CN186026

Overview
NameCN186026
Unique NameCN186026
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length775
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN186026 vs. ExPASy Swiss-Prot
Match: UB2G2_PONAB (Ubiquitin-conjugating enzyme E2 G2 OS=Pongo abelii GN=UBE2G2 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 5.302e-21
Identity = 46/114 (40.35%), Postives = 63/114 (55.26%), Query Frame = -1
Query:  467 ASKRI*RELKDLQKDPPTSCSAGPVAED-MFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL-------------KEQWSPALTISK 766
            A KR+  E K L  +PP    AGP+ E+  F W+A IMGP D+ +  GVF   + FP DYP  PPK+ F  ++FHPNI  +G +C+ IL              E+WSP  ++ K
Sbjct:    5 ALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEK 118          

HSP 2 Score: 31.9574 bits (71), Expect = 5.302e-21
Identity = 13/44 (29.55%), Postives = 26/44 (59.09%), Query Frame = -3
Query:  243 KVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQK 374
            K+LLS+ S+L +PN +     + + M++ D+ ++   A+   QK
Sbjct:  118 KILLSVVSMLAEPNDESGANVDASKMWRDDREQFYKIAKQIVQK 161          
BLAST of CN186026 vs. ExPASy Swiss-Prot
Match: UB2G2_MOUSE (Ubiquitin-conjugating enzyme E2 G2 OS=Mus musculus GN=Ube2g2 PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 5.302e-21
Identity = 46/114 (40.35%), Postives = 63/114 (55.26%), Query Frame = -1
Query:  467 ASKRI*RELKDLQKDPPTSCSAGPVAED-MFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL-------------KEQWSPALTISK 766
            A KR+  E K L  +PP    AGP+ E+  F W+A IMGP D+ +  GVF   + FP DYP  PPK+ F  ++FHPNI  +G +C+ IL              E+WSP  ++ K
Sbjct:    5 ALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEK 118          

HSP 2 Score: 31.9574 bits (71), Expect = 5.302e-21
Identity = 13/44 (29.55%), Postives = 26/44 (59.09%), Query Frame = -3
Query:  243 KVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQK 374
            K+LLS+ S+L +PN +     + + M++ D+ ++   A+   QK
Sbjct:  118 KILLSVVSMLAEPNDESGANVDASKMWRDDREQFYKIAKQIVQK 161          
BLAST of CN186026 vs. ExPASy Swiss-Prot
Match: UB2G2_HUMAN (Ubiquitin-conjugating enzyme E2 G2 OS=Homo sapiens GN=UBE2G2 PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 5.302e-21
Identity = 46/114 (40.35%), Postives = 63/114 (55.26%), Query Frame = -1
Query:  467 ASKRI*RELKDLQKDPPTSCSAGPVAED-MFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL-------------KEQWSPALTISK 766
            A KR+  E K L  +PP    AGP+ E+  F W+A IMGP D+ +  GVF   + FP DYP  PPK+ F  ++FHPNI  +G +C+ IL              E+WSP  ++ K
Sbjct:    5 ALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEK 118          

HSP 2 Score: 31.9574 bits (71), Expect = 5.302e-21
Identity = 13/44 (29.55%), Postives = 26/44 (59.09%), Query Frame = -3
Query:  243 KVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQK 374
            K+LLS+ S+L +PN +     + + M++ D+ ++   A+   QK
Sbjct:  118 KILLSVVSMLAEPNDESGANVDASKMWRDDREQFYKIAKQIVQK 161          
BLAST of CN186026 vs. ExPASy Swiss-Prot
Match: UBE2S_RANCA (Ubiquitin-conjugating enzyme E2 S OS=Rana catesbeiana GN=ube2s PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 8.889e-21
Identity = 40/96 (41.67%), Postives = 59/96 (61.46%), Query Frame = -1
Query:  473 KRI*RELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTI 760
            +++ +E+  L  DPP      P  ED+   Q +I GP  +PYAGG+F + +    D+P  PPK  F TK+FHPN++SNG IC+++LK+ W   L I
Sbjct:   14 RQVYKEVSTLTPDPPEGIKIIPNEEDITDVQVSIEGPEGTPYAGGIFRMKLILGKDFPAAPPKGYFLTKIFHPNVSSNGEICVNVLKKDWKAELGI 109          

HSP 2 Score: 31.5722 bits (70), Expect = 8.889e-21
Identity = 21/60 (35.00%), Postives = 28/60 (46.67%), Query Frame = -3
Query:  216 KCIFGSCKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYAMG*RLLG 395
            K   G   VLL+I  LL  PNP+  L  E   +   +  +Y S AR  T+ +A    L G
Sbjct:  104 KAELGIRHVLLTIKCLLIHPNPESALNEEAGRLLLENYEEYASRARLMTEIHAHSSSLRG 163          
BLAST of CN186026 vs. ExPASy Swiss-Prot
Match: UBC7_SCHPO (Ubiquitin-conjugating enzyme E2-18 kDa OS=Schizosaccharomyces pombe GN=ubc3 PE=2 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 1.167e-20
Identity = 42/117 (35.90%), Postives = 65/117 (55.56%), Query Frame = -1
Query:  467 RVMASKRI*RELKDLQKDPPTSCSAGPVAED-MFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL-------------KEQWSPALTISK 775
            + MA +R+ +E K+L ++ P   +AGP  ED  F W   I GP  +P+ GG++  T+ FP DYP  PP + F  + FHPN+  +G++C+ IL              E+WSP  ++ K
Sbjct:    3 KAMALRRLMKEYKELTENGPDGITAGPSNEDDFFTWDCLIQGPDGTPFEGGLYPATLKFPSDYPLGPPTLKFECEFFHPNVYKDGTVCISILHAPGDDPNMYESSSERWSPVQSVEK 119          

HSP 2 Score: 30.0314 bits (66), Expect = 1.167e-20
Identity = 13/44 (29.55%), Postives = 24/44 (54.55%), Query Frame = -3
Query:  243 KVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQK 374
            K+LLS+ S+L +PN +     +   M++ D+ +Y    R   +K
Sbjct:  119 KILLSVMSMLAEPNDESGANIDACKMWREDREEYCRVVRRLARK 162          
BLAST of CN186026 vs. ExPASy Swiss-Prot
Match: UB2SC_XENLA (Ubiquitin-conjugating enzyme E2 S-C OS=Xenopus laevis GN=ube2s-C PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.504e-20
Identity = 39/96 (40.62%), Postives = 57/96 (59.38%), Query Frame = -1
Query:  473 KRI*RELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTI 760
            +R+ +E+  L  DPP      P  ED+   Q  I GP  +PYA G+F + +    D+P  PPK  F TK+FHPN+++NG IC+++LK+ W   L I
Sbjct:   14 RRVYKEVSTLTSDPPEGIKIIPNEEDITDVQVHIEGPEGTPYAAGIFRMKLILGKDFPAAPPKGYFLTKIFHPNVSNNGEICVNVLKKDWKAELGI 109          

HSP 2 Score: 33.4982 bits (75), Expect = 1.504e-20
Identity = 21/60 (35.00%), Postives = 29/60 (48.33%), Query Frame = -3
Query:  216 KCIFGSCKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYAMG*RLLG 395
            K   G   VLL+I  LL  PNP+  L  E   +   +  +Y S A+  T+ +A G  L G
Sbjct:  104 KAELGIRHVLLTIKCLLIHPNPESALNEEAGRLLLENYEEYASRAKLMTEIHAQGSTLRG 163          
BLAST of CN186026 vs. ExPASy Swiss-Prot
Match: UBC21_ARATH (Probable ubiquitin carrier protein E2 21 OS=Arabidopsis thaliana GN=UBC21 PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.981e-20
Identity = 44/98 (44.90%), Postives = 62/98 (63.27%), Query Frame = -1
Query:  473 RI*RELKDLQKDPPTSCSAGPVAED--MFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNIN-SNGSICLDILKEQWSPALTI 757
            R+ +E K++Q++         + +D  +F W A I GPS++PY GGVF +    P  YP +PP+V F TK+FHPN++   G ICLDILK  WSPA T+
Sbjct:    7 RLFKEYKEVQREKVADPDIQLICDDTNIFKWTALIKGPSETPYEGGVFQLAFSVPEPYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTL 104          

HSP 2 Score: 26.1794 bits (56), Expect = 1.981e-20
Identity = 15/47 (31.91%), Postives = 26/47 (55.32%), Query Frame = -3
Query:  234 VLLSICSLLTDPNPDDPLVPEIAHMYKS-DKAKYESTARSWTQKYAM 371
            V  +I +L+  P PD PL  +  ++ +S D   + S A+ +T+  AM
Sbjct:  107 VCRAIIALMAHPEPDSPLNCDSGNLLRSGDVRGFNSMAQMYTRLAAM 153          
BLAST of CN186026 vs. ExPASy Swiss-Prot
Match: UBC11_YEAST (Ubiquitin-conjugating enzyme E2-18 kDa OS=Saccharomyces cerevisiae GN=UBC11 PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.981e-20
Identity = 43/98 (43.88%), Postives = 63/98 (64.29%), Query Frame = -1
Query:  473 SKRI*RELKDLQKDPPTSCSAGPVAE-DMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTI 763
            +KR+  EL  L      S SA PV + D+ +W   I GP D+PY+G  F V++ FP +YPF PP + F + ++HPN++ +G+ICLDILKE+WS    +
Sbjct:   10 TKRLQNELLQLLSSTTESISAFPVDDNDLTYWVGYITGPKDTPYSGLKFKVSLKFPQNYPFHPPMIKFLSPMWHPNVDKSGNICLDILKEKWSAVYNV 107          

HSP 2 Score: 27.335 bits (59), Expect = 1.981e-20
Identity = 13/33 (39.39%), Postives = 20/33 (60.61%), Query Frame = -3
Query:  273 VLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKY 371
            +LLS+ SLL +PN   PL    A ++ +D  +Y
Sbjct:  110 ILLSLQSLLGEPNNRSPLNAVAAELWDADMEEY 142          
BLAST of CN186026 vs. ExPASy Swiss-Prot
Match: UBE2C_SPISO (Ubiquitin-conjugating enzyme E2 C OS=Spisula solidissima GN=UBE2C PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 2.561e-20
Identity = 42/101 (41.58%), Postives = 63/101 (62.38%), Query Frame = -1
Query:  473 RVMASKRI*RELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTI 775
            R   SKR+ +EL+ L        +A P  +++F W AT+ GP D+ Y    + +T+ FP DYP+KPP V F T  +HPN++ +G+ICLDILKE W+ +  +
Sbjct:   28 RHSVSKRLQQELRTLLMSGDPGITAFPDGDNLFKWVATLDGPKDTVYESLKYKLTLEFPSDYPYKPPVVKFTTPCWHPNVDQSGNICLDILKENWTASYDV 128          

HSP 2 Score: 26.1794 bits (56), Expect = 2.561e-20
Identity = 14/34 (41.18%), Postives = 23/34 (67.65%), Query Frame = -3
Query:  270 VLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYE 371
            +LLS+ SLL +PN   PL  + A M+ S++ +Y+
Sbjct:  131 ILLSLQSLLGEPNNASPLNAQAADMW-SNQTEYK 163          
BLAST of CN186026 vs. ExPASy Swiss-Prot
Match: UBE2C_DROME (Ubiquitin-conjugating enzyme E2 C OS=Drosophila melanogaster GN=vih PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 7.333e-20
Identity = 40/92 (43.48%), Postives = 58/92 (63.04%), Query Frame = -1
Query:  488 SKRI*RELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWS 763
            SKR+ +EL +L        SA P  E++F W  TI GP ++ Y+G  + +++ FP  YP+  P V F T  FHPN++  G+ICLDILK++WS
Sbjct:   34 SKRLHKELMNLMMANERGISAFPDGENIFKWVGTIAGPRNTVYSGQTYRLSLDFPNSYPYAAPVVKFLTSCFHPNVDLQGAICLDILKDKWS 125          

HSP 2 Score: 30.0314 bits (66), Expect = 7.333e-20
Identity = 16/44 (36.36%), Postives = 29/44 (65.91%), Query Frame = -3
Query:  240 VLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKY 371
            +LLSI SLL +PN + PL  + A M+ +D+ +Y+    ++ +K+
Sbjct:  133 ILLSIQSLLGEPNNESPLNAQAAMMW-NDQKEYKKYLDAFYEKH 175          
The following BLAST results are available for this feature:
BLAST of CN186026 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 245
Match NameE-valueIdentityDescription
UB2G2_PONAB5.302e-2140.35Ubiquitin-conjugating enzyme E2 G2 OS=Pongo abelii... [more]
UB2G2_MOUSE5.302e-2140.35Ubiquitin-conjugating enzyme E2 G2 OS=Mus musculus... [more]
UB2G2_HUMAN5.302e-2140.35Ubiquitin-conjugating enzyme E2 G2 OS=Homo sapiens... [more]
UBE2S_RANCA8.889e-2141.67Ubiquitin-conjugating enzyme E2 S OS=Rana catesbei... [more]
UBC7_SCHPO1.167e-2035.90Ubiquitin-conjugating enzyme E2-18 kDa OS=Schizosa... [more]
UB2SC_XENLA1.504e-2040.63Ubiquitin-conjugating enzyme E2 S-C OS=Xenopus lae... [more]
UBC21_ARATH1.981e-2044.90Probable ubiquitin carrier protein E2 21 OS=Arabid... [more]
UBC11_YEAST1.981e-2043.88Ubiquitin-conjugating enzyme E2-18 kDa OS=Saccharo... [more]
UBE2C_SPISO2.561e-2041.58Ubiquitin-conjugating enzyme E2 C OS=Spisula solid... [more]
UBE2C_DROME7.333e-2043.48Ubiquitin-conjugating enzyme E2 C OS=Drosophila me... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002D24_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002D24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186026 ID=CN186026; Name=CN186026; organism=Citrus sinensis; type=EST; length=775bp
TTTTTTTTTTTTTTTTTACTTAAGACCATTAACTACGTTCCATCGAAGAA
GCTTCAAACACAAACATTCAACATTAACATAAAAACGTCCCGCCCTTGCA
ACTCCTCCCAACACCATTCTAAAACACCAACGTCTGCCCTCCCCAAAGCA
AGTTAAAGAAAATAGATAGACAACACACACAACATATTTCAATAAATGCT
CCTTTTTCTGCAATATCCTAACAACCTTCATCCCATGGCATACTTCTGTG
TCCAGCTCCTGGCCGTGGATTCATATTTGGCCTTGTCGGACTTGTACATG
TGGGCAATCTCCGGTACAAGAGGGTCGTCGGGATTTGGATCAGTAAGCAA
GGAGCAGATAGAGAGCAGGACTTTGCAAGATCCAAAGATGCACTTGGGAG
TACAACTTTATGATCCCAGGGTCAGTTTTACCTGGCTGTGCAAGACCAGA
GAGTTGTACGCCACTACTTTGAAATGGTAAGCGCTGGACTCCACTGTTCT
TTAAGGATATCAAGACAGATGCTTCCATTGCTGTTGATGTTCGGGTGGAA
GACCTTGGTCCTAAAAGCAACCTTTGGGGGCTTGAAAGGATAATCAGGAG
GAAAATGAATGGTAACTAAAAATACACCTCCTGCATATGGGCTATCAGAA
GGGCCCATAATTGTTGCTTGCCAGTGGAACATGTCTTCAGCCACAGGGCC
AGCGCTGCAAGACGTGGGAGGATCCTTCTGCAAATCCTTGAGTTCCCTTC
AAATACGCTTTGAAGCCATGACTCT
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