expect = 1.878e-20
Identity = 54/132 (40.91%), Postives = 75/132 (56.82%), Query Frame = -2

Query:  395 KGMQNGQKITFPGEADEAPDTVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRPFMRGKLYIHFTVDFPESLSPDQCKMLETVLP 790
            KG + G KITFP E D+  + +  DIVFVL+ K H  FKR G D+     +SL EALCG    +  LDGR + +  +  +V++P   + +  EG+P+ + P  RG L I F V FPE +      +LE VLP
Sbjct:  210 KGWKEGTKITFPKEGDQTSNNIPADIVFVLKDKPHNIFKRDGSDVIYPARISLREALCGCTVNVPTLDGRTIPVVFK--DVIRPGMRRKVPGEGLPLPKTPEKRGDLIIEFEVIFPERIPQTSRTVLEQVLP 339

[Close]

BLAST of CN186057 vs. ExPASy Swiss-Prot
Match: DNJB1_MOUSE (DnaJ homolog subfamily B member 1 OS=Mus musculus GN=Dnajb1 PE=2 SV=3)

HSP 1 Score: 98.5969 bits (244), Expect = 4.184e-20
Identity = 53/132 (40.15%), Postives = 75/132 (56.82%), Query Frame = -2

Query:  395 KGMQNGQKITFPGEADEAPDTVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRPFMRGKLYIHFTVDFPESLSPDQCKMLETVLP 790
            +G + G KITFP E D+  + +  DIVFVL+ K H  FKR G D+     +SL EALCG    +  LDGR + +  +  +V++P   + +  EG+P+ + P  RG L I F V FPE +      +LE VLP
Sbjct:  210 RGWKEGTKITFPKEGDQTSNNIPADIVFVLKDKPHNIFKRDGSDVIYPARISLREALCGCTVNVPTLDGRTIPVVFK--DVIRPGMRRKVPGEGLPLPKTPEKRGDLVIEFEVIFPERIPVSSRTILEQVLP 339

[Close]

BLAST of CN186057 vs. ExPASy Swiss-Prot
Match: DNJB1_BOVIN (DnaJ homolog subfamily B member 1 OS=Bos taurus GN=DNAJB1 PE=2 SV=3)

HSP 1 Score: 98.5969 bits (244), Expect = 4.184e-20
Identity = 53/132 (40.15%), Postives = 75/132 (56.82%), Query Frame = -2

Query:  395 KGMQNGQKITFPGEADEAPDTVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRPFMRGKLYIHFTVDFPESLSPDQCKMLETVLP 790
            +G + G KITFP E D+  + +  DIVFVL+ K H  FKR G D+     +SL EALCG    +  LDGR + +  +  +V++P   + +  EG+P+ + P  RG L I F V FPE +      +LE VLP
Sbjct:  210 RGWKEGTKITFPKEGDQTSNNIPADIVFVLKDKPHNIFKRDGSDVIYPARISLREALCGCTVNVPTLDGRTIPVVFK--DVIRPGMRRKVPGEGLPLPKTPEKRGDLIIEFEVIFPERIPQTSRTVLEQVLP 339

The following BLAST results are available for this feature:

BLAST of CN186057 vs. ExPASy Swiss-Prot

BLAST of CN186057 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 48


Match Name	E-value	Identity	Description
DNJB4_PONAB	4.043e-23	41.67	DnaJ homolog subfamily B member 4 OS=Pongo abelii ...	[more]
DNJB4_HUMAN	4.043e-23	41.67	DnaJ homolog subfamily B member 4 OS=Homo sapiens ...	[more]
DNJB4_MOUSE	2.007e-22	41.67	DnaJ homolog subfamily B member 4 OS=Mus musculus ...	[more]
DNJB4_BOVIN	2.007e-22	41.67	DnaJ homolog subfamily B member 4 OS=Bos taurus GN...	[more]
DNJB5_MOUSE	2.898e-21	40.91	DnaJ homolog subfamily B member 5 OS=Mus musculus ...	[more]
DNJB5_HUMAN	2.898e-21	40.91	DnaJ homolog subfamily B member 5 OS=Homo sapiens ...	[more]
DNJB5_BOVIN	2.898e-21	40.91	DnaJ homolog subfamily B member 5 OS=Bos taurus GN...	[more]
DNJB1_HUMAN	1.878e-20	40.91	DnaJ homolog subfamily B member 1 OS=Homo sapiens ...	[more]
DNJB1_MOUSE	4.184e-20	40.15	DnaJ homolog subfamily B member 1 OS=Mus musculus ...	[more]
DNJB1_BOVIN	4.184e-20	40.15	DnaJ homolog subfamily B member 1 OS=Bos taurus GN...	[more]

Pages

Properties


Property Name	Value
Genbank description	UCRCS05_0002E19_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002E19, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CN186057 ID=CN186057; Name=CN186057; organism=Citrus sinensis; type=EST; length=791bp
GCGGTAAACACTAAAAATATTAATTATGAGCATTGAGTCTGAAGGTGCAA
CGCTAGAATTCCATTACATAGTCAGTTATCAGAAAAACATAAGAATAAAG
ACAGACAAACCAAAACTAGAACCTCTAAAGCCTATAACAGAAAATAAATA
TGTTGAGAATCTTTTTCTCCCAAACAATGAAAATACTAAATCAGGCCACC
CCTTTTCTTCTACATCATCACTGCTGAGCACACTGCACTCTCTGGGCACC
ACCTTGCATATCGTCATCTTCATCGTATGCCTCCTGAGCTGCTTGTTGCT
TCCTTCGCATTTCCTCCTCAATGTTCACATCATGCAGGGTTGTTTCTTCA
CACTCATCCAGTTCCATATCGGTGAGCTGGACTGAGGTCCTTGGAGGTAG
TACGGTCTCCAGCATCTTGCACTGGTCTGGGCTCAGTGACTCAGGGAAGT
CAACAGTGAAATGAATGTACAGTTTGCCCCTCATAAATGGCCTCTGATAC
ATAGGCATTCCTTCATCATTTATGGCCTTGAATTGGTCCGGCTTGACTAC
TTCCCCAGGCTGGGATTTGATGAGGAGTTGCCGGCCATCCAAATGAGTTA
TTACAAATTGAAAGCCACAGAGAGCTTCTGTCAGTGACAGGGTGTGCTCA
ACAAATAGGTCATCACCCTTTCGCTTAAATTTCGGGTGCTCTTTCTGTTG
TAGAACAAATACAATGTCACCTGTGACAGTGTCGGGCGCTTCATCAGCTT
CTCCAGGGAACGTAATCTTCTGTCCATTTTGCATCCCCTTC