CN186042

Overview
NameCN186042
Unique NameCN186042
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length811
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN186042_ssr504 microsatellite CN186042_ssr504:504..515. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CN186042 vs. ExPASy Swiss-Prot
Match: ERF99_ARATH (Ethylene-responsive transcription factor 13 OS=Arabidopsis thaliana GN=ERF13 PE=2 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 4.392e-12
Identity = 39/82 (47.56%), Postives = 50/82 (60.98%), Query Frame = -1
Query:  521 AEDSSNKAARVEGKEKKTQRVRKNVYRGIRQRPWGKWAAEIRDPYK-GVRVWLGTFNTXXXXXXXXXXXAKRIRGDKAKLNF 763
            AE++   A +  G     Q+  +  YRG+R+RPWGK+AAEIRDP K G RVWLGT+ T           A ++RG KAKLNF
Sbjct:   69 AEENKPPATKASGSHAPRQKGMQ--YRGVRRRPWGKFAAEIRDPKKNGARVWLGTYETPEDAAVAYDRAAFQLRGSKAKLNF 148          
BLAST of CN186042 vs. ExPASy Swiss-Prot
Match: EF102_ARATH (Ethylene-responsive transcription factor 5 OS=Arabidopsis thaliana GN=ERF5 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.392e-12
Identity = 45/94 (47.87%), Postives = 51/94 (54.26%), Query Frame = -1
Query:  521 KQPLKVKNEKAEDSSNKAARVEGKE--KKTQRVRKNVYRGIRQRPWGKWAAEIRDPYK-GVRVWLGTFNTXXXXXXXXXXXAKRIRGDKAKLNF 793
            K PLK+      +    AA     E  K      K  YRG+RQRPWGK+AAEIRDP K G RVWLGTF+T           A R+RG KA LNF
Sbjct:  119 KPPLKISLPAKTEWIQFAAENTKPEVTKPVSEEEKKHYRGVRQRPWGKFAAEIRDPNKRGSRVWLGTFDTAIEAARAYDEAAFRLRGSKAILNF 212          
BLAST of CN186042 vs. ExPASy Swiss-Prot
Match: DREB3_ARATH (Dehydration-responsive element-binding protein 3 OS=Arabidopsis thaliana GN=DREB3 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.737e-12
Identity = 41/92 (44.57%), Postives = 54/92 (58.70%), Query Frame = -1
Query:  521 LKVKNEKAEDSSNKAARVEGKEKKTQRVRKN----VYRGIRQRPWGKWAAEIRDPYKGVRVWLGTFNTXXXXXXXXXXXAKRIRGDKAKLNF 784
            L V N +++  S+K+ + E  EKKT+R R +    VYRG+R R WGKW +EIR+P K  R+WLGTF T           A  I+G  A LNF
Sbjct:   16 LLVPNSESDSVSDKS-KAEQSEKKTKRGRDSGKHPVYRGVRMRNWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVAALSIKGTAAILNF 106          
BLAST of CN186042 vs. ExPASy Swiss-Prot
Match: EF101_ARATH (Ethylene-responsive transcription factor 2 OS=Arabidopsis thaliana GN=ERF2 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 7.492e-12
Identity = 44/88 (50.00%), Postives = 51/88 (57.95%), Query Frame = -1
Query:  521 KAEDSSNKAARVEGKEKKT-----QRVRKNVYRGIRQRPWGKWAAEIRDPYK-GVRVWLGTFNTXXXXXXXXXXXAKRIRGDKAKLNF 766
            K E + N  A +E K KK        V+   YRG+RQRPWGK+AAEIRDP K G RVWLGTF T           A R+RG +A LNF
Sbjct:   87 KVEPTENFTA-MEEKPKKAIPVTETAVKAKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDIAAFRMRGSRALLNF 173          
BLAST of CN186042 vs. ExPASy Swiss-Prot
Match: EF100_ARATH (Ethylene-responsive transcription factor 1A OS=Arabidopsis thaliana GN=ERF1A PE=1 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 7.492e-12
Identity = 42/87 (48.28%), Postives = 47/87 (54.02%), Query Frame = -1
Query:  521 VKNEKAEDSSNKAARVEGKEKKTQRVRKNVYRGIRQRPWGKWAAEIRDPYK-GVRVWLGTFNTXXXXXXXXXXXAKRIRGDKAKLNF 778
            VK EK    S      +GK           YRG+RQRPWGK+AAEIRDP K G RVWLGTF T           A R+RG +A LNF
Sbjct:  128 VKKEKTSPVSAAVTAAKGKH----------YRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNF 204          
BLAST of CN186042 vs. ExPASy Swiss-Prot
Match: ERF80_ARATH (Ethylene-responsive transcription factor 9 OS=Arabidopsis thaliana GN=ERF9 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 9.785e-12
Identity = 36/70 (51.43%), Postives = 44/70 (62.86%), Query Frame = -1
Query:  521 GKEKKTQRVRKNV-YRGIRQRPWGKWAAEIRDPYKGVRVWLGTFNTXXXXXXXXXXXAKRIRGDKAKLNF 727
            GK      +RK V +RG+R+RPWG++AAEIRDP K  RVWLGTF+T           A+  RG KAK NF
Sbjct:   19 GKTMTMTTMRKEVHFRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTAEEAARAYDTAAREFRGSKAKTNF 88          
BLAST of CN186042 vs. ExPASy Swiss-Prot
Match: ERF81_ARATH (Ethylene-responsive transcription factor 12 OS=Arabidopsis thaliana GN=ERF12 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.669e-11
Identity = 34/64 (53.12%), Postives = 43/64 (67.19%), Query Frame = -1
Query:  521 TQRVRKNVYRGIRQRPWGKWAAEIRDPYKGVRVWLGTFNTXXXXXXXXXXXAKRIRGDKAKLNF 712
            T   R+  YRG+R+RPWG++AAEIRDP+K  RVWLGTF+T           A+ +RG KAK NF
Sbjct:    4 TTCAREVHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARFLRGIKAKTNF 67          
BLAST of CN186042 vs. ExPASy Swiss-Prot
Match: EF107_ARATH (Ethylene-responsive transcription factor ERF107 OS=Arabidopsis thaliana GN=ERF107 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.180e-11
Identity = 46/131 (35.11%), Postives = 66/131 (50.38%), Query Frame = -1
Query:  425 SHPKQPLKVKNEKAEDSSNKAA---RVEGKEKKTQRVRKNV-YRGIRQRPWGKWAAEIRDP-YKGVRVWLGTFNTXXXXXXXXXXXAKRIRGDKAKLNFXXXXXXXXXXXAKKRCMPSPELTQPRFETIGT 802
            S+ ++ L+++ E +  SS   +         KKT+R  +   YRG+R+RPWGK+AAEIRDP  KG R+WLGTF +           A ++RG KA LNF              R     ++ QP+  T  T
Sbjct:   65 SYVQEILQMEAESSSSSSTTTSPEVETVSNRKKTKRFEETRHYRGVRRRPWGKFAAEIRDPAKKGSRIWLGTFESDIDAARAYDYAAFKLRGRKAVLNFPLDAGKYDAPVNSCRKRRRTDVPQPQGTTTST 195          
BLAST of CN186042 vs. ExPASy Swiss-Prot
Match: CRF3_ARATH (Ethylene-responsive transcription factor CRF3 OS=Arabidopsis thaliana GN=CRF3 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.180e-11
Identity = 35/91 (38.46%), Postives = 52/91 (57.14%), Query Frame = -1
Query:  521 KQPLKVKNEKAEDSSNKAARVEGKEKKTQRVRKNVYRGIRQRPWGKWAAEIRDPYKGVRVWLGTFNTXXXXXXXXXXXAKRIRGDKAKLNF 793
            ++ L   +++ +  ++   R   K   + +++K  +RG+RQRPWGKWAAEIRDP +  R+WLGTF T           A R+RG  A  NF
Sbjct:   92 RKRLSSSSDETQSPASSRQRPNNKVSVSGQIKK--FRGVRQRPWGKWAAEIRDPEQRRRIWLGTFETAEEAAVVYDNAAIRLRGPDALTNF 180          
BLAST of CN186042 vs. ExPASy Swiss-Prot
Match: ERF5_NICSY (Ethylene-responsive transcription factor 5 OS=Nicotiana sylvestris GN=ERF5 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.847e-11
Identity = 38/74 (51.35%), Postives = 47/74 (63.51%), Query Frame = -1
Query:  521 KEKKTQRVR-----KNVYRGIRQRPWGKWAAEIRDP-YKGVRVWLGTFNTXXXXXXXXXXXAKRIRGDKAKLNF 724
            K++  Q+V      K  YRG+RQRPWGK+AAEIRDP  KG RVWLGTF+T           A ++RG KA +NF
Sbjct:  121 KQEVVQKVELAPTEKKHYRGVRQRPWGKFAAEIRDPNRKGTRVWLGTFDTAIEAAKAYDRAAYKLRGSKAIVNF 194          
The following BLAST results are available for this feature:
BLAST of CN186042 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
ERF99_ARATH4.392e-1247.56Ethylene-responsive transcription factor 13 OS=Ara... [more]
EF102_ARATH4.392e-1247.87Ethylene-responsive transcription factor 5 OS=Arab... [more]
DREB3_ARATH5.737e-1244.57Dehydration-responsive element-binding protein 3 O... [more]
EF101_ARATH7.492e-1250.00Ethylene-responsive transcription factor 2 OS=Arab... [more]
EF100_ARATH7.492e-1248.28Ethylene-responsive transcription factor 1A OS=Ara... [more]
ERF80_ARATH9.785e-1251.43Ethylene-responsive transcription factor 9 OS=Arab... [more]
ERF81_ARATH1.669e-1153.13Ethylene-responsive transcription factor 12 OS=Ara... [more]
EF107_ARATH2.180e-1135.11Ethylene-responsive transcription factor ERF107 OS... [more]
CRF3_ARATH2.180e-1138.46Ethylene-responsive transcription factor CRF3 OS=A... [more]
ERF5_NICSY2.847e-1151.35Ethylene-responsive transcription factor 5 OS=Nico... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0002E11_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002E11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186042 ID=CN186042; Name=CN186042; organism=Citrus sinensis; type=EST; length=811bp
TTATTAGTATCGAGTCATTAACAACATAAAACACAAATTAAAATAAACAA
AGCTCTTTAACAACATAAACACAAAATCAAAACTACATAAACAGCATTAA
ACACTATAACTCAATACACAGACCCACACGAACACACAGCACGGCCACAA
CTCAATTCGTTTATTATTATTTTTCCTAACACAAGAACTGATTGCTGTTC
AGCTGCTGAGTCGCCGCCACGTCATCAAGCATCCAAAAGTCCACCGAGTC
ATACCCACCAGCACCGTTTCCACTCGGCTGACTCATTAATGGCTCCAATC
CCAAAAACGATTCCAAGCTCGAAATTTGCTGGCTCAGCTCAAACTCGTCG
TCTACTGCCCTGGGTTGATAAAACTCATTCTGATACCCAAACCCCACCCA
CGGGGACGGCGCCGGAGCCGGTGGGGTTCCGATGGTTTCAAATCTCGGCT
GAGTCAACTCAGGGGATGGCATGCAGCGTTTCTTAGCTGGGGGTGGAGCT
ATTGGCGGCGGCGGCTGAGCGAAGTTGAGCTTGGCCTTGTCGCCGCGGAT
ACGCTTGGCGGCTTCATCATAAGCTCTTGCGGCTTCTTCGGCTGTGTTGA
AAGTGCCGAGCCAAACGCGGACGCCCTTGTAAGGGTCTCTAATTTCAGCT
GCCCATTTTCCCCACGGCCTCTGCCGTATTCCTCTGTACACGTTCTTGCG
AACTCGCTGAGTCTTCTTCTCCTTCCCCTCAACACGAGCAGCTTTATTGC
TTGAATCTTCAGCCTTCTCATTTTTCACTTTGAGAGGTTGCTTAGGGTGG
GATTTGCCATT
back to top