CN186042

Overview
NameCN186042
Unique NameCN186042
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length811
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN186042_ssr504 microsatellite CN186042_ssr504:504..515. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CN186042 vs. ExPASy Swiss-Prot
Match: ABR1_ARATH (Ethylene-responsive transcription factor ABR1 OS=Arabidopsis thaliana GN=ABR1 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.751e-14
Identity = 36/56 (64.29%), Postives = 40/56 (71.43%), Query Frame = -1
Query:  521 YRGIRQRPWGKWAAEIRDPYKGVRVWLGTFNTXXXXXXXXXXXAKRIRGDKAKLNF 688
            YRG+RQRPWGKWAAEIRDP+K  RVWLGTF+            A R RG+KAKLNF
Sbjct:  185 YRGVRQRPWGKWAAEIRDPFKAARVWLGTFDNAESAARAYDEAALRFRGNKAKLNF 240          
BLAST of CN186042 vs. ExPASy Swiss-Prot
Match: EF109_ARATH (Ethylene-responsive transcription factor ERF109 OS=Arabidopsis thaliana GN=ERF109 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.593e-14
Identity = 43/97 (44.33%), Postives = 59/97 (60.82%), Query Frame = -1
Query:  521 KSHPKQP-LKVKNEKAEDSSNKAARVEGKEK-KTQRVRKNVYRGIRQRPWGKWAAEIRDPYKGVRVWLGTFNTXXXXXXXXXXXAKRIRGDKAKLNF 805
            K+H ++  +   + +  +SS  A + EG  K + ++ +KN YRG+RQRPWGK+AAEIRDP +  RVWLGTF T           A   RG +AKLNF
Sbjct:   95 KNHQQEEEITSSSNRRRESSPVAKKAEGGGKIRKRKNKKNGYRGVRQRPWGKFAAEIRDPKRATRVWLGTFETAEDAARAYDRAAIGFRGPRAKLNF 191          
BLAST of CN186042 vs. ExPASy Swiss-Prot
Match: EF114_ARATH (Ethylene-responsive transcription factor ERF114 OS=Arabidopsis thaliana GN=ERF114 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 6.129e-14
Identity = 36/61 (59.02%), Postives = 41/61 (67.21%), Query Frame = -1
Query:  521 VRKNVYRGIRQRPWGKWAAEIRDPYKGVRVWLGTFNTXXXXXXXXXXXAKRIRGDKAKLNF 703
            +R+  YRG+RQRPWGKWAAEIRDP K  RVWLGTF T           A + +G KAKLNF
Sbjct:   85 LRRRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFETAESAALAYDEAALKFKGSKAKLNF 145          
BLAST of CN186042 vs. ExPASy Swiss-Prot
Match: EF113_ARATH (Ethylene-responsive transcription factor ERF113 OS=Arabidopsis thaliana GN=ERF113 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.045e-13
Identity = 36/60 (60.00%), Postives = 40/60 (66.67%), Query Frame = -1
Query:  521 RKNVYRGIRQRPWGKWAAEIRDPYKGVRVWLGTFNTXXXXXXXXXXXAKRIRGDKAKLNF 700
            R+  YRG+RQRPWGKWAAEIRDP K  RVWLGTF T           A + +G KAKLNF
Sbjct:   35 RRRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFETAEEAALAYDRAALKFKGTKAKLNF 94          
BLAST of CN186042 vs. ExPASy Swiss-Prot
Match: ERF4_TOBAC (Ethylene-responsive transcription factor 4 OS=Nicotiana tabacum GN=ERF4 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.972e-12
Identity = 36/71 (50.70%), Postives = 46/71 (64.79%), Query Frame = -1
Query:  521 VEGKEKKTQRVRKNVYRGIRQRPWGKWAAEIRDPYKGVRVWLGTFNTXXXXXXXXXXXAKRIRGDKAKLNF 733
            ++G   KT  V++  YRG+R+RPWG++AAEIRDP K  RVWLGTF+T           A+  RG KAK NF
Sbjct:   12 LKGGNVKTDGVKEVHYRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEEAAKAYDTAAREFRGPKAKTNF 82          
BLAST of CN186042 vs. ExPASy Swiss-Prot
Match: ERF4_NICSY (Ethylene-responsive transcription factor 4 OS=Nicotiana sylvestris GN=ERF4 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.972e-12
Identity = 36/71 (50.70%), Postives = 46/71 (64.79%), Query Frame = -1
Query:  521 VEGKEKKTQRVRKNVYRGIRQRPWGKWAAEIRDPYKGVRVWLGTFNTXXXXXXXXXXXAKRIRGDKAKLNF 733
            ++G   KT  V++  YRG+R+RPWG++AAEIRDP K  RVWLGTF+T           A+  RG KAK NF
Sbjct:   12 LKGGNVKTNGVKEVHYRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEEAAKAYDTAAREFRGPKAKTNF 82          
BLAST of CN186042 vs. ExPASy Swiss-Prot
Match: ERF77_ARATH (Ethylene-responsive transcription factor 10 OS=Arabidopsis thaliana GN=ERF10 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.575e-12
Identity = 40/85 (47.06%), Postives = 49/85 (57.65%), Query Frame = -1
Query:  521 KNEKAEDSSNKAARVEGKEKKTQRVRKNVYRGIRQRPWGKWAAEIRDPYKGVRVWLGTFNTXXXXXXXXXXXAKRIRGDKAKLNF 775
            K  K   +  KA  V    +K++ VR   YRG+R+RPWG++AAEIRDP K  RVWLG+FNT           A R RG KA  NF
Sbjct:   27 KGVKKRKNVTKALAVNDGGEKSKEVR---YRGVRRRPWGRYAAEIRDPVKKKRVWLGSFNTGEEAARAYDSAAIRFRGSKATTNF 108          
BLAST of CN186042 vs. ExPASy Swiss-Prot
Match: ERF82_ARATH (Ethylene-responsive transcription factor 3 OS=Arabidopsis thaliana GN=ERF3 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.363e-12
Identity = 47/144 (32.64%), Postives = 68/144 (47.22%), Query Frame = -1
Query:  272 VRKNVYRGIRQRPWGKWAAEIRDPYKGVRVWLGTFNTXXXXXXXXXXXAKRIRGDKAKLNFXXXXXXXXXXXAKKRCMPSPELTQPRFETIGTPPAPAPSPWVGFGYQNEFYQPRAVDDEFELSQQISSLESFLGLEPLMSQPS 703
            V++  +RG+R+RPWG++AAEIRDP+K  RVWLGTF++           A+ +RG KAK NF                 P P L   RF  I         P++      +  Q   + +    S   S++ESF G  P   +P+
Sbjct:   23 VKEIRFRGVRKRPWGRFAAEIRDPWKKARVWLGTFDSAEEAARAYDSAARNLRGPKAKTNF----------PIDSSSPPPPNL---RFNQIRNQNQNQVDPFMDHRLFTDHQQQFPIVNRPTSSSMSSTVESFSGPRPTTMKPA 153          
BLAST of CN186042 vs. ExPASy Swiss-Prot
Match: CRF2_ARATH (Ethylene-responsive transcription factor CRF2 OS=Arabidopsis thaliana GN=CRF2 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.363e-12
Identity = 41/95 (43.16%), Postives = 50/95 (52.63%), Query Frame = -1
Query:  521 KSHPKQPLKVKNEKAEDSSNKAARVEGKEKKTQRVRKNVYRGIRQRPWGKWAAEIRDPYKGVRVWLGTFNTXXXXXXXXXXXAKRIRGDKAKLNF 805
            +S  +Q   VK+E        A      EKK        +RG+RQRPWGKWAAEIRDP K VR+WLGT+NT           A ++RG  A  NF
Sbjct:   91 ESKKRQKRAVKSESTVSPVVSATTTTTGEKK--------FRGVRQRPWGKWAAEIRDPLKRVRLWLGTYNTAEEAAMVYDNAAIQLRGPDALTNF 177          
BLAST of CN186042 vs. ExPASy Swiss-Prot
Match: CRF1_ARATH (Ethylene-responsive transcription factor CRF1 OS=Arabidopsis thaliana GN=CRF1 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.363e-12
Identity = 41/86 (47.67%), Postives = 51/86 (59.30%), Query Frame = -1
Query:  521 SNKAARVEGKEKK---------TQRVRKNVYRGIRQRPWGKWAAEIRDPYKGVRVWLGTFNTXXXXXXXXXXXAKRIRGDKAKLNF 751
            S+K   ++ K KK         T   RK  +RG+RQRPWGKWAAEIRDP + VRVWLGTF+T           A ++RG  A+LNF
Sbjct:   59 SDKEKPMKKKRKKRVVTVPVVVTTATRK--FRGVRQRPWGKWAAEIRDPSRRVRVWLGTFDTAEEAAIVYDNAAIQLRGPNAELNF 142          
The following BLAST results are available for this feature:
BLAST of CN186042 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
ABR1_ARATH2.751e-1464.29Ethylene-responsive transcription factor ABR1 OS=A... [more]
EF109_ARATH3.593e-1444.33Ethylene-responsive transcription factor ERF109 OS... [more]
EF114_ARATH6.129e-1459.02Ethylene-responsive transcription factor ERF114 OS... [more]
EF113_ARATH1.045e-1360.00Ethylene-responsive transcription factor ERF113 OS... [more]
ERF4_TOBAC1.972e-1250.70Ethylene-responsive transcription factor 4 OS=Nico... [more]
ERF4_NICSY1.972e-1250.70Ethylene-responsive transcription factor 4 OS=Nico... [more]
ERF77_ARATH2.575e-1247.06Ethylene-responsive transcription factor 10 OS=Ara... [more]
ERF82_ARATH3.363e-1232.64Ethylene-responsive transcription factor 3 OS=Arab... [more]
CRF2_ARATH3.363e-1243.16Ethylene-responsive transcription factor CRF2 OS=A... [more]
CRF1_ARATH3.363e-1247.67Ethylene-responsive transcription factor CRF1 OS=A... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002E11_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002E11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186042 ID=CN186042; Name=CN186042; organism=Citrus sinensis; type=EST; length=811bp
TTATTAGTATCGAGTCATTAACAACATAAAACACAAATTAAAATAAACAA
AGCTCTTTAACAACATAAACACAAAATCAAAACTACATAAACAGCATTAA
ACACTATAACTCAATACACAGACCCACACGAACACACAGCACGGCCACAA
CTCAATTCGTTTATTATTATTTTTCCTAACACAAGAACTGATTGCTGTTC
AGCTGCTGAGTCGCCGCCACGTCATCAAGCATCCAAAAGTCCACCGAGTC
ATACCCACCAGCACCGTTTCCACTCGGCTGACTCATTAATGGCTCCAATC
CCAAAAACGATTCCAAGCTCGAAATTTGCTGGCTCAGCTCAAACTCGTCG
TCTACTGCCCTGGGTTGATAAAACTCATTCTGATACCCAAACCCCACCCA
CGGGGACGGCGCCGGAGCCGGTGGGGTTCCGATGGTTTCAAATCTCGGCT
GAGTCAACTCAGGGGATGGCATGCAGCGTTTCTTAGCTGGGGGTGGAGCT
ATTGGCGGCGGCGGCTGAGCGAAGTTGAGCTTGGCCTTGTCGCCGCGGAT
ACGCTTGGCGGCTTCATCATAAGCTCTTGCGGCTTCTTCGGCTGTGTTGA
AAGTGCCGAGCCAAACGCGGACGCCCTTGTAAGGGTCTCTAATTTCAGCT
GCCCATTTTCCCCACGGCCTCTGCCGTATTCCTCTGTACACGTTCTTGCG
AACTCGCTGAGTCTTCTTCTCCTTCCCCTCAACACGAGCAGCTTTATTGC
TTGAATCTTCAGCCTTCTCATTTTTCACTTTGAGAGGTTGCTTAGGGTGG
GATTTGCCATT
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