CN186028

Overview
NameCN186028
Unique NameCN186028
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length772
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig242 contig Csv1_Contig242:103..874. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN186028 vs. ExPASy Swiss-Prot
Match: RL10L_HUMAN (60S ribosomal protein L10-like OS=Homo sapiens GN=RPL10L PE=1 SV=3)

HSP 1 Score: 264.618 bits (675), Expect = 4.230e-70
Identity = 128/189 (67.72%), Postives = 149/189 (78.84%), Query Frame = -2
Query:  205 PKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPL 771
            PKSRFCRGVPD KIRI+D+G KK  VDEFP   H+VS E E +SSEALEAARI  NKYM K  G+D FH+RVR+HPFHV+RINKMLSCAGADRLQTGMRGAFGKPQGT ARV IGQV++S+R K  N  H  EALRRAKFKFPGRQKI +S+KWGFTKF+  ++    ++  ++PDG   K +  HGPL
Sbjct:   18 PKSRFCRGVPDAKIRIFDLGRKKAKVDEFPLGGHMVSDEYEQLSSEALEAARICANKYMVKSCGRDGFHMRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVHIGQVIMSIRTKLQNEEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADEFEDMVAKKCLIPDGCGVKYVPSHGPL 206          
BLAST of CN186028 vs. ExPASy Swiss-Prot
Match: RL10B_SCHPO (60S ribosomal protein L10-B OS=Schizosaccharomyces pombe GN=rpl10b PE=2 SV=1)

HSP 1 Score: 259.61 bits (662), Expect = 1.361e-68
Identity = 125/192 (65.10%), Postives = 152/192 (79.17%), Query Frame = -2
Query:  196 PKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPLAQR 771
            PKSR+ R VPD KIRI+D+G K+ GVDEFP C+HLVS E E ++SEALEAARI  NKY+ K  GKD+FHLRVR HPFHV+RINKMLSCAGADRLQTGMR AFGKP G  ARV IGQVL+SVR KDS+   A EALRR ++KFPG+Q+IIVS+KWGF++++R +Y+  +S   I+PDG  AK L   G L ++
Sbjct:   18 PKSRYNRAVPDSKIRIFDLGRKRAGVDEFPLCIHLVSNEYEQITSEALEAARICANKYLVKIGGKDSFHLRVRAHPFHVVRINKMLSCAGADRLQTGMRHAFGKPNGLVARVNIGQVLMSVRTKDSSRATAIEALRRCQYKFPGQQRIIVSKKWGFSQYARDEYIEKRSRGEIIPDGCYAKFLNKRGSLQEK 209          
BLAST of CN186028 vs. ExPASy Swiss-Prot
Match: RL10A_SCHPO (60S ribosomal protein L10-A OS=Schizosaccharomyces pombe GN=rpl10a PE=2 SV=2)

HSP 1 Score: 259.225 bits (661), Expect = 1.777e-68
Identity = 124/192 (64.58%), Postives = 152/192 (79.17%), Query Frame = -2
Query:  196 PKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPLAQR 771
            PKSR+ R VPD KIRI+D+G K+ GVDEFP C+HLVS E E ++SEALEAARI  NKY+ K  GKD+FHLRVR HPFHV+RINKMLSCAGADRLQTGMR AFGKP G  ARV IGQ+L+SVR KDS+   A EALRR ++KFPG+Q+IIVS+KWGF++++R +Y+  +S   I+PDG  AK L   G L ++
Sbjct:   18 PKSRYNRAVPDSKIRIFDLGRKRAGVDEFPLCIHLVSNEYEQITSEALEAARICANKYLVKIGGKDSFHLRVRAHPFHVVRINKMLSCAGADRLQTGMRHAFGKPNGLVARVNIGQILMSVRTKDSSRATAIEALRRCQYKFPGQQRIIVSKKWGFSQYARDEYIEKRSRGEIIPDGCYAKFLNKRGSLQEK 209          
BLAST of CN186028 vs. ExPASy Swiss-Prot
Match: RL10_YEAST (60S ribosomal protein L10 OS=Saccharomyces cerevisiae GN=RPL10 PE=1 SV=1)

HSP 1 Score: 251.906 bits (642), Expect = 2.837e-66
Identity = 125/189 (66.14%), Postives = 142/189 (75.13%), Query Frame = -2
Query:  205 PKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPL 771
            PKSR+ R VPD KIRIYD+G KK  VDEFP CVHLVS E E +SSEALEAARI  NKYM   +G+DAFHLRVRVHPFHVLRINKMLSCAGADRLQ GMRGA+GKP G  ARV IGQ++ SVR KDSN     E LRRA++KFPG+QKII+S+KWGFT   R +YL+ +    +  DG   K L   G L
Sbjct:   18 PKSRYNRAVPDSKIRIYDLGKKKATVDEFPLCVHLVSNELEQLSSEALEAARICANKYMTTVSGRDAFHLRVRVHPFHVLRINKMLSCAGADRLQQGMRGAWGKPHGLAARVDIGQIIFSVRTKDSNKDVVVEGLRRARYKFPGQQKIILSKKWGFTNLDRPEYLKKREAGEVKDDGAFVKFLSKKGSL 206          
BLAST of CN186028 vs. ExPASy Swiss-Prot
Match: RL10_EUGGR (60S ribosomal protein L10 OS=Euglena gracilis GN=RPL10 PE=2 SV=1)

HSP 1 Score: 237.269 bits (604), Expect = 7.232e-62
Identity = 117/197 (59.39%), Postives = 140/197 (71.07%), Query Frame = -2
Query:  181 PKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPLAQRQPGRA 771
            PKSR+CRGVP+ KIRIYD GM+K   D FP   HL+S E+E + SEALEAARI  NKYM K AGK+A+H+RVRVHPFHV RINKMLSCAGADRLQ GMRGAFGKP G  ARV IGQ L+S+R K  +      AL+RA +KF GRQ I  S  WGFT+    +Y++WK E +   DGV+ K+L   G L + +  RA
Sbjct:   18 PKSRYCRGVPEAKIRIYDCGMRKLNADTFPLTYHLISMEREQIGSEALEAARINANKYMIKNAGKEAYHIRVRVHPFHVCRINKMLSCAGADRLQQGMRGAFGKPNGLAARVRIGQPLMSIRVKPQHEAVVVAALKRASYKFAGRQVIAKSTMWGFTEIRSENYVKWKEEGKFRVDGVSTKILRNRGRLHRAKRVRA 214          
BLAST of CN186028 vs. ExPASy Swiss-Prot
Match: RL10_ENCCU (60S ribosomal protein L10 OS=Encephalitozoon cuniculi GN=RPL10 PE=1 SV=1)

HSP 1 Score: 222.246 bits (565), Expect = 2.407e-57
Identity = 113/177 (63.84%), Postives = 134/177 (75.71%), Query Frame = -2
Query:  241 PKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDG 771
            PKSRF RGVPD KI+I+D+G +K GV EFP  V+ +S E+EN+S+EALEAARI  NKYM K+AGKD FHLR+RV+PFHVLRINKMLSCAGADRLQTGMRG+FGKP G  ARV   Q +LS+R K+S    A EALRRAK KFPG QKI VS K+GFT     ++ +     RI+  G
Sbjct:   18 PKSRFNRGVPDSKIQIFDLGRRKAGVLEFPLLVNCISNERENLSAEALEAARICANKYMVKHAGKDNFHLRIRVYPFHVLRINKMLSCAGADRLQTGMRGSFGKPYGRAARVVFNQPILSIRTKESFRDAAVEALRRAKNKFPGHQKIQVSSKFGFTNMFSDEFNKLNESGRIILRG 194          
BLAST of CN186028 vs. ExPASy Swiss-Prot
Match: RL10_METKA (50S ribosomal protein L10e OS=Methanopyrus kandleri GN=rpl10e PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 3.501e-32
Identity = 73/151 (48.34%), Postives = 100/151 (66.23%), Query Frame = -2
Query:  316 KSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSR 768
            +  + +GVPDPKI+ +D+G       +F   V LV+ E+  V+  ALEAAR+A N+Y+ K  G+  +HL++RV+P HVLR N + + AGADR+Q GMR AFGKP GT ARV  GQ +++VR    N  HA+EALRRA  KFP    I+V +
Sbjct:   19 RREYIKGVPDPKIQQFDMG---NPAGDFDVEVSLVARERAQVTHNALEAARVAANRYLTKTVGRQNYHLKIRVYPHHVLRENPLATGAGADRVQEGMRLAFGKPIGTAARVREGQRVVTVRIDPENFEHAKEALRRAGMKFPFPFTIVVDK 166          
BLAST of CN186028 vs. ExPASy Swiss-Prot
Match: RL10_AERPE (50S ribosomal protein L10e OS=Aeropyrum pernix GN=rpl10e PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 4.005e-28
Identity = 67/149 (44.97%), Postives = 94/149 (63.09%), Query Frame = -2
Query:  322 KSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIV 768
            +  +  GVP PKI  +++G ++  ++++     LV  E   +   ALEAARIA NKY+A   G   F+ R+RV+P HV+R NKM++ AGADRLQ GMR AFGKP GT ARV  G V+L V  +  +  + +EALRR   KFP   +I++
Sbjct:   19 RREYIHGVPPPKITRFEMGNREM-MEKWEIKGELVMLEAGQIRHNALEAARIAVNKYLATTIGDKNFYFRIRVYPHHVIRENKMMAFAGADRLQDGMRQAFGKPVGTAARVYPGTVVLEVWARKGDEENVKEALRRGASKFPLPSRIVI 166          
BLAST of CN186028 vs. ExPASy Swiss-Prot
Match: RL10_HYPBU (50S ribosomal protein L10e OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.522e-27
Identity = 68/150 (45.33%), Postives = 93/150 (62.00%), Query Frame = -2
Query:  325 KSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRR--AKFKFPGRQKII 768
            +  +  GVP PKI+ + +G       ++ + V +   E+  +   ALEAAR+A +KY++   G   +  RVRV+P HVLR NKM++ AGADRLQ GMR AFGKP GT ARV  GQ +L VR K  +  HA+EALRR  +K   P R ++I
Sbjct:   24 RKEYIHGVPPPKIQKFVMGNPH---GDYDYIVEVYVTERGQIRHNALEAARVAVHKYLSTTIGDQNYFFRVRVYPHHVLRENKMMAFAGADRLQEGMRQAFGKPVGTAARVYPGQAVLEVRVKKEHLDHAKEALRRGASKLPLPSRIRVI 170          
BLAST of CN186028 vs. ExPASy Swiss-Prot
Match: RL10_STAMF (50S ribosomal protein L10e OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 3.391e-27
Identity = 65/148 (43.92%), Postives = 91/148 (61.49%), Query Frame = -2
Query:  325 KSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKII 768
            +  +  GVP PKI  +++G       ++ +   LV  E   +   ALEAAR+  NKY++   G   + L++RV+P HVLR NKM++ AGADRLQ GMR AFGKP GT ARV  G +++ VR +  +  HA+EALRRA  K P   +I+
Sbjct:   19 RREYIPGVPQPKIVKFEMGNVH---GDYDYRAELVMIEAGQIRHNALEAARVMANKYLSSTVGDQNYFLKIRVYPHHVLRENKMMAFAGADRLQDGMRQAFGKPIGTAARVYPGTIVMEVRVRKEHVEHAKEALRRAASKLPLPARIV 163          
The following BLAST results are available for this feature:
BLAST of CN186028 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 92
Match NameE-valueIdentityDescription
RL10L_HUMAN4.230e-7067.7260S ribosomal protein L10-like OS=Homo sapiens GN=... [more]
RL10B_SCHPO1.361e-6865.1060S ribosomal protein L10-B OS=Schizosaccharomyces... [more]
RL10A_SCHPO1.777e-6864.5860S ribosomal protein L10-A OS=Schizosaccharomyces... [more]
RL10_YEAST2.837e-6666.1460S ribosomal protein L10 OS=Saccharomyces cerevis... [more]
RL10_EUGGR7.232e-6259.3960S ribosomal protein L10 OS=Euglena gracilis GN=R... [more]
RL10_ENCCU2.407e-5763.8460S ribosomal protein L10 OS=Encephalitozoon cunic... [more]
RL10_METKA3.501e-3248.3450S ribosomal protein L10e OS=Methanopyrus kandler... [more]
RL10_AERPE4.005e-2844.9750S ribosomal protein L10e OS=Aeropyrum pernix GN=... [more]
RL10_HYPBU1.522e-2745.3350S ribosomal protein L10e OS=Hyperthermus butylic... [more]
RL10_STAMF3.391e-2743.9250S ribosomal protein L10e OS=Staphylothermus mari... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002E03_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002E03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186028 ID=CN186028; Name=CN186028; organism=Citrus sinensis; type=EST; length=772bp
TTTTTTTTTTCACTTAACAACTGCAAGGATCACATAGTTAAACCAAAGAA
ACATGTCACTTCAACTTGAGAAATCCAGTTCAACTGAGAAAAGGTACGAA
ATGGAAAATAATAAACTAGACAGTAGACCCAGCTCTGCTATTTTGAGACA
GTAAATATCTTAGGTTGTTGCTTCCAGGAAAGCTCTTCCAGGTTGACGTT
GAGCCAAAGGACCATGACATCCGAGAAGCTTGGCATTCACACCATCTGGG
ACAATCCTGTTCTCCGACTTCCACCGCAGATAATCAGCACGGCTGAACTT
GGTAAATCCCCATTTCCTGCTGACAATAATCTTTTGACGACCAGGAAACT
TGAACTTAGCACGGCGAAGGGCCTCCTGAGCATGGTGGCTGTTACTATCC
TTGCAACGGACAGAAAGCAAGACCTGCCCGATAGCAACACGAGCACAGGT
TCCTTGGGGCTTTCCAAAAGCACCCCTCATTCCAGTCTGGAGCCTATCAG
CCCCAGCACACGAAAGCATCTTGTTAATACGCAGAACATGGAAGGGGTGC
ACCCTCACTCGCAAATGGAAAGCATCCTTGCCGGCGTACTTGGCCATGTA
CTTGTTGCAAGCGATACGGGCAGCTTCCAAGGCCTCGCTCGACACGTTCT
CCTTCTCCCAACTGACGAGGTGAACGCAGAAGGGGAACTCGTCGACGCCT
TTCTTCTTCATCCCGACATCGTAGATTCTGATCTTGGGATCGGGGACACC
GCGGCAAAAGCGGGACTTTGGG
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