DC900143

Overview
NameDC900143
Unique NameDC900143
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1193
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC900143 vs. ExPASy Swiss-Prot
Match: WDR69_BOVIN (WD repeat-containing protein 69 OS=Bos taurus GN=WDR69 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.321e-11
Identity = 64/225 (28.44%), Postives = 98/225 (43.56%), Query Frame = 1
Query:  223 NTQQQHRDCVSCMAFYHAEG-LLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVLCLVAIE--KLIFSGSEDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVW 888
            +T + HR+ V  +AF +  G  + TGSFDKT K W V  +   C  +F  H + +  +  N     V T S D + K+W     E   TLT        S   ++LS       + +GS D ++  WE D     +     L GHC  +   V      LI +GS D T ++W    G    +C+A L GH   +      L+      G L+ ++S D T +++
Sbjct:  128 HTLEGHRNVVYAIAFNNPYGDKIATGSFDKTCKLWSV--ETGKCYHTFRGHTAEIVCLSFNPQSTLVATGSMDTTAKLWDIQSGEEVFTLT------GHSAEIISLSFNTSGNRIITGSFDHTVTVWEADTGRKVYT----LIGHCAEISSAVFNWDCSLILTGSMDKTCKLWDAVNG----KCVATLTGHDDEI------LDSCFDYTGKLIATASADGTARIF 330          
BLAST of DC900143 vs. ExPASy Swiss-Prot
Match: COPB2_DROME (Coatomer subunit beta' OS=Drosophila melanogaster GN=beta'Cop PE=2 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 1.321e-11
Identity = 58/220 (26.36%), Postives = 93/220 (42.27%), Query Frame = 1
Query:   82 LAHGNMLFTTHKDCKIRIWNXTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSS-DGSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHC--FAVLCLVAIEKLIFSGSEDTTIRVW 732
            +A  N + T   D +IR++N             TL +  SF         + H D + C+A +  + L+ T S D  +K W   +K   C   F  H   V  IV N  D   F  +S D +VK+W+      S+    TL+  +  VN +      D  +L SG+ D  +  W+    +        L+GH    + +C      ++ +GSED T+R+W
Sbjct:   66 VARKNWILTGSDDMQIRVFNYN-----------TLEKVHSF---------EAHSDYLRCIAVHPTQPLVLTSSDDMLIKLWN-WEKMWACQRVFEGHTHYVMQIVFNPKDNNTFASASLDRTVKVWQL----GSNFANFTLEGHEKGVNCVDYYHGGDKPYLISGADDRLVKIWDYQNKTCVQT----LEGHAQNISAVCFHPELPIVLTGSEDGTVRIW 256          
BLAST of DC900143 vs. ExPASy Swiss-Prot
Match: C3H17_ORYSJ (Zinc finger CCCH domain-containing protein 17 OS=Oryza sativa subsp. japonica GN=Os02g0677700 PE=2 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 1.321e-11
Identity = 64/219 (29.22%), Postives = 91/219 (41.55%), Query Frame = 1
Query:  232 QQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVLCLVAIEKLIFSGSEDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVW 888
            Q H   V+ +A       LY+GS D TV+ W     +C  V   +     +  ++   +  ++F    D +VK+W    +       M L      V ALA+     N  L++ + DG I  W     + GF     L GH  AV+ LV     ++S S D TIRVW  A      +C+  L  H G V        M  +     + S SLDQT KVW
Sbjct:  147 QGHEKVVTGIALPAGSDKLYSGSKDGTVRMWDCQTGQCAGV---INMGREIGCMI--SEGPWLFVGIPD-AVKVWNMQTQAE-----MNLTGPTGQVYALAVG----NELLFAATQDGRILAWRFSAATNGFEPAASLVGHQLAVVSLVVGAMRLYSASMDKTIRVWDLAT----LQCIQTLSDHTGVV--------MSVLCWDQFLLSCSLDQTIKVW 338          
BLAST of DC900143 vs. ExPASy Swiss-Prot
Match: POF1_SCHPO (F-box/WD repeat-containing protein pof1 OS=Schizosaccharomyces pombe GN=pof1 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 2.253e-11
Identity = 72/269 (26.77%), Postives = 107/269 (39.78%), Query Frame = 1
Query:    7 IRVWRQPDCVERGFIKARHGEVRAILAHGNMLFTTHKDCKIRIWNXTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLD-KRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVLCLVAIEKLIFSGSEDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLA 810
            IR+W      +   ++     V  +      L +   D  IRIWN      +RT +  ++                 H D V C+ F     LL +GS D TVK W     KR T       H   VN++ + +D G V + S D ++KIW       ++T   T       V +LAL+    +  L+S S DG+I  W+ +K          L GH   V  + A    + SG+ D  ++VW         EC+  L  H  PV  +A
Sbjct:  295 IRLWNLATFQQVALLEGHSSGVTCLQFDQCKLISGSMDKTIRIWN------YRTSECISI--------------LHGHTDSVLCLTFDST--LLVSGSADCTVKLWHFSGGKRIT----LRGHTGPVNSVRIIRDRGLVLSGSDDSTIKIWSL----ETNTCLHTFSAHIGPVQSLALA----DSRLFSCSLDGTIKQWDIEKKKCVHT----LFGHIEGVWEIAADHLRLISGAHDGVVKVWEAC------ECVHTLKNHSEPVTSVA 519          

HSP 2 Score: 68.5514 bits (166), Expect = 8.563e-11
Identity = 66/233 (28.33%), Postives = 101/233 (43.35%), Query Frame = 1
Query:  238 HRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAV--LCLVAIEKLIFSGSEDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVKVMPDQEKTMCL 930
            H D V C+       +L +GS+D T++ W +   +   +     H S V  +  +Q    + + S D +++IW   YR +       L     SV  L     FD+  L SGS+D ++  W     SGG      L+GH   V  + ++    L+ SGS+D+TI++W      C H        H GPV+ LA        +    ++S SLD T K W      D EK  C+
Sbjct:  272 HSDGVMCLQL--VRNILASGSYDATIRLWNLATFQQVAL--LEGHSSGVTCLQFDQCK--LISGSMDKTIRIWN--YRTSE--CISILHGHTDSVLCLT----FDSTLLVSGSADCTVKLWH---FSGGKRI--TLRGHTGPVNSVRIIRDRGLVLSGSDDSTIKIWSLETNTCLH----TFSAHIGPVQSLA--------LADSRLFSCSLDGTIKQW------DIEKKKCV 467          
BLAST of DC900143 vs. ExPASy Swiss-Prot
Match: POF11_SCHPO (F-box/WD repeat-containing protein pof11 OS=Schizosaccharomyces pombe GN=pof11 PE=1 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 2.253e-11
Identity = 58/225 (25.78%), Postives = 95/225 (42.22%), Query Frame = 1
Query:  238 HRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVL--------CLVAIEKLIFSGSEDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVW 888
            H   V C+ F     LL +GS D T+  W   ++R   V  +  H  NV  +VV+++  ++ + S D + ++WR      +      L+   +SVN++  SS      + + SSD ++  W+               GHC  ++        C     K I SGS D TIR++  + G    + L +L GH   +R        EK+V G        D T ++W
Sbjct:  260 HSGSVLCLDFCRRRNLLVSGSSDSTIIIWDWQNRRPLKV--YFGHTDNVLGVVVSEN--YIISSSRDHTARVWRLDATSPAEACMHVLRGHLASVNSVQYSS--KTGLIVTASSDRTLRTWD------------ITTGHCIRIIHAHQRGIACAQYNGKFIVSGSSDLTIRIFEASSG----KLLRMLQGHEDLIR--TVRFNDEKIVSG------GYDGTVRIW 454          
BLAST of DC900143 vs. ExPASy Swiss-Prot
Match: MHCKC_DICDI (Myosin heavy chain kinase C OS=Dictyostelium discoideum GN=mhkC PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 2.253e-11
Identity = 59/217 (27.19%), Postives = 93/217 (42.86%), Query Frame = 1
Query:  286 LYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQD-DGFVFTCSSDGSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVLCLVAIEKLIFSGSEDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVKVMPDQEKTMCLD 933
            LY+GS D  +  W  ++ +   V +  AH  ++ A++     D  + T  +D  VK W      N+      +K + + VN +    F  +  LY+G +D ++  W+       +     L GH  A+  + A+  L+FSGS D  I VW  A G      L    GH G V+ L A   M        +YS S D+T ++W +K         C D
Sbjct:  524 LYSGSNDGQIGVWDAVELKH--VTNIKAHGKSIRAVIKRPGFDQNILTAGADSLVKEWDI----NTQQTIKEIK-ESNEVNTI----FIQDNLLYTGCNDKTVKVWDMRS----YECVKTLSGHTRAIKSVCAMGNLLFSGSNDQQIYVWNLATG----TILTNFQGHEGWVKTLYAHNNM--------LYSGSHDETIRIWDLKTTRCVNTIKCKD 713          
BLAST of DC900143 vs. ExPASy Swiss-Prot
Match: CIAO1_CANGA (Probable cytosolic iron-sulfur protein assembly protein 1 OS=Candida glabrata GN=CIA1 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 3.844e-11
Identity = 66/242 (27.27%), Postives = 106/242 (43.80%), Query Frame = 1
Query:  238 HRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSF--VAHESNVNAIVVNQDDGFVFTCSSDGSVKIWRR--VYRENSHTLTMTL----KFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVLCLVAIEK--LIFSGSEDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRV--KVMPDQEKTMC 927
            H D V  + F    GLL TGS D+ +K  ++ + +   +D      H+  V ++        +   S D ++ IW +  +  E    L M L    +  ++ V  ++ S   D   L + S D S+  WE D+    +     LQ H   V  +V   K  L+ S S D T+R+W+  +     EC AVL GH G + C   S E + +     + S S D T +VW+       DQ++ +C
Sbjct:   12 HNDKVWSIDFEPVRGLLATGSTDRAIKVLQLKNGKENLLDVLDDTVHKKAVRSVAWRPHSDLLAAGSFDSTISIWTQSDLDLEEGAKLEMELLAIIEGHENEVKGISWSQ--DGCLLATCSRDKSVWIWETDEAGEEYECISVLQEHSQDVKHVVWHTKHNLLASSSYDDTVRIWKDYDDDW--ECAAVLTGHEGTIWCSDFSKEEDPI----RLCSGSDDSTVRVWKYIGDDEDDQQEWVC 245          
BLAST of DC900143 vs. ExPASy Swiss-Prot
Match: WDR69_MACFA (WD repeat-containing protein 69 OS=Macaca fascicularis GN=WDR69 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 5.020e-11
Identity = 72/304 (23.68%), Postives = 124/304 (40.79%), Query Frame = 1
Query:  223 NTQQQHRDCVSCMAFYHAEG-LLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVLCLVAIE--KLIFSGSEDTTIRVWRRAEGGCY--------------------------------------HECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVKVMPDQEKTMCLDYSDYHSNSKTTTTKMDYEMSPVLSPS 1011
            NT + HR+ V  +AF +  G    TGSFDKT K W V  +   C  +F  H + +  +  N     V T S D + K+W     E       TL+   + + +L+ ++  D   + +GS D ++  W+ D  +GG      L GHC  +   +      LI +GS D T  +W    G C                                        +C+A L+GH G +  ++ + +  +++ G      S D+T ++W      D +   CL   + H++   + T  +Y+ + V++ S
Sbjct:  128 NTLEGHRNVVYAIAFNNPYGDKTATGSFDKTCKLWSV--ETGKCYHTFRGHTAEIVCLSFNPQSTLVATGSMDTTAKLWNIQNGEE----VCTLRGHSAEIISLSFNTSGDR--IITGSFDHTVVVWDAD--TGG--KVNILIGHCAEISSALFNWDCSLILTGSMDKTCMLWDATNGKCVATLTGHDDEILDSCFDYTGKLIATASADGTARIFSAATRKCIAKLEGHEGEISKISFNPQGNRLLTG------SSDKTARIW------DAQTGQCLQVLEGHTDEIFSCT-FNYKGNIVITGS 406          
BLAST of DC900143 vs. ExPASy Swiss-Prot
Match: TG125_CAEBR (WD repeat-containing protein tag-125 OS=Caenorhabditis briggsae GN=tag-125 PE=4 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 5.020e-11
Identity = 70/258 (27.13%), Postives = 104/258 (40.31%), Query Frame = 1
Query:  145 TVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDN-YFLYSGSSDGSINFWEKDKMSGGFNHGGFL---QGH-----CFAVLCLVAIEKLIFSGSEDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWR 891
            T SD+ +T K+  +P      +   + T + H + V C  F     L+ +GSFD++V+ W V  +   CV +  AH   V+A+  N+D   + + S DG V+IW     +   TL             +A   F  N  ++ S + D ++  W+       F  G  L   QGH     C      V   K I SGSED  I VW         E +  L+GH   V           +  G L      D T ++WR
Sbjct:  138 TASDD-KTLKIYEVP------TVKMAKTLKGHTNYVFCCNFNPQSSLVVSGSFDESVRIWDV--RTGMCVKTLPAHSDPVSAVSFNRDGSLITSGSYDGLVRIWDTANGQCVKTLV------DDENPPVAFVKFSPNGKYILSSNLDNTLKLWD-------FGKGKTLKQYQGHENNKYCIFANFSVTGGKWIISGSEDCKIYVWNLQT----KEVVQSLEGHTQAVIASDCHPMQNMIASGAL----EPDNTIRIWR 365          
BLAST of DC900143 vs. ExPASy Swiss-Prot
Match: WDR69_HUMAN (WD repeat-containing protein 69 OS=Homo sapiens GN=WDR69 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 8.563e-11
Identity = 63/226 (27.88%), Postives = 99/226 (43.81%), Query Frame = 1
Query:  223 NTQQQHRDCVSCMAFYHAEG-LLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVLCLVAIE---KLIFSGSEDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVW 888
            NT + HR+ V  +AF +  G  + TGSFDKT K W V  +   C  +F  H + +  +  N     V T S D + K+W     E  +TL      +  S   ++LS       + +GS D ++  W+ D           L GHC A +   +      LI +GS D T ++W    G    +C+A L GH   +      L+      G L+ ++S D T +++
Sbjct:  128 NTLEGHRNVVYAIAFNNPYGDKIATGSFDKTCKLWSV--ETGKCYHTFRGHTAEIVCLSFNPQSTLVATGSMDTTAKLWDIQNGEEVYTL------RGHSAEIISLSFNTSGDRIITGSFDHTVVVWDADT----GRKVNILIGHC-AEISSASFNWDCSLILTGSMDKTCKLWDATNG----KCVATLTGHDDEI------LDSCFDYTGKLIATASADGTARIF 330          
The following BLAST results are available for this feature:
BLAST of DC900143 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 40
Match NameE-valueIdentityDescription
WDR69_BOVIN1.321e-1128.44WD repeat-containing protein 69 OS=Bos taurus GN=W... [more]
COPB2_DROME1.321e-1126.36Coatomer subunit beta' OS=Drosophila melanogaster ... [more]
C3H17_ORYSJ1.321e-1129.22Zinc finger CCCH domain-containing protein 17 OS=O... [more]
POF1_SCHPO2.253e-1126.77F-box/WD repeat-containing protein pof1 OS=Schizos... [more]
POF11_SCHPO2.253e-1125.78F-box/WD repeat-containing protein pof11 OS=Schizo... [more]
MHCKC_DICDI2.253e-1127.19Myosin heavy chain kinase C OS=Dictyostelium disco... [more]
CIAO1_CANGA3.844e-1127.27Probable cytosolic iron-sulfur protein assembly pr... [more]
WDR69_MACFA5.020e-1123.68WD repeat-containing protein 69 OS=Macaca fascicul... [more]
TG125_CAEBR5.020e-1127.13WD repeat-containing protein tag-125 OS=Caenorhabd... [more]
WDR69_HUMAN8.563e-1127.88WD repeat-containing protein 69 OS=Homo sapiens GN... [more]

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Properties
Property NameValue
Genbank descriptionDC900143 VSS Citrus sinensis cDNA clone VS27V63 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900143 ID=DC900143; Name=DC900143; organism=Citrus sinensis; type=EST; length=1193bp
CCCCGTATTCGTGTATGGAGGCAACCGGACTGCGTTGAGCGTGGCTTCAT
CAAGGCAAGGCATGGAGAAGTTCGTGCCATTTTAGCTCACGGTAACATGC
TTTTCACCACACATAAGGATTGCAAAATACGAATTTGGAACTTNACGGTT
TCGGACAATTTTCGAACCAAAAAGGTCACAACCTTGCCCAGAAGAAGCTC
ATTTCTTTCCTTCTCCAAATCAAACACCCAACAACAACACAGAGATTGCG
TATCTTGCATGGCATTTTACCACGCAGAGGGGCTCTTATACACCGGCTCG
TTTGACAAAACAGTGAAAGCTTGGAGGGTTTTGGACAAAAGATGTACATG
TGTCGACTCATTTGTTGCACATGAAAGTAATGTCAATGCAATAGTAGTGA
ACCAAGATGATGGGTTTGTTTTCACTTGCTCTTCTGATGGGTCGGTGAAA
ATATGGAGGCGTGTGTACAGAGAAAATTCTCATACGCTCACAATGACGCT
AAAATTCCAGCAATCCTCAGTTAACGCCTTAGCATTAAGCTCATTTTTCG
ACAATTATTTCCTCTACTCAGGTTCTTCAGATGGTTCGATAAACTTTTGG
GAGAAAGACAAAATGTCTGGTGGATTTAACCATGGAGGGTTCTTACAAGG
CCATTGTTTTGCGGTTCTGTGCTTAGTGGCTATTGAGAAGTTGATATTCA
GCGGCTCAGAGGATACAACGATTAGGGTTTGGAGGAGAGCTGAAGGAGGT
TGCTACCATGAATGTCTTGCGGTGTTAGATGGGCATAGAGGGCCTGTGAG
GTGCTTGGCTGCTAGCTTGGAAATGGAGAAAGTTGTTATGGGGTTTTTAG
TTTATAGTTCAAGTTTAGATCAAACTTTTAAAGTATGGAGAGTTAAGGTT
ATGCCTGATCAGGAGAAAACAATGTGCTTGGATTATTCCGACTATCACAG
TAACTCGAAGACGACCACTACAAAAATGGACTACGAGATGAGTCCTGTGT
TGTCTCCTTCATGGGTTGAGAAGAAGATGAAAGCCAGTAATTATTTTCAA
TAAATCAATACGATCATTATCTAGTTCAGTTCCTCGCCAATTAGCTATGT
CTTGTAAAAATTGAACAACTGAGTTTCATTTATTTGCTCAGCTTATTTGA
AGTACTCCATTTAAATCAAAAATTTATCTTAATTAATTATAAT
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