CN186042

Overview
NameCN186042
Unique NameCN186042
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length811
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN186042 vs. ExPASy Swiss-Prot
Match: EF106_ARATH (Ethylene-responsive transcription factor ERF106 OS=Arabidopsis thaliana GN=ERF106 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.856e-11
Identity = 38/84 (45.24%), Postives = 50/84 (59.52%), Query Frame = -1
Query:  521 DSSNKAARVEGKEKKTQRVRKNV----YRGIRQRPWGKWAAEIRDP-YKGVRVWLGTFNTXXXXXXXXXXXAKRIRGDKAKLNF 757
            +SS+     +   KK +R  + V    YRG+R+RPWGK+AAEIRDP  KG R+WLGTF +           A ++RG KA LNF
Sbjct:   83 NSSSSTYETDQSVKKAERFEEEVDARHYRGVRRRPWGKFAAEIRDPAKKGSRIWLGTFESDVDAARAYDCAAFKLRGRKAVLNF 166          
BLAST of CN186042 vs. ExPASy Swiss-Prot
Match: DRE2G_ARATH (Dehydration-responsive element-binding protein 2G OS=Arabidopsis thaliana GN=DREB2G PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.856e-11
Identity = 30/55 (54.55%), Postives = 38/55 (69.09%), Query Frame = -1
Query:  524 YRGIRQRPWGKWAAEIRDPYKGVRVWLGTFNTXXXXXXXXXXXAKRIRGDKAKLN 688
            +RG+RQR WGKW AEIR+P +G R+WLGTFNT           AK++ G +AKLN
Sbjct:   34 FRGVRQRTWGKWVAEIREPNRGTRLWLGTFNTSVEAAMAYDEAAKKLYGHEAKLN 88          
BLAST of CN186042 vs. ExPASy Swiss-Prot
Match: CRF6_ARATH (Ethylene-responsive transcription factor CRF6 OS=Arabidopsis thaliana GN=CRF6 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.856e-11
Identity = 40/92 (43.48%), Postives = 51/92 (55.43%), Query Frame = -1
Query:  521 KAEDSSNKAARVEGKEKKTQRV----------RKNVYRGIRQRPWGKWAAEIRDPYKGVRVWLGTFNTXXXXXXXXXXXAKRIRGDKAKLNF 766
            + E SS+ AAR +GK K+ + V          +   YRG+RQRPWGK+AAEIRDP    R+WLGTF T           A  ++G KA  NF
Sbjct:   70 QGESSSSTAAR-KGKHKEEESVVVEDDVSTSVKPKKYRGVRQRPWGKFAAEIRDPSSRTRIWLGTFVTAEEAAIAYDRAAIHLKGPKALTNF 160          
BLAST of CN186042 vs. ExPASy Swiss-Prot
Match: CRF4_ARATH (Ethylene-responsive transcription factor CRF4 OS=Arabidopsis thaliana GN=CRF4 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.856e-11
Identity = 38/89 (42.70%), Postives = 48/89 (53.93%), Query Frame = -1
Query:  521 PLKVKNEKAEDSSNKAARVEGKEKKTQRVRKNVYRGIRQRPWGKWAAEIRDPYKGVRVWLGTFNTXXXXXXXXXXXAKRIRGDKAKLNF 787
            P K +     DS+ +   V G+ +K        YRG+RQRPWGKWAAEIRDP +  R+WLGTF T           A ++RG  A  NF
Sbjct:   91 PTKDRKRINVDSTVQKPSVSGQNQKK-------YRGVRQRPWGKWAAEIRDPEQRRRIWLGTFATAEEAAIVYDNAAIKLRGPDALTNF 172          
BLAST of CN186042 vs. ExPASy Swiss-Prot
Match: ERF79_ARATH (Ethylene-responsive transcription factor 8 OS=Arabidopsis thaliana GN=ERF8 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.342e-11
Identity = 32/56 (57.14%), Postives = 38/56 (67.86%), Query Frame = -1
Query:  521 YRGIRQRPWGKWAAEIRDPYKGVRVWLGTFNTXXXXXXXXXXXAKRIRGDKAKLNF 688
            YRG+R+RPWG++AAEIRDP K  RVWLGTF+T           A+  RG KAK NF
Sbjct:   31 YRGVRKRPWGRYAAEIRDPVKKTRVWLGTFDTAQQAARAYDAAARDFRGVKAKTNF 86          
BLAST of CN186042 vs. ExPASy Swiss-Prot
Match: ERF3_TOBAC (Ethylene-responsive transcription factor 3 OS=Nicotiana tabacum GN=ERF3 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.342e-11
Identity = 33/73 (45.21%), Postives = 47/73 (64.38%), Query Frame = -1
Query:  521 ARVEGKEKKTQRVRKNVYRGIRQRPWGKWAAEIRDPYKGVRVWLGTFNTXXXXXXXXXXXAKRIRGDKAKLNF 739
            A V G+   +   ++  +RG+R+RPWG++AAEIRDP+K  RVWLGTF++           A+ +RG KAK NF
Sbjct:   11 APVTGEPNGSGGSKEIRFRGVRKRPWGRFAAEIRDPWKKTRVWLGTFDSAEDAARAYDAAARALRGPKAKTNF 83          
BLAST of CN186042 vs. ExPASy Swiss-Prot
Match: ERF78_ARATH (Ethylene-responsive transcription factor 4 OS=Arabidopsis thaliana GN=ERF4 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.284e-11
Identity = 32/56 (57.14%), Postives = 38/56 (67.86%), Query Frame = -1
Query:  521 YRGIRQRPWGKWAAEIRDPYKGVRVWLGTFNTXXXXXXXXXXXAKRIRGDKAKLNF 688
            YRG+R+RPWG++AAEIRDP K  RVWLGTF+T           A+  RG KAK NF
Sbjct:   25 YRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTAEEAARAYDTAARDFRGAKAKTNF 80          
The following BLAST results are available for this feature:
BLAST of CN186042 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
EF106_ARATH4.856e-1145.24Ethylene-responsive transcription factor ERF106 OS... [more]
DRE2G_ARATH4.856e-1154.55Dehydration-responsive element-binding protein 2G ... [more]
CRF6_ARATH4.856e-1143.48Ethylene-responsive transcription factor CRF6 OS=A... [more]
CRF4_ARATH4.856e-1142.70Ethylene-responsive transcription factor CRF4 OS=A... [more]
ERF79_ARATH6.342e-1157.14Ethylene-responsive transcription factor 8 OS=Arab... [more]
ERF3_TOBAC6.342e-1145.21Ethylene-responsive transcription factor 3 OS=Nico... [more]
ERF78_ARATH8.284e-1157.14Ethylene-responsive transcription factor 4 OS=Arab... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0002E11_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002E11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186042 ID=CN186042; Name=CN186042; organism=Citrus sinensis; type=EST; length=811bp
TTATTAGTATCGAGTCATTAACAACATAAAACACAAATTAAAATAAACAA
AGCTCTTTAACAACATAAACACAAAATCAAAACTACATAAACAGCATTAA
ACACTATAACTCAATACACAGACCCACACGAACACACAGCACGGCCACAA
CTCAATTCGTTTATTATTATTTTTCCTAACACAAGAACTGATTGCTGTTC
AGCTGCTGAGTCGCCGCCACGTCATCAAGCATCCAAAAGTCCACCGAGTC
ATACCCACCAGCACCGTTTCCACTCGGCTGACTCATTAATGGCTCCAATC
CCAAAAACGATTCCAAGCTCGAAATTTGCTGGCTCAGCTCAAACTCGTCG
TCTACTGCCCTGGGTTGATAAAACTCATTCTGATACCCAAACCCCACCCA
CGGGGACGGCGCCGGAGCCGGTGGGGTTCCGATGGTTTCAAATCTCGGCT
GAGTCAACTCAGGGGATGGCATGCAGCGTTTCTTAGCTGGGGGTGGAGCT
ATTGGCGGCGGCGGCTGAGCGAAGTTGAGCTTGGCCTTGTCGCCGCGGAT
ACGCTTGGCGGCTTCATCATAAGCTCTTGCGGCTTCTTCGGCTGTGTTGA
AAGTGCCGAGCCAAACGCGGACGCCCTTGTAAGGGTCTCTAATTTCAGCT
GCCCATTTTCCCCACGGCCTCTGCCGTATTCCTCTGTACACGTTCTTGCG
AACTCGCTGAGTCTTCTTCTCCTTCCCCTCAACACGAGCAGCTTTATTGC
TTGAATCTTCAGCCTTCTCATTTTTCACTTTGAGAGGTTGCTTAGGGTGG
GATTTGCCATT
back to top