DC900143

Overview
NameDC900143
Unique NameDC900143
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1193
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC900143 vs. ExPASy Swiss-Prot
Match: LIS1_DICDI (Lissencephaly-1 homolog OS=Dictyostelium discoideum GN=lis1 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 5.363e-13
Identity = 71/297 (23.91%), Postives = 116/297 (39.06%), Query Frame = 1
Query:   91 GNMLFTTHKDCKIRIWNXTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSVKIWRRV-------YRENSHTLTMTLKFQQSSVNALALSSFFDNY------------------FLYSGSSDGSINFWEKDK---MSGGFNHGGFLQGHCFAVLCLVAIEKLIFSGSEDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVK 897
            GN+L +   D  I++W+                    F ++    T   H   VSC+ F  +   L + S DKT+K W      C  + + V HE  V  I V++D   + +CS+D ++K W  V       YRE+SH +   L F  +++  +  S                        +L +GS D +I  WE      ++    H  +++   F         K + S  +D TIRVW  A+G C      + + H   + CL   L    +  G       +D   KVW+++
Sbjct:  160 GNLLASCSADLTIKLWD--------------------FQTYDCVKTLHGHDHNVSCVRFTPSGDQLISSSRDKTIKVWEAATGYC--IKTLVGHEDWVRKITVSEDGSCIASCSNDQTIKTWNIVKGECLATYREHSHVVE-CLAFSTANIIDIPGSLLSTPEGKSKVKQGPGGNLVGQCGYLATGSRDKTIKIWELATGRCLATYIGHDNWVRAVRFH-----PCGKFLLSVGDDKTIRVWDIAQGRCIK---TINEAHTHFISCLDFCLHNPHIATG------GVDDVIKVWKLQ 419          
BLAST of DC900143 vs. ExPASy Swiss-Prot
Match: LIS1_BOVIN (Platelet-activating factor acetylhydrolase IB subunit alpha OS=Bos taurus GN=PAFAH1B1 PE=1 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 5.363e-13
Identity = 78/331 (23.56%), Postives = 131/331 (39.58%), Query Frame = 1
Query:   37 ERGFIKARHGEVRAILAHG--NMLFTTHKDCKIRIWNXTVSDNFRTKKVTT----------------------LPRRSSFLSFSKSNTQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSVKIW-------RRVYRENSHTLTMTLKFQQSSVNALALSSFFDNY-------FLYSGSSDGSINFWEKDKMSGGF------NHGGFLQGHCFAVLCLVAIEKLIFSGSEDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVK 897
            E+  +      V  ++ H   +++ +  +D  I++W+    D  RT K  T                        +   F  F    T   H   VS +A       + + S DKT+K W V  +   CV +F  H   V  +  NQD   + +CS+D +V++W       +   RE+ H +       +SS ++++ ++  +         FL SGS D +I  W+   +S G        H  +++G  F      +  K I S ++D T+RVW          C+  L+ H         SL+  K      V + S+DQT KVW  +
Sbjct:  100 EKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVEDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIKMWEV--QTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHEHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWD---VSTGMCLMTLVGHDNWVRGVLFH-----SGGKFILSCADDKTLRVWDYKN----KRCMKTLNAHEH----FVTSLDFHKTAP--YVVTGSVDQTVKVWECR 410          
BLAST of DC900143 vs. ExPASy Swiss-Prot
Match: LIS1_DROME (Lissencephaly-1 homolog OS=Drosophila melanogaster GN=Lis-1 PE=1 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 9.149e-13
Identity = 77/319 (24.14%), Postives = 127/319 (39.81%), Query Frame = 1
Query:    7 IRVWRQPDCVERGFIKARHGEVRAIL--AHGNMLFTTHKDCKIRIWNXTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSVKIW-------RRVYRENSHTLTMTLKFQQSSVNALALSSFFDNY-------FLYSGSSDGSINFWEKD------KMSGGFNHGGFLQGHCFAVLCLVAIEKLIFSGSEDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVK 897
            IR+W          +K     V+ +   A G +L +   D  I++W+   S                   +    T   H   VS +AF  A   + + S D+T+K W V    C  V ++  H   V  + V+ +     TCS+D ++++W       +   R++ HT+       +++ +A+  ++  DN        FL SGS D +I  W+         +SG   H  +++G     L      K + S S+D TIRVW          C+  L  H+        S++  K      V S S+DQT KVW  +
Sbjct:  132 IRIWDFETGEYERSLKGHTDSVQDVAFDAQGKLLASCSADLSIKLWDFQQS-------------------YECIKTMHGHDHNVSSVAFVPAGDYVLSASRDRTIKMWEVATGYC--VKTYTGHREWVRMVRVHIEGSIFATCSNDQTIRVWLTNSKDCKVELRDHEHTVECIAWAPEAAASAINEAAGADNKKGHHQGPFLASGSRDKTIRIWDVSVGLCLLTLSG---HDNWVRG-----LAFHPGGKYLVSASDDKTIRVWDLRN----KRCMKTLYAHQH----FCTSIDFHKAHP--YVISGSVDQTVKVWECR 411          
BLAST of DC900143 vs. ExPASy Swiss-Prot
Match: LIS1_CHICK (Platelet-activating factor acetylhydrolase IB subunit alpha OS=Gallus gallus GN=PAFAH1B1 PE=2 SV=3)

HSP 1 Score: 75.0998 bits (183), Expect = 9.149e-13
Identity = 78/331 (23.56%), Postives = 130/331 (39.27%), Query Frame = 1
Query:   37 ERGFIKARHGEVRAILAHG--NMLFTTHKDCKIRIWNXTVSDNFRTKKVTTLPRRS----------------------SFLSFSKSNTQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSVKIW-------RRVYRENSHTLTMTLKFQQSSVNALALSSFFDNY-------FLYSGSSDGSINFWEKDKMSGGF------NHGGFLQGHCFAVLCLVAIEKLIFSGSEDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVK 897
            E+  +      V  ++ H   +++ +  +D  I++W+    D  RT K  T   +                        F  F    T   H   VS +A       + + S DKT+K W V  +   CV +F  H   V  +  NQD   + +CS+D +V++W       +   RE+ H +       +SS + ++ ++  +         FL SGS D +I  W+   +S G        H  +++G  F      +  K I S ++D T+RVW          C+  L+ H         SL+  K      V + S+DQT KVW  +
Sbjct:  100 EKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHTGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIKMWEV--QTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHEHVVECISWAPESSYSTISEATGSETKKSGKPGPFLLSGSRDKTIKMWD---ISTGMCLMTLVGHDNWVRGVLFH-----SGGKFILSCADDKTLRVWDFKN----KRCMKTLNAHEH----FVTSLDFHKTAP--YVVTGSVDQTVKVWECR 410          
BLAST of DC900143 vs. ExPASy Swiss-Prot
Match: LIS1_XENTR (Lissencephaly-1 homolog OS=Xenopus tropicalis GN=pafah1b1 PE=2 SV=3)

HSP 1 Score: 74.7146 bits (182), Expect = 1.195e-12
Identity = 79/331 (23.87%), Postives = 129/331 (38.97%), Query Frame = 1
Query:   37 ERGFIKARHGEVRAILAHG--NMLFTTHKDCKIRIWNXTVSDNFRTKKVTTLPRRS----------------------SFLSFSKSNTQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSVKIW-------RRVYRENSHTLTMTLKFQQSSVNALALSSFFDNY-------FLYSGSSDGSINFWEKDKMSGGF------NHGGFLQGHCFAVLCLVAIEKLIFSGSEDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVK 897
            E+  +      V  ++ H   +++ T  +D  I++W+    D  RT K  T   +                        F  F    T   H   VS +A       + + S DKT+K W V  +   CV +F  H   V  +  NQD   + +CS+D +V++W       +   RE+ H +       +SS + ++ ++  +         FL SGS D +I  W+   +S G        H  +++G  F         K I S ++D TIR+W          C+  L+ H         SL+  K      V + S+DQT KVW  +
Sbjct:  100 EKYALSGHRSPVTRVIFHPVFSVMVTASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIKMWEV--QTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHEHVVECISWAPESSYSTISDATGSETKKSGKPGPFLLSGSRDKTIKMWD---ISIGMCLMTLVGHDNWVRGVQFH-----PGGKFILSCADDKTIRIWDYKN----KRCMKTLNAHEH----FVTSLDFHKTAP--YVVTGSVDQTVKVWECR 410          
BLAST of DC900143 vs. ExPASy Swiss-Prot
Match: LIS1_PIG (Platelet-activating factor acetylhydrolase IB subunit alpha OS=Sus scrofa GN=PAFAH1B1 PE=2 SV=3)

HSP 1 Score: 74.7146 bits (182), Expect = 1.195e-12
Identity = 77/331 (23.26%), Postives = 131/331 (39.58%), Query Frame = 1
Query:   37 ERGFIKARHGEVRAILAHG--NMLFTTHKDCKIRIWNXTVSDNFRTKKVTTLPRRS----------------------SFLSFSKSNTQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSVKIW-------RRVYRENSHTLTMTLKFQQSSVNALALSSFFDNY-------FLYSGSSDGSINFWEKDKMSGGF------NHGGFLQGHCFAVLCLVAIEKLIFSGSEDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVK 897
            E+  +      V  ++ H   +++ +  +D  I++W+    D  RT K  T   +                        F  F    T   H   VS +A       + + + DKT+K W V  +   CV +F  H   V  +  NQD   + +CS+D +V++W       +   RE+ H +       +SS ++++ ++  +         FL SGS D +I  W+   +S G        H  +++G  F      +  K I S ++D T+RVW          C+  L+ H         SL+  K      V + S+DQT KVW  +
Sbjct:  100 EKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNGDHIVSAARDKTIKMWEV--QTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHEHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWD---VSTGMCLMTLVGHDNWVRGVLFH-----SGGKFILSCADDKTLRVWDYKN----KRCMKTLNAHEH----FVTSLDFHKTAP--YVVTGSVDQTVKVWECR 410          
BLAST of DC900143 vs. ExPASy Swiss-Prot
Match: LIS1B_XENLA (Lissencephaly-1 homolog B OS=Xenopus laevis GN=pafah1b1-B PE=2 SV=3)

HSP 1 Score: 74.7146 bits (182), Expect = 1.195e-12
Identity = 79/331 (23.87%), Postives = 129/331 (38.97%), Query Frame = 1
Query:   37 ERGFIKARHGEVRAILAHG--NMLFTTHKDCKIRIWNXTVSDNFRTKKVTTLPRRS----------------------SFLSFSKSNTQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSVKIW-------RRVYRENSHTLTMTLKFQQSSVNALALSSFFDNY-------FLYSGSSDGSINFWEKDKMSGGF------NHGGFLQGHCFAVLCLVAIEKLIFSGSEDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVK 897
            E+  +      V  ++ H   +++ T  +D  I++W+    D  RT K  T   +                        F  F    T   H   VS +A       + + S DKT+K W V  +   CV +F  H   V  +  NQD   + +CS+D +V++W       +   RE+ H +       +SS + ++ ++  +         FL SGS D +I  W+   +S G        H  +++G  F         K I S ++D TIR+W          C+  L+ H         SL+  K      V + S+DQT KVW  +
Sbjct:  100 EKYALSGHRSPVTRVIFHPVFSVMVTASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECLRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIKMWEV--QTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHEHVVECISWAPESSYSTISDATGSETKRSGKPGPFLLSGSRDKTIKMWD---ISIGMCLMTLVGHDNWVRGVQFH-----PGGKFILSCADDKTIRIWDYKN----KRCMKTLNAHEH----FVTSLDFHKTAP--YVVTGSVDQTVKVWECR 410          
BLAST of DC900143 vs. ExPASy Swiss-Prot
Match: LIS1A_XENLA (Lissencephaly-1 homolog A OS=Xenopus laevis GN=pafah1b1-A PE=2 SV=3)

HSP 1 Score: 74.7146 bits (182), Expect = 1.195e-12
Identity = 79/331 (23.87%), Postives = 129/331 (38.97%), Query Frame = 1
Query:   37 ERGFIKARHGEVRAILAHG--NMLFTTHKDCKIRIWNXTVSDNFRTKKVTTLPRRS----------------------SFLSFSKSNTQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSVKIW-------RRVYRENSHTLTMTLKFQQSSVNALALSSFFDNY-------FLYSGSSDGSINFWEKDKMSGGF------NHGGFLQGHCFAVLCLVAIEKLIFSGSEDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVK 897
            E+  +      V  ++ H   +++ T  +D  I++W+    D  RT K  T   +                        F  F    T   H   VS +A       + + S DKT+K W V  +   CV +F  H   V  +  NQD   + +CS+D +V++W       +   RE+ H +       +SS + ++ ++  +         FL SGS D +I  W+   +S G        H  +++G  F         K I S ++D TIR+W          C+  L+ H         SL+  K      V + S+DQT KVW  +
Sbjct:  100 EKYALSGHRSPVTRVIFHPVFSVMVTASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIKMWEV--QTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHEHVVECISWAPESSYSTISDATGSETKKSGKPGPFLLSGSRDKTIKMWD---ISIGMCLMTLVGHDNWVRGVQFH-----PGGKFILSCADDKTIRIWDYKN----KRCMKTLNAHEH----FVTSLDFHKTAP--YVVTGSVDQTVKVWECR 410          
BLAST of DC900143 vs. ExPASy Swiss-Prot
Match: YH92_CAEEL (Uncharacterized WD repeat-containing protein ZC302.2 OS=Caenorhabditis elegans GN=ZC302.2 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 2.662e-12
Identity = 73/321 (22.74%), Postives = 122/321 (38.01%), Query Frame = 1
Query:   13 VWRQPDCVERGFIKARHGEVRAILAH-----GNMLFTTHKDCKIRIWNXTVSDNFRTKKVTTL-------PRRSSFLSFSKSNT---------------QQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSG-GFNHGGFLQGHCFAVLCLVAIEKLIFSGSEDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWR 891
            + ++P+  E   +K   G  +++        G  L T   D +I++WN       +T     L          S F++ +  +T                + H + V C +F     L+ +  FD+TV+ W    K   CV    AH   + +I  N D   + T S DG +++W         TL  T     + V  +  S   +  +L S   D S+  W+  K     + +G   + +C      V + K I SGSED  I VW         + + +L+GH  PV    +   +  +  G L      D   ++WR
Sbjct:  194 ITKKPENGEFSLVKTISGHTKSVSVIKFSYCGKYLGTGSADKQIKVWNTVDMTYLQTLASHQLGINDFSWSSNSQFIASASDDTTVKIFDVISGACLRTMRGHTNYVFCCSFNPQSSLIASAGFDETVRVWDF--KTGLCVKCIPAHSDPITSISYNHDGNTMATSSYDGCIRVWDAASGSCLKTLVDT---DHAPVTFVCFSP--NGKYLLSAQLDSSLKLWDPKKAKPLKYYNGHKNKKYCLFANMSVPLGKHIISGSEDGRILVWSIQT----KQIVQILEGHTTPVLATDSHPTLNIIASGGL----EPDNVIRIWR 499          
BLAST of DC900143 vs. ExPASy Swiss-Prot
Match: Y2800_ANASP (Uncharacterized WD repeat-containing protein alr2800 OS=Anabaena sp. (strain PCC 7120) GN=alr2800 PE=4 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.012e-11
Identity = 77/308 (25.00%), Postives = 123/308 (39.94%), Query Frame = 1
Query:   76 AILAHGNMLFTTHKDCKIRIWNXTVSDNFRTKKVTTLPRRSS----FLSFSKS------------------------NTQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQ---GHCFAVLCLV--AIEKLIFSGSEDTTIRVWRRAEGGCY-HECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVK 897
            A    G +L T   DC +R+W        ++ K+  + R  S    F+ FS                           T   H   V  +AF+     L + S DKT+K W + D   TC+ +   H   V  +  + D   + + ++D ++K+W      +      TLK     V ++A S+  D   L SGS D +I  W        ++ G  L+   GH  +V  +      K++ SGS D TI++W      C  H C+  L GH   V  +A S +      G  +   SLDQ+ ++W  +
Sbjct:  649 AFSPEGQLLATCDTDCHVRVW------EVKSGKLLLICRGHSNWVRFVVFSPDGEILASCGADENVKLWSVRDGVCIKTLTGHEHEVFSVAFHPDGETLASASGDKTIKLWDIQDG--TCLQTLTGHTDWVRCVAFSPDGNTLASSAADHTIKLW----DVSQGKCLRTLKSHTGWVRSVAFSA--DGQTLASGSGDRTIKIW-------NYHTGECLKTYIGHTNSVYSIAYSPDSKILVSGSGDRTIKLW-----DCQTHICIKTLHGHTNEVCSVAFSPD------GQTLACVSLDQSVRLWNCR 924          

HSP 2 Score: 70.4774 bits (171), Expect = 2.253e-11
Identity = 80/325 (24.62%), Postives = 126/325 (38.77%), Query Frame = 1
Query:    7 IRVWRQPDCVERGFIKARHGEVRAILA-----HGNMLFTTHKDCKIRIWNXTVSDNFRT--------KKVTTLPRRSSFLSFSKSNTQ--------------QQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVLCLVAIE--KLIFSGSEDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRV 894
            I++W   DC     IK  HG    + +      G  L     D  +R+WN       +           V   P R    S S   T               + H D +  +AF      L + S D +V+ W +   +C  +   + H   V A+V +     + T S+D +VK+W      N  T        + S   L ++   D   L S S+D S+  W  D  +G     G L+GH   V   +     ++I + S D T+++W   +G    +CL  L GH   V  +A S +      G ++ S+S DQT ++W V
Sbjct:  876 IKLW---DCQTHICIKTLHGHTNEVCSVAFSPDGQTLACVSLDQSVRLWNCRTGQCLKAWYGNTDWALPVAFSPDRQILASGSNDKTVKLWDWQTGKYISSLEGHTDFIYGIAFSPDSQTLASASTDSSVRLWNISTGQCFQI--LLEHTDWVYAVVFHPQGKIIATGSADCTVKLW------NISTGQCLKTLSEHSDKILGMAWSPDGQLLASASADQSVRLW--DCCTG--RCVGILRGHSNRVYSAIFSPNGEIIATCSTDQTVKIWDWQQG----KCLKTLTGHTNWVFDIAFSPD------GKILASASHDQTVRIWDV 1175          

HSP 3 Score: 70.0922 bits (170), Expect = 2.943e-11
Identity = 62/242 (25.62%), Postives = 102/242 (42.15%), Query Frame = 1
Query:   70 VRAILAH--GNMLFTTHKDCKIRIWNXTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVLCLVAIEKLIFSGSEDTTIRVWRRAEGGCYHECLAVLDGHR 789
            V A++ H  G ++ T   DC +++WN +     +T                      +H D +  MA+     LL + S D++V+ W     RC  V     H + V + + + +   + TCS+D +VKIW     +   TLT    +    V  +A S   D   L S S D ++  W  D  +G  +H      H  + +      +++ SGS+D T+R+W    G    ECL +L   R
Sbjct: 1023 VYAVVFHPQGKIIATGSADCTVKLWNISTGQCLKTLS--------------------EHSDKILGMAWSPDGQLLASASADQSVRLWDCCTGRC--VGILRGHSNRVYSAIFSPNGEIIATCSTDQTVKIWDWQQGKCLKTLTGHTNW----VFDIAFSP--DGKILASASHDQTVRIW--DVNTGKCHHICIGHTHLVSSVAFSPDGEVVASGSQDQTVRIWNVKTG----ECLQILRAKR 1230          
The following BLAST results are available for this feature:
BLAST of DC900143 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 40
Match NameE-valueIdentityDescription
LIS1_DICDI5.363e-1323.91Lissencephaly-1 homolog OS=Dictyostelium discoideu... [more]
LIS1_BOVIN5.363e-1323.56Platelet-activating factor acetylhydrolase IB subu... [more]
LIS1_DROME9.149e-1324.14Lissencephaly-1 homolog OS=Drosophila melanogaster... [more]
LIS1_CHICK9.149e-1323.56Platelet-activating factor acetylhydrolase IB subu... [more]
LIS1_XENTR1.195e-1223.87Lissencephaly-1 homolog OS=Xenopus tropicalis GN=p... [more]
LIS1_PIG1.195e-1223.26Platelet-activating factor acetylhydrolase IB subu... [more]
LIS1B_XENLA1.195e-1223.87Lissencephaly-1 homolog B OS=Xenopus laevis GN=paf... [more]
LIS1A_XENLA1.195e-1223.87Lissencephaly-1 homolog A OS=Xenopus laevis GN=paf... [more]
YH92_CAEEL2.662e-1222.74Uncharacterized WD repeat-containing protein ZC302... [more]
Y2800_ANASP1.012e-1125.00Uncharacterized WD repeat-containing protein alr28... [more]

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Properties
Property NameValue
Genbank descriptionDC900143 VSS Citrus sinensis cDNA clone VS27V63 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900143 ID=DC900143; Name=DC900143; organism=Citrus sinensis; type=EST; length=1193bp
CCCCGTATTCGTGTATGGAGGCAACCGGACTGCGTTGAGCGTGGCTTCAT
CAAGGCAAGGCATGGAGAAGTTCGTGCCATTTTAGCTCACGGTAACATGC
TTTTCACCACACATAAGGATTGCAAAATACGAATTTGGAACTTNACGGTT
TCGGACAATTTTCGAACCAAAAAGGTCACAACCTTGCCCAGAAGAAGCTC
ATTTCTTTCCTTCTCCAAATCAAACACCCAACAACAACACAGAGATTGCG
TATCTTGCATGGCATTTTACCACGCAGAGGGGCTCTTATACACCGGCTCG
TTTGACAAAACAGTGAAAGCTTGGAGGGTTTTGGACAAAAGATGTACATG
TGTCGACTCATTTGTTGCACATGAAAGTAATGTCAATGCAATAGTAGTGA
ACCAAGATGATGGGTTTGTTTTCACTTGCTCTTCTGATGGGTCGGTGAAA
ATATGGAGGCGTGTGTACAGAGAAAATTCTCATACGCTCACAATGACGCT
AAAATTCCAGCAATCCTCAGTTAACGCCTTAGCATTAAGCTCATTTTTCG
ACAATTATTTCCTCTACTCAGGTTCTTCAGATGGTTCGATAAACTTTTGG
GAGAAAGACAAAATGTCTGGTGGATTTAACCATGGAGGGTTCTTACAAGG
CCATTGTTTTGCGGTTCTGTGCTTAGTGGCTATTGAGAAGTTGATATTCA
GCGGCTCAGAGGATACAACGATTAGGGTTTGGAGGAGAGCTGAAGGAGGT
TGCTACCATGAATGTCTTGCGGTGTTAGATGGGCATAGAGGGCCTGTGAG
GTGCTTGGCTGCTAGCTTGGAAATGGAGAAAGTTGTTATGGGGTTTTTAG
TTTATAGTTCAAGTTTAGATCAAACTTTTAAAGTATGGAGAGTTAAGGTT
ATGCCTGATCAGGAGAAAACAATGTGCTTGGATTATTCCGACTATCACAG
TAACTCGAAGACGACCACTACAAAAATGGACTACGAGATGAGTCCTGTGT
TGTCTCCTTCATGGGTTGAGAAGAAGATGAAAGCCAGTAATTATTTTCAA
TAAATCAATACGATCATTATCTAGTTCAGTTCCTCGCCAATTAGCTATGT
CTTGTAAAAATTGAACAACTGAGTTTCATTTATTTGCTCAGCTTATTTGA
AGTACTCCATTTAAATCAAAAATTTATCTTAATTAATTATAAT
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