CN186042

Overview
NameCN186042
Unique NameCN186042
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length811
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN186042 vs. ExPASy Swiss-Prot
Match: ERF1_TOBAC (Ethylene-responsive transcription factor 1 OS=Nicotiana tabacum GN=ERF1 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.847e-11
Identity = 39/88 (44.32%), Postives = 50/88 (56.82%), Query Frame = -1
Query:  521 KVKNEKAEDSSNKAARVEGKEKKTQRVRKNVYRGIRQRPWGKWAAEIRDPYK-GVRVWLGTFNTXXXXXXXXXXXAKRIRGDKAKLNF 781
            +VK+E+ E+    +          +  R   YRG+R+RPWGK+AAEIRDP K G RVWLGT+ T           A R+RG KA LNF
Sbjct:   74 EVKSEQREEEIVVSPAETTAAPAAELPRGRHYRGVRRRPWGKFAAEIRDPAKNGARVWLGTYETDEEAAIAYDKAAYRMRGSKAHLNF 161          
BLAST of CN186042 vs. ExPASy Swiss-Prot
Match: EF105_ARATH (Ethylene-responsive transcription factor ERF105 OS=Arabidopsis thaliana GN=ERF105 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.847e-11
Identity = 35/57 (61.40%), Postives = 41/57 (71.93%), Query Frame = -1
Query:  521 YRGIRQRPWGKWAAEIRDP-YKGVRVWLGTFNTXXXXXXXXXXXAKRIRGDKAKLNF 688
            YRG+R+RPWGK+AAEIRDP  KGVRVWLGTF+T           A ++RG KA LNF
Sbjct:   72 YRGVRRRPWGKYAAEIRDPNKKGVRVWLGTFDTAMEAARGYDKAAFKLRGSKAILNF 128          
BLAST of CN186042 vs. ExPASy Swiss-Prot
Match: ERF42_ARATH (Ethylene-responsive transcription factor ERF042 OS=Arabidopsis thaliana GN=ERF042 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.718e-11
Identity = 35/79 (44.30%), Postives = 41/79 (51.90%), Query Frame = -1
Query:  521 DSSNKAARVEGKEKKTQRVRKNVYRGIRQRPWGKWAAEIRDPYKGVRVWLGTFNTXXXXXXXXXXXAKRIRGDKAKLNF 757
            DS         K+KK +   K VYRG R R WGKW +EIR+P K  R+WLGTF T           A  I+G  A LNF
Sbjct:    3 DSHGSDTECSSKKKKEKTKEKGVYRGARMRSWGKWVSEIREPRKKSRIWLGTFPTAEMAARAHDVAALSIKGSSAILNF 81          
BLAST of CN186042 vs. ExPASy Swiss-Prot
Match: ERF2_TOBAC (Ethylene-responsive transcription factor 2 OS=Nicotiana tabacum GN=ERF2 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.718e-11
Identity = 35/57 (61.40%), Postives = 39/57 (68.42%), Query Frame = -1
Query:  521 YRGIRQRPWGKWAAEIRDPYK-GVRVWLGTFNTXXXXXXXXXXXAKRIRGDKAKLNF 688
            YRG+RQRPWGK+AAEIRDP K G RVWLGT+ T           A R+RG KA LNF
Sbjct:   99 YRGVRQRPWGKFAAEIRDPAKNGARVWLGTYETAEEAALAYDKAAYRMRGSKALLNF 155          
BLAST of CN186042 vs. ExPASy Swiss-Prot
Match: ERF2_NICSY (Ethylene-responsive transcription factor 2 OS=Nicotiana sylvestris GN=ERF2 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.718e-11
Identity = 35/57 (61.40%), Postives = 39/57 (68.42%), Query Frame = -1
Query:  521 YRGIRQRPWGKWAAEIRDPYK-GVRVWLGTFNTXXXXXXXXXXXAKRIRGDKAKLNF 688
            YRG+RQRPWGK+AAEIRDP K G RVWLGT+ T           A R+RG KA LNF
Sbjct:  103 YRGVRQRPWGKFAAEIRDPAKNGARVWLGTYETAEEAALAYDKAAYRMRGSKALLNF 159          
BLAST of CN186042 vs. ExPASy Swiss-Prot
Match: PTI6_SOLLC (Pathogenesis-related genes transcriptional activator PTI6 OS=Solanum lycopersicum GN=PTI6 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.856e-11
Identity = 30/60 (50.00%), Postives = 40/60 (66.67%), Query Frame = -1
Query:  521 RKNVYRGIRQRPWGKWAAEIRDPYKGVRVWLGTFNTXXXXXXXXXXXAKRIRGDKAKLNF 700
            R+  +RG+RQRPWG+WAAEIRDP +G RVWLGT++T           A +++G  A  NF
Sbjct:   94 RRKKFRGVRQRPWGRWAAEIRDPTRGKRVWLGTYDTPEEAAVVYDKAAVKLKGPDAVTNF 153          
BLAST of CN186042 vs. ExPASy Swiss-Prot
Match: ERF83_ARATH (Ethylene-responsive transcription factor 7 OS=Arabidopsis thaliana GN=ERF7 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.856e-11
Identity = 32/61 (52.46%), Postives = 42/61 (68.85%), Query Frame = -1
Query:  521 VRKNVYRGIRQRPWGKWAAEIRDPYKGVRVWLGTFNTXXXXXXXXXXXAKRIRGDKAKLNF 703
            V++  YRG+R+RPWG++AAEIRDP K  RVWLGTF++           A+ +RG KAK NF
Sbjct:   22 VKEPRYRGVRKRPWGRFAAEIRDPLKKSRVWLGTFDSAVDAARAYDTAARNLRGPKAKTNF 82          
BLAST of CN186042 vs. ExPASy Swiss-Prot
Match: ERF76_ARATH (Ethylene-responsive transcription factor 11 OS=Arabidopsis thaliana GN=ERF11 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.856e-11
Identity = 36/70 (51.43%), Postives = 43/70 (61.43%), Query Frame = -1
Query:  521 KTQRVRKNV-----YRGIRQRPWGKWAAEIRDPYKGVRVWLGTFNTXXXXXXXXXXXAKRIRGDKAKLNF 715
            KT  V+ N      YRG+R+RPWG++AAEIRDP+K  RVWLGTF+T           A   RG KAK NF
Sbjct:    6 KTAAVKTNEGNGVRYRGVRKRPWGRYAAEIRDPFKKSRVWLGTFDTPEEAARAYDKRAIEFRGAKAKTNF 75          
BLAST of CN186042 vs. ExPASy Swiss-Prot
Match: ERF5_TOBAC (Ethylene-responsive transcription factor 5 OS=Nicotiana tabacum GN=ERF5 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.856e-11
Identity = 35/60 (58.33%), Postives = 41/60 (68.33%), Query Frame = -1
Query:  521 KNVYRGIRQRPWGKWAAEIRDP-YKGVRVWLGTFNTXXXXXXXXXXXAKRIRGDKAKLNF 697
            K  YRG+RQRPWGK+AAEIRDP  KG RVWLGTF+T           A ++RG KA +NF
Sbjct:  142 KKHYRGVRQRPWGKFAAEIRDPNRKGTRVWLGTFDTAIEAAKAYDRAAFKLRGSKAIVNF 201          
BLAST of CN186042 vs. ExPASy Swiss-Prot
Match: ERF56_ARATH (Ethylene-responsive transcription factor ERF056 OS=Arabidopsis thaliana GN=ERF056 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.856e-11
Identity = 33/59 (55.93%), Postives = 38/59 (64.41%), Query Frame = -1
Query:  521 KNVYRGIRQRPWGKWAAEIRDPYKGVRVWLGTFNTXXXXXXXXXXXAKRIRGDKAKLNF 697
            KN+YRG+RQR WGKW AEIR P    R+WLGTF T           A ++RGD AKLNF
Sbjct:   68 KNLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFETAEKAALAYDQAAFQLRGDIAKLNF 126          
The following BLAST results are available for this feature:
BLAST of CN186042 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
ERF1_TOBAC2.847e-1144.32Ethylene-responsive transcription factor 1 OS=Nico... [more]
EF105_ARATH2.847e-1161.40Ethylene-responsive transcription factor ERF105 OS... [more]
ERF42_ARATH3.718e-1144.30Ethylene-responsive transcription factor ERF042 OS... [more]
ERF2_TOBAC3.718e-1161.40Ethylene-responsive transcription factor 2 OS=Nico... [more]
ERF2_NICSY3.718e-1161.40Ethylene-responsive transcription factor 2 OS=Nico... [more]
PTI6_SOLLC4.856e-1150.00Pathogenesis-related genes transcriptional activat... [more]
ERF83_ARATH4.856e-1152.46Ethylene-responsive transcription factor 7 OS=Arab... [more]
ERF76_ARATH4.856e-1151.43Ethylene-responsive transcription factor 11 OS=Ara... [more]
ERF5_TOBAC4.856e-1158.33Ethylene-responsive transcription factor 5 OS=Nico... [more]
ERF56_ARATH4.856e-1155.93Ethylene-responsive transcription factor ERF056 OS... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002E11_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002E11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186042 ID=CN186042; Name=CN186042; organism=Citrus sinensis; type=EST; length=811bp
TTATTAGTATCGAGTCATTAACAACATAAAACACAAATTAAAATAAACAA
AGCTCTTTAACAACATAAACACAAAATCAAAACTACATAAACAGCATTAA
ACACTATAACTCAATACACAGACCCACACGAACACACAGCACGGCCACAA
CTCAATTCGTTTATTATTATTTTTCCTAACACAAGAACTGATTGCTGTTC
AGCTGCTGAGTCGCCGCCACGTCATCAAGCATCCAAAAGTCCACCGAGTC
ATACCCACCAGCACCGTTTCCACTCGGCTGACTCATTAATGGCTCCAATC
CCAAAAACGATTCCAAGCTCGAAATTTGCTGGCTCAGCTCAAACTCGTCG
TCTACTGCCCTGGGTTGATAAAACTCATTCTGATACCCAAACCCCACCCA
CGGGGACGGCGCCGGAGCCGGTGGGGTTCCGATGGTTTCAAATCTCGGCT
GAGTCAACTCAGGGGATGGCATGCAGCGTTTCTTAGCTGGGGGTGGAGCT
ATTGGCGGCGGCGGCTGAGCGAAGTTGAGCTTGGCCTTGTCGCCGCGGAT
ACGCTTGGCGGCTTCATCATAAGCTCTTGCGGCTTCTTCGGCTGTGTTGA
AAGTGCCGAGCCAAACGCGGACGCCCTTGTAAGGGTCTCTAATTTCAGCT
GCCCATTTTCCCCACGGCCTCTGCCGTATTCCTCTGTACACGTTCTTGCG
AACTCGCTGAGTCTTCTTCTCCTTCCCCTCAACACGAGCAGCTTTATTGC
TTGAATCTTCAGCCTTCTCATTTTTCACTTTGAGAGGTTGCTTAGGGTGG
GATTTGCCATT
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