CN186056

Overview
NameCN186056
Unique NameCN186056
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length745
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9594 contig Csv1_Contig9594:462..1206. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN186056 vs. ExPASy Swiss-Prot
Match: ERG25_DANRE (C-4 methylsterol oxidase OS=Danio rerio GN=sc4mol PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 9.349e-27
Identity = 51/119 (42.86%), Postives = 73/119 (61.34%), Query Frame = -1
Query:  383 LYKHVHSVHHEYATPFGLTSEYAHPAEILFLGFATIVGPAITGPHLMTLWLWMVLRVLETVEAHCGYHFPWSLSNFIPLYGGADFHDYHHRLLYTKSGNYSSTFVYIAWIFGTDKGYRK 739
            +YK++H VHH++ +PFG+ +EYAHP E L LG    +G  +   H++ LW W+  R+LET++ H GY  P +  + IP Y GA FHD+HH       GNY STF +   +F TD  + K
Sbjct:  165 IYKYIHKVHHDFTSPFGMQAEYAHPLETLILGAGFFIGTMVFCNHMILLWAWVTFRLLETIDVHSGYDIPLNPLHLIPFYAGARFHDFHHMNFV---GNYGSTFTWWDRLFDTDSQFNK 280          
BLAST of CN186056 vs. ExPASy Swiss-Prot
Match: ERG25_YEAST (C-4 methylsterol oxidase OS=Saccharomyces cerevisiae GN=ERG25 PE=1 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.221e-26
Identity = 56/120 (46.67%), Postives = 77/120 (64.17%), Query Frame = -1
Query:  392 YKHVHSVHHEYATPFGLTSEYAHPAEILFLGFATIVGPAI----TGP-HLMTLWLWMVLRVLETVEAHCGYHFPWSLSNFIPLYGGADFHDYHHRLLYTKSGNYSSTFVYIAWIFGTDKG 736
            YK++H  HH YA PFGL++EYAHPAE L LGF T+  P +    TG  HL TL +W+ LR+ + V++H GY FPWSL+  +P + GA+ HD HH       GNY+S+F +  +   T+ G
Sbjct:  169 YKYIHKQHHRYAAPFGLSAEYAHPAETLSLGFGTVGMPILYVMYTGKLHLFTLCVWITLRLFQAVDSHSGYDFPWSLNKIMPFWAGAEHHDLHHHYFI---GNYASSFRWWDYCLDTESG 285          
BLAST of CN186056 vs. ExPASy Swiss-Prot
Match: ERG25_PIG (C-4 methylsterol oxidase OS=Sus scrofa GN=SC4MOL PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.083e-26
Identity = 51/119 (42.86%), Postives = 74/119 (62.18%), Query Frame = -1
Query:  389 KWLYKHVHSVHHEYATPFGLTSEYAHPAEILFLGFATIVGPAITGPHLMTLWLWMVLRVLETVEAHCGYHFPWSLSNFIPLYGGADFHDYHHRLLYTKSGNYSSTFVYIAWIFGTDKGY 745
            K +YK++H +HHE+  PFG+ +EYAHP E L LG    +G  +   H++ LW W+ +R++ET++ H GY  P +  + IP Y G+  HD+HH       GNY+STF +   IFGTD  Y
Sbjct:  163 KRIYKYIHKIHHEFQAPFGMEAEYAHPLETLILGTGFFIGIMLLCDHVILLWAWVTVRLIETIDVHSGYDIPLNPLHLIPFYAGSRHHDFHHMNFI---GNYASTFTWWDRIFGTDAQY 278          
BLAST of CN186056 vs. ExPASy Swiss-Prot
Match: C2512_DANRE (Cholesterol 25-hydroxylase-like protein 1, member 2 OS=Danio rerio GN=ch25hl1.2 PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.545e-21
Identity = 49/122 (40.16%), Postives = 72/122 (59.02%), Query Frame = -1
Query:  386 KWLYKHVHSVHHEYATPFGLTSEYAHPAEILFLGFATIVGPAITGPHLMTLWLWMVLRVLETVEAHCGYHFPWSLSNFIP--LYGGADFHDYHHRLLYTKSGNYSSTFVYIAWIFGTDKGYR 745
            +WLY   H++HH Y+ PF L ++     E++ +GF T + P +   HL+T W++MV+ V  +VE HCGY FPWS S  IP  +YGG   HD HH+   T   N++  F +   +FGT   +R
Sbjct:  152 RWLYVTFHAIHHNYSAPFALATQCLGGWELVTVGFWTTLNPVLLRCHLLTTWMFMVVHVYVSVEDHCGYDFPWSTSRLIPFGVYGGPSKHDVHHQKPNT---NFAPHFSHWDKMFGTHADFR 270          
BLAST of CN186056 vs. ExPASy Swiss-Prot
Match: CH25H_DANRE (Cholesterol 25-hydroxylase-like protein OS=Danio rerio GN=ch25h PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 6.489e-20
Identity = 49/116 (42.24%), Postives = 65/116 (56.03%), Query Frame = -1
Query:  401 WLYKHVHSVHHEYATPFGLTSEYAHPAEILFLGFATIVGPAITGPHLMTLWLWMVLRVLETVEAHCGYHFPWSLSNFIP--LYGGADFHDYHHRLLYTKSGNYSSTFVYIAWIFGT 742
            WLY+  H VHH+Y + F L +EY+   E L LGF   V P + G H MT  L+ +L +  +VE HCGY  PW+    +P  LYGGA  HD HH+       NY+  F +   +FGT
Sbjct:  135 WLYRTFHKVHHKYTSTFALATEYSGAWETLSLGFFAAVNPMLLGVHPMTEMLFHMLNMWLSVEDHCGYDLPWATHRLMPFGLYGGAPHHDVHHQKF---KSNYAPYFTHWDKLFGT 247          
BLAST of CN186056 vs. ExPASy Swiss-Prot
Match: C25HL_CAEEL (Cholesterol 25-hydroxylase-like protein OS=Caenorhabditis elegans GN=F35C8.5 PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 6.074e-18
Identity = 47/135 (34.81%), Postives = 67/135 (49.63%), Query Frame = -1
Query:  356 KWLYKHVHSVHHEYATPFGLTSEYAHPAEILFLGFATIVGPAITGPHLMTLWLWMVLRVLETVEAHCGYHFPWSLSNFIPLYGGADFHDYHHRLLYTKSGNYSSTFVYIAWIFGTDKGYRKLKAL-----KSFGI 745
            KWLY+  HSVHH Y++PF  ++++ HP E+ F+G      P I   H +T W+W  +    + E H GY FP++L      Y GA  HD HH    T    +   F Y+  + G    Y  LK +     K FG+
Sbjct:  156 KWLYRWCHSVHHMYSSPFAASAQHLHPFELFFVGTFITTIPWIFPTHCLTYWIWFFIAQSVSYEVHIGYDFPFALHRIFWFYSGAPAHDMHHLRPLT---CFQPWFNYLDRLMGYHITYADLKKMTEAKFKKFGL 287          
BLAST of CN186056 vs. ExPASy Swiss-Prot
Match: C25HL_CAEBR (Cholesterol 25-hydroxylase-like protein OS=Caenorhabditis briggsae GN=CBG14675 PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.353e-17
Identity = 47/135 (34.81%), Postives = 66/135 (48.89%), Query Frame = -1
Query:  356 KWLYKHVHSVHHEYATPFGLTSEYAHPAEILFLGFATIVGPAITGPHLMTLWLWMVLRVLETVEAHCGYHFPWSLSNFIPLYGGADFHDYHHRLLYTKSGNYSSTFVYIAWIFGTDKGYRKLKAL-----KSFGI 745
            KWLY+  HSVHH Y++PF  ++++ HP E+ F+       P I   H +T WLW  +    + E H GY FP++L      Y GA  HD HH    T    +   F Y+  + G    Y  LK +     K FG+
Sbjct:  156 KWLYRWCHSVHHMYSSPFAASAQHLHPFELFFVATFITTVPWIFPTHCLTYWLWFFVAQSVSYEVHIGYDFPFALHRIFWFYSGAPAHDMHHLRPLT---CFQPWFNYLDRLMGYHITYEDLKKMTEAKFKKFGL 287          
BLAST of CN186056 vs. ExPASy Swiss-Prot
Match: CE004_MACFA (Uncharacterized protein C5orf4 homolog OS=Macaca fascicularis GN=QccE-20373 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.552e-16
Identity = 50/146 (34.25%), Postives = 71/146 (48.63%), Query Frame = -1
Query:  335 YKHVHSVHHEYATPFGLTSEYAHPAE-ILFLGFATIVGPAITGPHLMTLWLWMVLRVLETVEAHCGYHFPWSLSNFIPLYGGADFHDYHHRLLYTKSGNYSSTFVYIAWIFGTDKGYRKLKALK-----------SFGIEDDPKQM 736
            YK +H  HHE+  P G+ S YAHP E ++      IVGP + G HL ++ +W  L ++ T  +HCGYH P     F+P     +FHDYHH     K          +  + GTD  +++ KA +           S  I D PK+M
Sbjct:  199 YKKIHKKHHEWTAPIGVISLYAHPIEHVVSNMLPAIVGPLVMGSHLSSITMWFSLALIITTISHCGYHLP-----FLP---SPEFHDYHH----LKFNQCYGVLGVLDHLHGTDTMFKQTKAYEKHVLLLGFTPLSESIPDSPKRM 332          
BLAST of CN186056 vs. ExPASy Swiss-Prot
Match: CE004_HUMAN (Uncharacterized protein C5orf4 OS=Homo sapiens GN=C5orf4 PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.685e-16
Identity = 50/146 (34.25%), Postives = 69/146 (47.26%), Query Frame = -1
Query:  335 YKHVHSVHHEYATPFGLTSEYAHPAEILFLGFA-TIVGPAITGPHLMTLWLWMVLRVLETVEAHCGYHFPWSLSNFIPLYGGADFHDYHHRLLYTKSGNYSSTFVYIAWIFGTDKGYRKLKALK-----------SFGIEDDPKQM 736
            YK +H  HHE+  P G+ S YAHP E         IVGP + G HL ++ +W  L ++ T  +HCGYH P     F+P     +FHDYHH     K          +  + GTD  +++ KA +           S  I D PK+M
Sbjct:  199 YKKIHKKHHEWTAPIGVISLYAHPIEHAVSNMLPVIVGPLVMGSHLSSITMWFSLALIITTISHCGYHLP-----FLP---SPEFHDYHH----LKFNQCYGVLGVLDHLHGTDTMFKQTKAYERHVLLLGFTPLSESIPDSPKRM 332          
BLAST of CN186056 vs. ExPASy Swiss-Prot
Match: C2511_DANRE (Cholesterol 25-hydroxylase-like protein 1, member 1 OS=Danio rerio GN=ch25hl1.1 PE=2 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 1.072e-14
Identity = 40/115 (34.78%), Postives = 66/115 (57.39%), Query Frame = -1
Query:  401 LYKHVHSVHHEYATPFGLTSEYAHPAEILFLGFATIVGPAITGPHLMTLWLWMVLRVLETVEAHCGYHFPWSLSNFIP--LYGGADFHDYHHRLLYTKSGNYSSTFVYIAWIFGT 739
            LY+ VH++HH+Y +PF  ++++    E++ +GF + + P +   H +T+W   V  +  +VE H GY  P+S  + +P  L GGA  HD HH+     S N++  F +   IFGT
Sbjct:  154 LYRWVHAIHHDYISPFSWSTQHLSGVELMTVGFWSNIDPILLKCHPLTVWTLTVYSIWMSVEDHIGYDLPFSPGHLVPFGLLGGAMAHDMHHQ---KPSSNFAPFFSHWDKIFGT 265          
The following BLAST results are available for this feature:
BLAST of CN186056 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
ERG25_DANRE9.349e-2742.86C-4 methylsterol oxidase OS=Danio rerio GN=sc4mol ... [more]
ERG25_YEAST1.221e-2646.67C-4 methylsterol oxidase OS=Saccharomyces cerevisi... [more]
ERG25_PIG2.083e-2642.86C-4 methylsterol oxidase OS=Sus scrofa GN=SC4MOL P... [more]
C2512_DANRE1.545e-2140.16Cholesterol 25-hydroxylase-like protein 1, member ... [more]
CH25H_DANRE6.489e-2042.24Cholesterol 25-hydroxylase-like protein OS=Danio r... [more]
C25HL_CAEEL6.074e-1834.81Cholesterol 25-hydroxylase-like protein OS=Caenorh... [more]
C25HL_CAEBR1.353e-1734.81Cholesterol 25-hydroxylase-like protein OS=Caenorh... [more]
CE004_MACFA2.552e-1634.25Uncharacterized protein C5orf4 homolog OS=Macaca f... [more]
CE004_HUMAN5.685e-1634.25Uncharacterized protein C5orf4 OS=Homo sapiens GN=... [more]
C2511_DANRE1.072e-1434.78Cholesterol 25-hydroxylase-like protein 1, member ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0002E19_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002E19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186056 ID=CN186056; Name=CN186056; organism=Citrus sinensis; type=EST; length=745bp
TTTTTTTTTTTTTTTTTGAGTTCCGGCNTTAAAATCATTAAGAAATCATG
GGAGTTTAAAAGGATCTACAGCATAACCCCATTTGTTGAAATATAGCACA
GGAATTTCACACTAACGCAAGAAACAAGAAGGTATTAAAAAAATATATCC
AAAGAAATCTTTCCGATGATTACAGATTACTACAAGCTGTAAACATTAAC
AGCAAGAAACAACTAAAAGGTGGTTTCACACAAGATGAGGCAGGGACAGA
CAAAACCTTTTCCAAGAAGCCCTTTAGCCAGGAACCCGATTTTCTAATTT
TGAATCTAACCAAAAAAAGAATTTTCTACCGTTACATCTGCTTGGGGTCA
TCTTCAATTCCAAAACTCTTTAGTGCTTTCAGCTTTCTGTAACCCTTATC
AGTACCAAATATCCAGGCGATGTAAACAAAAGTCGATGAATAATTGCCAG
ATTTGGTATAGAGCAAACGATGATGATAGTCATGAAAATCAGCACCCCCA
TACAAAGGTATAAAGTTTGAGAGGCTCCATGGGAAATGGTAACCACAATG
TGCCTCAACAGTCTCCAATACTCTGAGCACCATCCACAACCAGAGAGTCA
TCAAATGGGGCCCAGTGATGGCAGGACCGACAATGGTAGCAAAGCCAAGG
AACAGTATTTCAGCAGGGTGAGCATATTCAGATGTGAGCCCAAATGGTGT
TGCATATTCATGATGGACACTGTGAACGTGTTTGTACAACCATTT
back to top