CN186028

Overview
NameCN186028
Unique NameCN186028
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length772
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN186028 vs. ExPASy Swiss-Prot
Match: RL10_METPE (50S ribosomal protein L10e OS=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.742e-21
Identity = 57/151 (37.75%), Postives = 84/151 (55.63%), Query Frame = -2
Query:  316 KSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSR 768
            + ++  GVP  KI  +++G   +   EFP  + L   E   +   ALEAARIA N+ M    G+  FH ++R +P HVLR NK  + AGADR+  GMR AFGK  GT ARV   Q + +V   +     +++ALR   +K P   ++++ R
Sbjct:   19 RRKYMGGVPGSKIVQFEMGNLSQ---EFPVEISLEVLESCQIRHTALEAARIAINRKMMDQVGRANFHFKIRTYPHHVLRENKQATGAGADRVSEGMRMAFGKAVGTAARVQPKQKVFTVYTNEQYIEKSKDALRHGGYKLPSPARLVIER 166          
BLAST of CN186028 vs. ExPASy Swiss-Prot
Match: RL10_HALMA (50S ribosomal protein L10e OS=Haloarcula marismortui GN=rpl10e PE=1 SV=2)

HSP 1 Score: 101.293 bits (251), Expect = 6.194e-21
Identity = 55/152 (36.18%), Postives = 86/152 (56.58%), Query Frame = -2
Query:  316 KSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDA-FHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSR 768
            +  +  G+P  KI  + +G K+K  D++P  + L+  E   +   +LEA+R++ N+++ K  G++  + + +R  P  VLR NK  + AGADR+  GMR AFGK  GT ARV  G+ L +  C   ++ H +EA RRA  K     +I V R
Sbjct:   19 RREYITGIPGSKIAQHKMGRKQKDADDYPVQISLIVEETVQLRHGSLEASRLSANRHLIKELGEEGDYKMTLRKFPHQVLRENKQATGAGADRVSDGMRAAFGKIVGTAARVQAGEQLFTAYCNVEDAEHVKEAFRRAYNKITPSCRIKVER 170          
BLAST of CN186028 vs. ExPASy Swiss-Prot
Match: RL10_THEGJ (50S ribosomal protein L10e OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 8.089e-21
Identity = 57/142 (40.14%), Postives = 78/142 (54.93%), Query Frame = -2
Query:  343 KSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFP 768
            +  + RG P PKI I+D+G       EF + V L + +   +   ALEA RI  N+Y+ K  G+  +H ++RV+PF VLR N M +   ADR   GMR  FGKP G  ARV   Q +L+V   + +   A  A+ RAK K P
Sbjct:   19 RREYIRGAPGPKITIFDMGNLSA---EFEYEVSLHAEQAMQIRQNALEAIRIQVNRYLQKNVGRSNYHFKIRVYPFQVLRENPMATGRKADRYGNGMRRPFGKPIGLAARVKKDQKILTVWVNEQHLKFALGAMHRAKMKLP 157          
BLAST of CN186028 vs. ExPASy Swiss-Prot
Match: RL10_METAC (50S ribosomal protein L10e OS=Methanosarcina acetivorans GN=rpl10e PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 8.089e-21
Identity = 59/149 (39.60%), Postives = 86/149 (57.72%), Query Frame = -2
Query:  322 KSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIV 768
            + ++  GVP  ++  YD+G K      FP  + L+  EK  +   ALEAARI  N+++    GK  F++++RV+P  V+R NK  + AGADR+ +GMR AFGK  GT ARV   Q + +V  +  N   A+EAL  A  K P   +I+V
Sbjct:   19 RRKYMGGVPGSQVIHYDMGDKAN--TSFPVKISLIVEEKCQIRHTALEAARITANRHLVADTGKMGFYMKLRVYPHEVIRENKQATGAGADRVSSGMRRAFGKNVGTAARVKPMQKIFTVAVEKQNFKAAKEALWHAGQKLPTPCRIVV 165          
BLAST of CN186028 vs. ExPASy Swiss-Prot
Match: RL10_PYRKO (50S ribosomal protein L10e OS=Pyrococcus kodakaraensis GN=rpl10e PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.802e-20
Identity = 57/142 (40.14%), Postives = 77/142 (54.23%), Query Frame = -2
Query:  343 KSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFP 768
            +  + RG P PKI I+D+G       EF + V L + +   +   ALEA RI  N+Y+ K  G+  +H ++RV+PF VLR N M +   ADR   GMR  FGKP G  ARV   Q +L+V     +   A  A+ RAK K P
Sbjct:   19 RREYIRGAPGPKITIFDMGNLSA---EFEYEVSLHAEQAMQIRQNALEAIRIQVNRYLQKNVGRSNYHFKIRVYPFQVLRENPMATGRKADRYGNGMRRPFGKPIGLAARVRKDQKILTVWVNGQHLKFALGAMHRAKMKLP 157          
BLAST of CN186028 vs. ExPASy Swiss-Prot
Match: RL10_METMJ (50S ribosomal protein L10e OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.074e-20
Identity = 59/151 (39.07%), Postives = 83/151 (54.97%), Query Frame = -2
Query:  316 KSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSR 768
            +  +  GVP  KI  +D+G      +++P  + +V  E   +   ALEAARI  N+ + K  G+  FHL++R  P HVLR NK  + AGADR+  GMR AFGK  GT ARV  GQ + SV         A+ +L+R  +K P   +I+  R
Sbjct:   19 RREYMGGVPGSKIVQFDMGNL---TEDYPVELSIVVDETCQIRHTALEAARIGINRQLQKEVGRANFHLKIRTFPHHVLRENKQATGAGADRVSEGMRLAFGKAVGTAARVEKGQKVFSVWTSPQYVDKAKVSLKRGIYKLPTPARIVEER 166          
BLAST of CN186028 vs. ExPASy Swiss-Prot
Match: RL10_METBF (50S ribosomal protein L10e OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.526e-19
Identity = 57/149 (38.26%), Postives = 87/149 (58.39%), Query Frame = -2
Query:  322 KSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIV 768
            + ++  GVP  ++  YD+G K      FP  + L+  EK  +   ALEAARI  N+++ +  GK  +++++RV+P  VLR NK  + AGADR+ +GMR AFGK  GT ARV   Q + +V  +  N   A++AL  A  K P   +I++
Sbjct:   19 RRKYMGGVPGSQVIHYDMGDKAN--TSFPIKLSLLVEEKCQIRHTALEAARITANRHLIEDTGKMGYYMKLRVYPHEVLRENKQATGAGADRVSSGMRRAFGKNVGTAARVNPFQKIFTVAVEKQNFVAAKKALWHAGQKLPTPCRIVI 165          
BLAST of CN186028 vs. ExPASy Swiss-Prot
Match: RL10_METHJ (50S ribosomal protein L10e OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.602e-19
Identity = 55/152 (36.18%), Postives = 82/152 (53.95%), Query Frame = -2
Query:  313 KSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRK 768
            +  +  G+P  K+  +D+G       EFP  V LV  E   +   ALEAAR++ N+ + K  G+  +HL++R +P HVLR NK  + AGADR+  GMR AFGK  GT AR    Q + +V    ++    ++ALR    K P    +++  K
Sbjct:   19 RKEYMGGIPGVKVVHFDMGNL---TSEFPMEVSLVVDESCQIRHSALEAARMSINRKLNKELGRMNYHLKLRTYPHHVLRENKQATGAGADRVSQGMRLAFGKAVGTAARCQQNQKIFTVFSNPASVEKIKDALRHGGHKLPSPTHLVIEMK 167          
BLAST of CN186028 vs. ExPASy Swiss-Prot
Match: RL10_HALSA (50S ribosomal protein L10e OS=Halobacterium salinarium GN=rpl10e PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 7.571e-19
Identity = 52/148 (35.14%), Postives = 82/148 (55.41%), Query Frame = -2
Query:  316 FCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSR 759
            +  G+P  KI  + +G  +   D++P  + LV  E+  +   +LEAAR++ N+++ K  G+  + +++R  P  ++R NK  + AGADR+  GMR AFG P GT AR+  G  L +  C+   +   +EA RRA  K     KI V R
Sbjct:   22 YVTGIPGSKIAQHKMGDLQADADDYPVQISLVPQEECQLRHGSLEAARLSANRHLIKELGEGNYKMQLRKFPHQIIRENKQATGAGADRVSDGMRQAFGVPVGTAARIQPGDQLFTAYCEVEQAAAVKEAFRRAYNKITPPCKINVER 169          
BLAST of CN186028 vs. ExPASy Swiss-Prot
Match: RL10_HALS3 (50S ribosomal protein L10e OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 7.571e-19
Identity = 52/148 (35.14%), Postives = 82/148 (55.41%), Query Frame = -2
Query:  316 FCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSR 759
            +  G+P  KI  + +G  +   D++P  + LV  E+  +   +LEAAR++ N+++ K  G+  + +++R  P  ++R NK  + AGADR+  GMR AFG P GT AR+  G  L +  C+   +   +EA RRA  K     KI V R
Sbjct:   22 YVTGIPGSKIAQHKMGDLQADADDYPVQISLVPQEECQLRHGSLEAARLSANRHLIKELGEGNYKMQLRKFPHQIIRENKQATGAGADRVSDGMRQAFGVPVGTAARIQPGDQLFTAYCEVEQAAAVKEAFRRAYNKITPPCKINVER 169          
The following BLAST results are available for this feature:
BLAST of CN186028 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 92
Match NameE-valueIdentityDescription
RL10_METPE4.742e-2137.7550S ribosomal protein L10e OS=Methanosphaerula pal... [more]
RL10_HALMA6.194e-2136.1850S ribosomal protein L10e OS=Haloarcula marismort... [more]
RL10_THEGJ8.089e-2140.1450S ribosomal protein L10e OS=Thermococcus gammato... [more]
RL10_METAC8.089e-2139.6050S ribosomal protein L10e OS=Methanosarcina aceti... [more]
RL10_PYRKO1.802e-2040.1450S ribosomal protein L10e OS=Pyrococcus kodakarae... [more]
RL10_METMJ3.074e-2039.0750S ribosomal protein L10e OS=Methanoculleus maris... [more]
RL10_METBF1.526e-1938.2650S ribosomal protein L10e OS=Methanosarcina barke... [more]
RL10_METHJ2.602e-1936.1850S ribosomal protein L10e OS=Methanospirillum hun... [more]
RL10_HALSA7.571e-1935.1450S ribosomal protein L10e OS=Halobacterium salina... [more]
RL10_HALS37.571e-1935.1450S ribosomal protein L10e OS=Halobacterium salina... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002E03_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002E03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186028 ID=CN186028; Name=CN186028; organism=Citrus sinensis; type=EST; length=772bp
TTTTTTTTTTCACTTAACAACTGCAAGGATCACATAGTTAAACCAAAGAA
ACATGTCACTTCAACTTGAGAAATCCAGTTCAACTGAGAAAAGGTACGAA
ATGGAAAATAATAAACTAGACAGTAGACCCAGCTCTGCTATTTTGAGACA
GTAAATATCTTAGGTTGTTGCTTCCAGGAAAGCTCTTCCAGGTTGACGTT
GAGCCAAAGGACCATGACATCCGAGAAGCTTGGCATTCACACCATCTGGG
ACAATCCTGTTCTCCGACTTCCACCGCAGATAATCAGCACGGCTGAACTT
GGTAAATCCCCATTTCCTGCTGACAATAATCTTTTGACGACCAGGAAACT
TGAACTTAGCACGGCGAAGGGCCTCCTGAGCATGGTGGCTGTTACTATCC
TTGCAACGGACAGAAAGCAAGACCTGCCCGATAGCAACACGAGCACAGGT
TCCTTGGGGCTTTCCAAAAGCACCCCTCATTCCAGTCTGGAGCCTATCAG
CCCCAGCACACGAAAGCATCTTGTTAATACGCAGAACATGGAAGGGGTGC
ACCCTCACTCGCAAATGGAAAGCATCCTTGCCGGCGTACTTGGCCATGTA
CTTGTTGCAAGCGATACGGGCAGCTTCCAAGGCCTCGCTCGACACGTTCT
CCTTCTCCCAACTGACGAGGTGAACGCAGAAGGGGAACTCGTCGACGCCT
TTCTTCTTCATCCCGACATCGTAGATTCTGATCTTGGGATCGGGGACACC
GCGGCAAAAGCGGGACTTTGGG
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