CN186040

Overview
NameCN186040
Unique NameCN186040
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length695
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN186040 vs. ExPASy Swiss-Prot
Match: ZDS_SYNY3 (Zeta-carotene desaturase OS=Synechocystis sp. (strain PCC 6803) GN=crtQ PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.011e-24
Identity = 64/163 (39.26%), Postives = 90/163 (55.21%), Query Frame = 1
Query:  229 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKVAAWKDGDGNWYETGLHIFFGAYPNIQNLFGELGINDRLQWKEHSMIFAMPNKPGEFSRFDFPEVLPAPLNGILAILRNNEMLTWPEKVKFAIGLLPAII--------GGQAYVEAQDGLTVQEW 693
            ++V I GAGLAG++TA  L DAGH+  L EAR  +GGKV +W DGDGN  E GLH+FFG Y N+ NL  ++G    L+ KEH+  F   N+ G     DF  +  AP NG+ A    +++ T  +K+  +I L  + I        G    +   D ++  EW
Sbjct:    1 MRVAIVGAGLAGMATAVELVDAGHEVELYEARSFIGGKVGSWVDGDGNHIEMGLHVFFGCYYNLFNLMEKVGAKQNLRLKEHTHTFV--NQGGRIGELDFRFLTGAPFNGLKAFFTTSQLDT-KDKIANSIALATSPIVRGLVDFDGAMKTIRDLDRISFAEW 160          
BLAST of CN186040 vs. ExPASy Swiss-Prot
Match: ZDS_MAIZE (Zeta-carotene desaturase, chloroplastic/chromoplastic OS=Zea mays GN=ZDS1 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.235e-22
Identity = 60/133 (45.11%), Postives = 81/133 (60.90%), Query Frame = 1
Query:  229 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKVAAWKDGDGNWYETGLHIFFGAYPNIQNLFGELGINDRLQWKEHSMIFAMPNKPGEFSRFDFPEVLPAPLNGILAILRNNEMLTWPEKVKFAIGL 627
            LKV I GAGLAG+STA  L D GH+  L E+R  +GGKV ++ D  GN  E GLH+FFG Y N+  L  ++G ++ L  KEH+  F   NK G     DF   + APL+GI A LR N++  + +K + A+ L
Sbjct:   65 LKVAIIGAGLAGMSTAVELLDQGHEVDLYESRPFIGGKVGSFVDRQGNHIEMGLHVFFGCYSNLFRLMKKVGADNNLLVKEHTHTFV--NKGGTIGELDFRFPVGAPLHGIQAFLRTNQLKVY-DKARNAVAL 194          
BLAST of CN186040 vs. ExPASy Swiss-Prot
Match: ZDS_TARER (Zeta-carotene desaturase, chloroplastic/chromoplastic OS=Tagetes erecta PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.107e-22
Identity = 62/162 (38.27%), Postives = 88/162 (54.32%), Query Frame = 1
Query:  229 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKVAAWKDGDGNWYETGLHIFFGAYPNIQNLFGELGINDRLQWKEHSMIFAMPNKPGEFSRFDFPEVLPAPLNGILAILRNNEMLTWPE-KVKFAIGLLPAI------IGGQAYVEAQDGLTVQEW 693
            LKV I GAGLAG+STA  L D GH+  + E+R  +GGKV ++ D  GN  E GLH+FFG Y N+  L  ++G    L  K+H+  F   N+ GE    DF   + APL+GI A L  N++ T+ + +   A+ L P +       G    +   D ++  EW
Sbjct:   83 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRTFIGGKVGSFVDKQGNHIEMGLHVFFGCYNNLFRLLKKVGAEKNLLVKDHTHTFV--NRGGELGELDFRFPVGAPLHGINAFLTTNQLKTYDKARNAVALALSPVVRALVDPDGAMTQIRNLDNISFSEW 242          
BLAST of CN186040 vs. ExPASy Swiss-Prot
Match: ZDS_CAPAN (Zeta-carotene desaturase, chloroplastic/chromoplastic OS=Capsicum annuum GN=ZDS PE=1 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.594e-22
Identity = 60/133 (45.11%), Postives = 80/133 (60.15%), Query Frame = 1
Query:  229 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKVAAWKDGDGNWYETGLHIFFGAYPNIQNLFGELGINDRLQWKEHSMIFAMPNKPGEFSRFDFPEVLPAPLNGILAILRNNEMLTWPEKVKFAIGL 627
            LKV I GAGLAG+STA  L D GH+  + E+R  +GGKV ++ D  GN  E GLH+FFG Y N+  L  ++G    L  KEH+  F   NK GE    DF   + APL+GI A L  N++ T+ +K + A+ L
Sbjct:   80 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRTFIGGKVGSFVDKRGNHIEMGLHVFFGCYNNLFRLMKKVGAEKNLLVKEHTHTFV--NKGGEIGELDFRFPVGAPLHGINAFLSTNQLKTY-DKARNAVAL 209          
BLAST of CN186040 vs. ExPASy Swiss-Prot
Match: ZDS_SOLLC (Zeta-carotene desaturase, chloroplastic/chromoplastic OS=Solanum lycopersicum GN=ZDS PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 8.007e-22
Identity = 68/193 (35.23%), Postives = 97/193 (50.26%), Query Frame = 1
Query:  142 RPDIDNTSNFLEAAYLSSSFRTSPRPSK--PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKVAAWKDGDGNWYETGLHIFFGAYPNIQNLFGELGINDRLQWKEHSMIFAMPNKPGEFSRFDFPEVLPAPLNGILAILRNNEMLTWPE-KVKFAIGLLPAI------IGGQAYVEAQDGLTVQEW 693
            R D+D+  + +        F   P   +   LKV I GAGLAG+STA  L D GH+  + E+R  +GGKV ++ D  GN  E GLH+FFG Y N+  L  ++G    L  KEH+  F   NK GE    DF   + APL+GI A L  N++  + + +   A+ L P +       G    +   D ++  EW
Sbjct:   49 RADLDSMVSDMSTNAPKGLFPPEPEHYRGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRTFIGGKVGSFVDRRGNHIEMGLHVFFGCYNNLFRLLKKVGAEKNLLVKEHTHTFV--NKGGEIGELDFRFPVGAPLHGINAFLSTNQLKIYDKARNAVALALSPVVRALVDPDGALQQIRDLDNVSFSEW 239          
BLAST of CN186040 vs. ExPASy Swiss-Prot
Match: ZDS_NARPS (Zeta-carotene desaturase, chloroplastic/chromoplastic OS=Narcissus pseudonarcissus GN=ZDS1 PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.046e-21
Identity = 62/163 (38.04%), Postives = 92/163 (56.44%), Query Frame = 1
Query:  229 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKVAAWKDGDGNWYETGLHIFFGAYPNIQNLFGELGINDRLQWKEHSMIFAMPNKPGEFSRFDFPEVLPAPLNGILAILRNNEMLTWPEKVKFAIGL-----LPAII---GGQAYVEAQDGLTVQEW 693
            LKV I GAGLAG+STA  L D GH+  + E+R  +GGKV ++ D  GN  E GLH+FFG Y N+  L  ++G ++ L  K+H+  F   N+ GE    DF   + APL+GI A L  N++  + +K + A+ L     + A+I   G    +   D ++  +W
Sbjct:   65 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRQFIGGKVGSFVDKRGNHIEMGLHVFFGCYNNLFRLMKKVGADENLLVKDHTHTFV--NRGGEIGELDFRLPMGAPLHGIRAFLTTNQLKPY-DKARNAVALALSPVVRALIDPNGAMQDIRNLDNISFSDW 224          
BLAST of CN186040 vs. ExPASy Swiss-Prot
Match: ZDS_ANASP (Zeta-carotene desaturase OS=Anabaena sp. (strain PCC 7120) GN=crtQ PE=3 SV=2)

HSP 1 Score: 102.834 bits (255), Expect = 1.784e-21
Identity = 58/133 (43.61%), Postives = 79/133 (59.40%), Query Frame = 1
Query:  229 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKVAAWKDGDGNWYETGLHIFFGAYPNIQNLFGELGINDRLQWKEHSMIFAMPNKPGEFSRFDFPEVLPAPLNGILAILRNNEMLTWPEKVKFAIGL 627
            ++V I GAGLAGL+TA  LADAG +  + E+R  +GGKV +W DGDGN  E GLH+FFG Y  +  L  ++G    L+ KEH+  F   NK G     DF     AP NG+ A    ++ L+  +K++ AI L
Sbjct:    1 MRVAIVGAGLAGLATAIDLADAGCEVQIFESRPFVGGKVGSWIDGDGNHVEMGLHVFFGCYYQLFELMNKVGAFSHLRLKEHTHTFV--NKGGRTGALDFRFFTGAPFNGLKAFFTTSQ-LSLQDKLQNAIAL 130          
BLAST of CN186040 vs. ExPASy Swiss-Prot
Match: ZDS_ARATH (Zeta-carotene desaturase, chloroplastic/chromoplastic OS=Arabidopsis thaliana GN=ZDS1 PE=2 SV=3)

HSP 1 Score: 99.3673 bits (246), Expect = 1.972e-20
Identity = 64/195 (32.82%), Postives = 96/195 (49.23%), Query Frame = 1
Query:  136 YPRPDIDNTSNFLEAAYLSSSFRTSPRPSK--PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKVAAWKDGDGNWYETGLHIFFGAYPNIQNLFGELGINDRLQWKEHSMIFAMPNKPGEFSRFDFPEVLPAPLNGILAILRNNEMLTWPE-KVKFAIGLLPAI------IGGQAYVEAQDGLTVQEW 693
            Y    +D+  + +        F   P P K   LKV I GAGLAG+STA  L D GH+  + ++R  +GGKV ++ D  GN  E GLH+FFG Y N+  L  ++G    L  K+H+  F   NK G     DF   + AP++GI A L  N++  + + +   A+ L P +       G    +   D ++  +W
Sbjct:   24 YVNSSLDSDVSDMSVNAPKGLFPPEPVPYKGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYDSRTFIGGKVGSFVDRRGNHIEMGLHVFFGCYNNLFRLMKKVGAEKNLLVKDHTHTFI--NKDGTIGELDFRFPVGAPIHGIRAFLVTNQLKPYDKLRNSLALALSPVVKALVDPDGAMRDIRNLDSISFSDW 216          
The following BLAST results are available for this feature:
BLAST of CN186040 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
ZDS_SYNY31.011e-2439.26Zeta-carotene desaturase OS=Synechocystis sp. (str... [more]
ZDS_MAIZE1.235e-2245.11Zeta-carotene desaturase, chloroplastic/chromoplas... [more]
ZDS_TARER2.107e-2238.27Zeta-carotene desaturase, chloroplastic/chromoplas... [more]
ZDS_CAPAN3.594e-2245.11Zeta-carotene desaturase, chloroplastic/chromoplas... [more]
ZDS_SOLLC8.007e-2235.23Zeta-carotene desaturase, chloroplastic/chromoplas... [more]
ZDS_NARPS1.046e-2138.04Zeta-carotene desaturase, chloroplastic/chromoplas... [more]
ZDS_ANASP1.784e-2143.61Zeta-carotene desaturase OS=Anabaena sp. (strain P... [more]
ZDS_ARATH1.972e-2032.82Zeta-carotene desaturase, chloroplastic/chromoplas... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002E09_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002E09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186040 ID=CN186040; Name=CN186040; organism=Citrus sinensis; type=EST; length=695bp
AGGAGCGTTTCTGAAAGTGCTTTCAACTTGCGATATGGTTTCCGAGATAG
TGAACCGATGGGTCAGAGCCTGAAAATTCGAGTTAAAACGGGGACAAGGA
AGGGTTTCTGTCCTTCGAAGGTGGTTTGTGTGGACTACCCAAGACCAGAT
ATTGATAATACATCTAATTTCTTGGAAGCTGCTTACTTGTCTTCGTCATT
TCGTACTTCTCCTCGTCCTTCTAAGCCGTTGAAAGTTGTAATTGCTGGTG
CAGGTTTGGCTGGTTTATCAACTGCAAAATATTTGGCAGATGCAGGCCAC
AAGCCTTTGTTACTGGAAGCAAGAGATGTTCTAGGTGGAAAGGTAGCTGC
CTGGAAAGATGGGGACGGGAACTGGTATGAGACAGGCCTTCATATTTTCT
TCGGGGCTTACCCAAATATACAGAACCTGTTTGGAGAACTTGGTATTAAT
GATCGGTTGCAGTGGAAGGAGCACTCTATGATTTTTGCAATGCCAAACAA
GCCCGGAGAATTCAGCCGATTTGATTTTCCTGAAGTTCTTCCGGCTCCGC
TAAATGGGATATTGGCCATTTTAAGGAATAATGAAATGCTGACTTGGCCG
GAGAAAGTGAAGTTTGCAATTGGACTGCTTCCAGCAATAATTGGCGGACA
GGCATATGTTGAAGCTCAAGATGGTTTAACTGTTCAGGAGTGGAT
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