CN186056

Overview
NameCN186056
Unique NameCN186056
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length745
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9594 contig Csv1_Contig9594:462..1206. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN186056 vs. ExPASy Swiss-Prot
Match: CH25H_HUMAN (Cholesterol 25-hydroxylase OS=Homo sapiens GN=CH25H PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.119e-14
Identity = 40/116 (34.48%), Postives = 61/116 (52.59%), Query Frame = -1
Query:  401 WLYKHVHSVHHEYATPFGLTSEYAHPAEILFLGFATIVGPAITGPHLMTLWLWMVLRVLETVEAHCGYHFPWSLSNFIPL--YGGADFHDYHHRLLYTKSGNYSSTFVYIAWIFGT 742
            WLY+  H VHH+ ++ F L ++Y    E+  LGF  ++   + G H +T   + V+ +  +VE H GY+FPWS    +P   YGG   HD HH      + N++  F +   I GT
Sbjct:  151 WLYRTFHKVHHQNSSSFALATQYMSVWELFSLGFFDMMNVTLLGCHPLTTLTFHVVNIWLSVEDHSGYNFPWSTHRLVPFGWYGGVVHHDLHHSHF---NCNFAPYFTHWDKILGT 263          
BLAST of CN186056 vs. ExPASy Swiss-Prot
Match: CH25H_PIG (Cholesterol 25-hydroxylase OS=Sus scrofa GN=CH25H PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.949e-14
Identity = 39/116 (33.62%), Postives = 61/116 (52.59%), Query Frame = -1
Query:  401 WLYKHVHSVHHEYATPFGLTSEYAHPAEILFLGFATIVGPAITGPHLMTLWLWMVLRVLETVEAHCGYHFPWSLSNFIPL--YGGADFHDYHHRLLYTKSGNYSSTFVYIAWIFGT 742
            WLY+  H +HH+ ++ F L ++Y    E+L LG   +V   +   H +T+ ++ V+ +  +VE H GY FPWS    +P   YGG   HD HH      + N++  F +   I GT
Sbjct:  151 WLYRTFHKMHHQNSSSFALATQYMSVGELLSLGVFDMVNIMLLRCHPLTVLIFHVINIWLSVEDHSGYDFPWSAHRLVPFGWYGGVTHHDLHHSQF---NCNFAPYFTHWDKILGT 263          
BLAST of CN186056 vs. ExPASy Swiss-Prot
Match: CH25H_MOUSE (Cholesterol 25-hydroxylase OS=Mus musculus GN=Ch25h PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.949e-14
Identity = 35/93 (37.63%), Postives = 53/93 (56.99%), Query Frame = -1
Query:  470 WLYKHVHSVHHEYATPFGLTSEYAHPAEILFLGFATIVGPAITGPHLMTLWLWMVLRVLETVEAHCGYHFPWSLSNFIPL--YGGADFHDYHH 742
            WLY+  H VHH+ ++ F L ++Y    E+L L F  ++  A+   H +T++ + V+ +  +VE H GY FPWS    +P   YGG   HD HH
Sbjct:  151 WLYRTFHKVHHQNSSSFALATQYMSFWELLSLTFFDVLNVAVLRCHPLTIFTFHVINIWLSVEDHSGYDFPWSTHRLVPFGWYGGVAHHDMHH 243          
BLAST of CN186056 vs. ExPASy Swiss-Prot
Match: CH25H_RAT (Cholesterol 25-hydroxylase OS=Rattus norvegicus GN=Ch25h PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.185e-13
Identity = 35/93 (37.63%), Postives = 53/93 (56.99%), Query Frame = -1
Query:  470 WLYKHVHSVHHEYATPFGLTSEYAHPAEILFLGFATIVGPAITGPHLMTLWLWMVLRVLETVEAHCGYHFPWSLSNFIPL--YGGADFHDYHH 742
            WLY+  H VHH+ ++ F L ++Y    E+L L F  ++  A+   H +T+ ++ V+ +  +VE H GY FPWS    +P   YGG   HD HH
Sbjct:  151 WLYRTFHKVHHQNSSSFALATQYMSVWELLSLTFFDVLNVAMLQCHPLTILVFHVVNIWLSVEDHSGYDFPWSTHRLVPFGWYGGVAHHDLHH 243          
The following BLAST results are available for this feature:
BLAST of CN186056 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
CH25H_HUMAN3.119e-1434.48Cholesterol 25-hydroxylase OS=Homo sapiens GN=CH25... [more]
CH25H_PIG6.949e-1433.62Cholesterol 25-hydroxylase OS=Sus scrofa GN=CH25H ... [more]
CH25H_MOUSE6.949e-1437.63Cholesterol 25-hydroxylase OS=Mus musculus GN=Ch25... [more]
CH25H_RAT1.185e-1337.63Cholesterol 25-hydroxylase OS=Rattus norvegicus GN... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002E19_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002E19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186056 ID=CN186056; Name=CN186056; organism=Citrus sinensis; type=EST; length=745bp
TTTTTTTTTTTTTTTTTGAGTTCCGGCNTTAAAATCATTAAGAAATCATG
GGAGTTTAAAAGGATCTACAGCATAACCCCATTTGTTGAAATATAGCACA
GGAATTTCACACTAACGCAAGAAACAAGAAGGTATTAAAAAAATATATCC
AAAGAAATCTTTCCGATGATTACAGATTACTACAAGCTGTAAACATTAAC
AGCAAGAAACAACTAAAAGGTGGTTTCACACAAGATGAGGCAGGGACAGA
CAAAACCTTTTCCAAGAAGCCCTTTAGCCAGGAACCCGATTTTCTAATTT
TGAATCTAACCAAAAAAAGAATTTTCTACCGTTACATCTGCTTGGGGTCA
TCTTCAATTCCAAAACTCTTTAGTGCTTTCAGCTTTCTGTAACCCTTATC
AGTACCAAATATCCAGGCGATGTAAACAAAAGTCGATGAATAATTGCCAG
ATTTGGTATAGAGCAAACGATGATGATAGTCATGAAAATCAGCACCCCCA
TACAAAGGTATAAAGTTTGAGAGGCTCCATGGGAAATGGTAACCACAATG
TGCCTCAACAGTCTCCAATACTCTGAGCACCATCCACAACCAGAGAGTCA
TCAAATGGGGCCCAGTGATGGCAGGACCGACAATGGTAGCAAAGCCAAGG
AACAGTATTTCAGCAGGGTGAGCATATTCAGATGTGAGCCCAAATGGTGT
TGCATATTCATGATGGACACTGTGAACGTGTTTGTACAACCATTT
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