CN186028

Overview
NameCN186028
Unique NameCN186028
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length772
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig242 contig Csv1_Contig242:103..874. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CN186028 vs. ExPASy Swiss-Prot
Match: RL10_NATPD (50S ribosomal protein L10e OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 7.835e-16
Identity = 49/152 (32.24%), Postives = 83/152 (54.61%), Query Frame = -2 
Query:  316 KSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDA-FHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSR 768
            +  +  G+P  K+  Y +G  +   +++   + L+  E+  +   +LEA+R++ N+ M K  G+D  + + +R  P  V+R NK  + AGADR+  GMR AFGK  GT AR+  G+ + ++ C   ++  A++A RRA  K      I V R
Sbjct:   19 RREYITGIPGSKVAQYKMGNFEADPEDYEVQISLIVDEEVQIRHGSLEASRLSANRRMLKELGEDGDYKMILRKFPHQVIRENKQATGAGADRVSDGMRQAFGKIVGTAARINKGERVFTIWCHPEDADAAKDAFRRAYNKISPPCTIKVER 170
[Close]
BLAST of CN186028 vs. ExPASy Swiss-Prot
Match: RL10_NANEQ (50S ribosomal protein L10e OS=Nanoarchaeum equitans GN=rpl10e PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.383e-12
Identity = 42/142 (29.58%), Postives = 74/142 (52.11%), Query Frame = -2 
Query:  331 GVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKML-SCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKD-SNSHHAQEALRRAKFKFPGRQK 750
            G     +R++ +G   +   E+ +   LV+ E   +   A+EA R+  NKY+    GK  +   +R +P H+ R   ++   AGADR+  GMR +FG+P+G   ++  G+ LLS+   D + +   +  L+ A+ K P R +
Sbjct:   31 GAKPTMVRLFHMGELTRNPSEWQYEASLVAKENHQIRDNAIEAIRVMVNKYLESTLGKKRYLFIIRKYPHHIYREKPVVGGYAGADRISQGMRLSFGRPKGRAVQIYEGEKLLSIFFDDITKAKDIKYFLQVARSKLPWRYR 172
The following BLAST results are available for this feature:
BLAST of CN186028 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 92
Match NameE-valueIdentityDescription
RL10_NATPD7.835e-1632.2450S ribosomal protein L10e OS=Natronomonas pharaon... [more]
RL10_NANEQ1.383e-1229.5850S ribosomal protein L10e OS=Nanoarchaeum equitan... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002E03_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002E03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186028 ID=CN186028; Name=CN186028; organism=Citrus sinensis; type=EST; length=772bp
TTTTTTTTTTCACTTAACAACTGCAAGGATCACATAGTTAAACCAAAGAA
ACATGTCACTTCAACTTGAGAAATCCAGTTCAACTGAGAAAAGGTACGAA
ATGGAAAATAATAAACTAGACAGTAGACCCAGCTCTGCTATTTTGAGACA
GTAAATATCTTAGGTTGTTGCTTCCAGGAAAGCTCTTCCAGGTTGACGTT
GAGCCAAAGGACCATGACATCCGAGAAGCTTGGCATTCACACCATCTGGG
ACAATCCTGTTCTCCGACTTCCACCGCAGATAATCAGCACGGCTGAACTT
GGTAAATCCCCATTTCCTGCTGACAATAATCTTTTGACGACCAGGAAACT
TGAACTTAGCACGGCGAAGGGCCTCCTGAGCATGGTGGCTGTTACTATCC
TTGCAACGGACAGAAAGCAAGACCTGCCCGATAGCAACACGAGCACAGGT
TCCTTGGGGCTTTCCAAAAGCACCCCTCATTCCAGTCTGGAGCCTATCAG
CCCCAGCACACGAAAGCATCTTGTTAATACGCAGAACATGGAAGGGGTGC
ACCCTCACTCGCAAATGGAAAGCATCCTTGCCGGCGTACTTGGCCATGTA
CTTGTTGCAAGCGATACGGGCAGCTTCCAAGGCCTCGCTCGACACGTTCT
CCTTCTCCCAACTGACGAGGTGAACGCAGAAGGGGAACTCGTCGACGCCT
TTCTTCTTCATCCCGACATCGTAGATTCTGATCTTGGGATCGGGGACACC
GCGGCAAAAGCGGGACTTTGGG
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