CN186028
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN186028 vs. ExPASy Swiss-Prot
Match: RL10_METPE (50S ribosomal protein L10e OS=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=rpl10e PE=3 SV=1) HSP 1 Score: 101.679 bits (252), Expect = 4.742e-21 Identity = 57/151 (37.75%), Postives = 84/151 (55.63%), Query Frame = -2 Query: 316 KSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSR 768 + ++ GVP KI +++G + EFP + L E + ALEAARIA N+ M G+ FH ++R +P HVLR NK + AGADR+ GMR AFGK GT ARV Q + +V + +++ALR +K P ++++ R Sbjct: 19 RRKYMGGVPGSKIVQFEMGNLSQ---EFPVEISLEVLESCQIRHTALEAARIAINRKMMDQVGRANFHFKIRTYPHHVLRENKQATGAGADRVSEGMRMAFGKAVGTAARVQPKQKVFTVYTNEQYIEKSKDALRHGGYKLPSPARLVIER 166
BLAST of CN186028 vs. ExPASy Swiss-Prot
Match: RL10_HALMA (50S ribosomal protein L10e OS=Haloarcula marismortui GN=rpl10e PE=1 SV=2) HSP 1 Score: 101.293 bits (251), Expect = 6.194e-21 Identity = 55/152 (36.18%), Postives = 86/152 (56.58%), Query Frame = -2 Query: 316 KSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDA-FHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSR 768 + + G+P KI + +G K+K D++P + L+ E + +LEA+R++ N+++ K G++ + + +R P VLR NK + AGADR+ GMR AFGK GT ARV G+ L + C ++ H +EA RRA K +I V R Sbjct: 19 RREYITGIPGSKIAQHKMGRKQKDADDYPVQISLIVEETVQLRHGSLEASRLSANRHLIKELGEEGDYKMTLRKFPHQVLRENKQATGAGADRVSDGMRAAFGKIVGTAARVQAGEQLFTAYCNVEDAEHVKEAFRRAYNKITPSCRIKVER 170
BLAST of CN186028 vs. ExPASy Swiss-Prot
Match: RL10_THEGJ (50S ribosomal protein L10e OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=rpl10e PE=3 SV=1) HSP 1 Score: 100.908 bits (250), Expect = 8.089e-21 Identity = 57/142 (40.14%), Postives = 78/142 (54.93%), Query Frame = -2 Query: 343 KSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFP 768 + + RG P PKI I+D+G EF + V L + + + ALEA RI N+Y+ K G+ +H ++RV+PF VLR N M + ADR GMR FGKP G ARV Q +L+V + + A A+ RAK K P Sbjct: 19 RREYIRGAPGPKITIFDMGNLSA---EFEYEVSLHAEQAMQIRQNALEAIRIQVNRYLQKNVGRSNYHFKIRVYPFQVLRENPMATGRKADRYGNGMRRPFGKPIGLAARVKKDQKILTVWVNEQHLKFALGAMHRAKMKLP 157
BLAST of CN186028 vs. ExPASy Swiss-Prot
Match: RL10_METAC (50S ribosomal protein L10e OS=Methanosarcina acetivorans GN=rpl10e PE=3 SV=1) HSP 1 Score: 100.908 bits (250), Expect = 8.089e-21 Identity = 59/149 (39.60%), Postives = 86/149 (57.72%), Query Frame = -2 Query: 322 KSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIV 768 + ++ GVP ++ YD+G K FP + L+ EK + ALEAARI N+++ GK F++++RV+P V+R NK + AGADR+ +GMR AFGK GT ARV Q + +V + N A+EAL A K P +I+V Sbjct: 19 RRKYMGGVPGSQVIHYDMGDKAN--TSFPVKISLIVEEKCQIRHTALEAARITANRHLVADTGKMGFYMKLRVYPHEVIRENKQATGAGADRVSSGMRRAFGKNVGTAARVKPMQKIFTVAVEKQNFKAAKEALWHAGQKLPTPCRIVV 165
BLAST of CN186028 vs. ExPASy Swiss-Prot
Match: RL10_PYRKO (50S ribosomal protein L10e OS=Pyrococcus kodakaraensis GN=rpl10e PE=3 SV=1) HSP 1 Score: 99.7525 bits (247), Expect = 1.802e-20 Identity = 57/142 (40.14%), Postives = 77/142 (54.23%), Query Frame = -2 Query: 343 KSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFP 768 + + RG P PKI I+D+G EF + V L + + + ALEA RI N+Y+ K G+ +H ++RV+PF VLR N M + ADR GMR FGKP G ARV Q +L+V + A A+ RAK K P Sbjct: 19 RREYIRGAPGPKITIFDMGNLSA---EFEYEVSLHAEQAMQIRQNALEAIRIQVNRYLQKNVGRSNYHFKIRVYPFQVLRENPMATGRKADRYGNGMRRPFGKPIGLAARVRKDQKILTVWVNGQHLKFALGAMHRAKMKLP 157
BLAST of CN186028 vs. ExPASy Swiss-Prot
Match: RL10_METMJ (50S ribosomal protein L10e OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=rpl10e PE=3 SV=1) HSP 1 Score: 98.9821 bits (245), Expect = 3.074e-20 Identity = 59/151 (39.07%), Postives = 83/151 (54.97%), Query Frame = -2 Query: 316 KSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSR 768 + + GVP KI +D+G +++P + +V E + ALEAARI N+ + K G+ FHL++R P HVLR NK + AGADR+ GMR AFGK GT ARV GQ + SV A+ +L+R +K P +I+ R Sbjct: 19 RREYMGGVPGSKIVQFDMGNL---TEDYPVELSIVVDETCQIRHTALEAARIGINRQLQKEVGRANFHLKIRTFPHHVLRENKQATGAGADRVSEGMRLAFGKAVGTAARVEKGQKVFSVWTSPQYVDKAKVSLKRGIYKLPTPARIVEER 166
BLAST of CN186028 vs. ExPASy Swiss-Prot
Match: RL10_METBF (50S ribosomal protein L10e OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rpl10e PE=3 SV=1) HSP 1 Score: 96.6709 bits (239), Expect = 1.526e-19 Identity = 57/149 (38.26%), Postives = 87/149 (58.39%), Query Frame = -2 Query: 322 KSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIV 768 + ++ GVP ++ YD+G K FP + L+ EK + ALEAARI N+++ + GK +++++RV+P VLR NK + AGADR+ +GMR AFGK GT ARV Q + +V + N A++AL A K P +I++ Sbjct: 19 RRKYMGGVPGSQVIHYDMGDKAN--TSFPIKLSLLVEEKCQIRHTALEAARITANRHLIEDTGKMGYYMKLRVYPHEVLRENKQATGAGADRVSSGMRRAFGKNVGTAARVNPFQKIFTVAVEKQNFVAAKKALWHAGQKLPTPCRIVI 165
BLAST of CN186028 vs. ExPASy Swiss-Prot
Match: RL10_METHJ (50S ribosomal protein L10e OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rpl10e PE=3 SV=1) HSP 1 Score: 95.9005 bits (237), Expect = 2.602e-19 Identity = 55/152 (36.18%), Postives = 82/152 (53.95%), Query Frame = -2 Query: 313 KSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRK 768 + + G+P K+ +D+G EFP V LV E + ALEAAR++ N+ + K G+ +HL++R +P HVLR NK + AGADR+ GMR AFGK GT AR Q + +V ++ ++ALR K P +++ K Sbjct: 19 RKEYMGGIPGVKVVHFDMGNL---TSEFPMEVSLVVDESCQIRHSALEAARMSINRKLNKELGRMNYHLKLRTYPHHVLRENKQATGAGADRVSQGMRLAFGKAVGTAARCQQNQKIFTVFSNPASVEKIKDALRHGGHKLPSPTHLVIEMK 167
BLAST of CN186028 vs. ExPASy Swiss-Prot
Match: RL10_HALSA (50S ribosomal protein L10e OS=Halobacterium salinarium GN=rpl10e PE=3 SV=1) HSP 1 Score: 94.3597 bits (233), Expect = 7.571e-19 Identity = 52/148 (35.14%), Postives = 82/148 (55.41%), Query Frame = -2 Query: 316 FCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSR 759 + G+P KI + +G + D++P + LV E+ + +LEAAR++ N+++ K G+ + +++R P ++R NK + AGADR+ GMR AFG P GT AR+ G L + C+ + +EA RRA K KI V R Sbjct: 22 YVTGIPGSKIAQHKMGDLQADADDYPVQISLVPQEECQLRHGSLEAARLSANRHLIKELGEGNYKMQLRKFPHQIIRENKQATGAGADRVSDGMRQAFGVPVGTAARIQPGDQLFTAYCEVEQAAAVKEAFRRAYNKITPPCKINVER 169
BLAST of CN186028 vs. ExPASy Swiss-Prot
Match: RL10_HALS3 (50S ribosomal protein L10e OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=rpl10e PE=3 SV=1) HSP 1 Score: 94.3597 bits (233), Expect = 7.571e-19 Identity = 52/148 (35.14%), Postives = 82/148 (55.41%), Query Frame = -2 Query: 316 FCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSR 759 + G+P KI + +G + D++P + LV E+ + +LEAAR++ N+++ K G+ + +++R P ++R NK + AGADR+ GMR AFG P GT AR+ G L + C+ + +EA RRA K KI V R Sbjct: 22 YVTGIPGSKIAQHKMGDLQADADDYPVQISLVPQEECQLRHGSLEAARLSANRHLIKELGEGNYKMQLRKFPHQIIRENKQATGAGADRVSDGMRQAFGVPVGTAARIQPGDQLFTAYCEVEQAAAVKEAFRRAYNKITPPCKINVER 169 The following BLAST results are available for this feature:
BLAST of CN186028 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 92
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CN186028 ID=CN186028; Name=CN186028; organism=Citrus sinensis; type=EST; length=772bpback to top |