CN186026

Overview
NameCN186026
Unique NameCN186026
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length775
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN186026 vs. ExPASy Swiss-Prot
Match: UBC6_KLULA (Ubiquitin-conjugating enzyme E2 6 OS=Kluyveromyces lactis GN=UBC6 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.480e-11
Identity = 34/103 (33.01%), Postives = 53/103 (51.46%), Query Frame = -1
Query:  473 VMASKRI*RELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICL---DILKEQWSPALTI 772
            + A+KR+ +E K++  +PP    A P  +++  W   I GP  +PY  G +  T+ FP DYPF PP +   T   +     N  +CL   D   E W+PA ++
Sbjct:    4 IQANKRLTKEYKNIVNNPPPFIIAAPHEDNILEWHYVITGPPSTPYENGQYHGTLTFPSDYPFNPPAIRMITP--NGRFKENTRLCLSMSDYHPEAWNPAWSV 104          
BLAST of CN186026 vs. ExPASy Swiss-Prot
Match: UBE2W_DANRE (Probable ubiquitin-conjugating enzyme E2 W OS=Danio rerio GN=ube2w PE=2 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 5.851e-11
Identity = 38/100 (38.00%), Postives = 52/100 (52.00%), Query Frame = -1
Query:  473 KRI*RELKDLQKDPPTSCSAGP--VAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVF--HPNINSNGSICLDILKEQWSPALTI 760
            KR+ +EL  LQ DPP   +     V   +  W   + G   + Y G  F +   F   YPF+ P+V F  +    HP++ SNG ICL IL E WSPAL++
Sbjct:    6 KRLQKELLALQNDPPAGMTLNERSVQNTITEWFIDMEGAQGTVYEGEKFQLLFKFSSRYPFESPQVMFTGENIPVHPHVYSNGHICLSILTEDWSPALSV 105          
BLAST of CN186026 vs. ExPASy Swiss-Prot
Match: UBCX_PICAN (Ubiquitin-conjugating enzyme E2-21 kDa OS=Pichia angusta GN=PEX4 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.851e-11
Identity = 34/98 (34.69%), Postives = 49/98 (50.00%), Query Frame = -1
Query:  473 PVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRT----------------------KVFHPNIN-SNGSICLDILKEQWSPALTI 697
            P+ + +F W A I GP  SP+   ++ + I  P +YP  PPK+ F                        K+ HPN+N   G ICLDIL+++WSPA T+
Sbjct:   36 PLEDGLFRWSAVIRGPDQSPFEDALWKLEIDIPTNYPLDPPKIKFVVFGEEKIRQLQRKTSSGARKVCYKMPHPNVNFKTGEICLDILQQKWSPAWTL 133          
BLAST of CN186026 vs. ExPASy Swiss-Prot
Match: UBC12_YEAST (NEDD8-conjugating enzyme UBC12 OS=Saccharomyces cerevisiae GN=UBC12 PE=1 SV=1)

HSP 1 Score: 63.5438 bits (153), Expect = 7.176e-11
Identity = 28/63 (44.44%), Postives = 39/63 (61.90%), Query Frame = -1
Query:  473 IMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTI 661
            I+ P +  Y  G     + F   YP +PPKV    K+FHPNI+  G++CL+IL+E WSPAL +
Sbjct:   67 IVRPDEGYYNYGSINFNLDFNEVYPIEPPKVVCLKKIFHPNIDLKGNVCLNILREDWSPALDL 129          

HSP 2 Score: 24.2534 bits (51), Expect = 7.176e-11
Identity = 9/38 (23.68%), Postives = 19/38 (50.00%), Query Frame = -3
Query:  258 VLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTAR 371
            ++  +  L  +PNP+DPL  + A +    + ++    R
Sbjct:  132 IITGLLFLFLEPNPNDPLNKDAAKLLCEGEKEFAEAVR 169          
BLAST of CN186026 vs. ExPASy Swiss-Prot
Match: UBE2W_MOUSE (Probable ubiquitin-conjugating enzyme E2 W OS=Mus musculus GN=Ube2w PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.981e-11
Identity = 38/100 (38.00%), Postives = 51/100 (51.00%), Query Frame = -1
Query:  473 KRI*RELKDLQKDPPTSCSAGP--VAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTK--VFHPNINSNGSICLDILKEQWSPALTI 760
            KR+ +EL  LQ DPP   +     V   +  W   + G   + Y G  F +   F   YPF  P+V F  +    HP++ SNG ICL IL E WSPAL++
Sbjct:    6 KRLQKELLALQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFTGENIPIHPHVYSNGHICLSILTEDWSPALSV 105          
The following BLAST results are available for this feature:
BLAST of CN186026 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 245
Match NameE-valueIdentityDescription
UBC6_KLULA4.480e-1133.01Ubiquitin-conjugating enzyme E2 6 OS=Kluyveromyces... [more]
UBE2W_DANRE5.851e-1138.00Probable ubiquitin-conjugating enzyme E2 W OS=Dani... [more]
UBCX_PICAN5.851e-1134.69Ubiquitin-conjugating enzyme E2-21 kDa OS=Pichia a... [more]
UBC12_YEAST7.176e-1144.44NEDD8-conjugating enzyme UBC12 OS=Saccharomyces ce... [more]
UBE2W_MOUSE9.981e-1138.00Probable ubiquitin-conjugating enzyme E2 W OS=Mus ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002D24_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002D24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186026 ID=CN186026; Name=CN186026; organism=Citrus sinensis; type=EST; length=775bp
TTTTTTTTTTTTTTTTTACTTAAGACCATTAACTACGTTCCATCGAAGAA
GCTTCAAACACAAACATTCAACATTAACATAAAAACGTCCCGCCCTTGCA
ACTCCTCCCAACACCATTCTAAAACACCAACGTCTGCCCTCCCCAAAGCA
AGTTAAAGAAAATAGATAGACAACACACACAACATATTTCAATAAATGCT
CCTTTTTCTGCAATATCCTAACAACCTTCATCCCATGGCATACTTCTGTG
TCCAGCTCCTGGCCGTGGATTCATATTTGGCCTTGTCGGACTTGTACATG
TGGGCAATCTCCGGTACAAGAGGGTCGTCGGGATTTGGATCAGTAAGCAA
GGAGCAGATAGAGAGCAGGACTTTGCAAGATCCAAAGATGCACTTGGGAG
TACAACTTTATGATCCCAGGGTCAGTTTTACCTGGCTGTGCAAGACCAGA
GAGTTGTACGCCACTACTTTGAAATGGTAAGCGCTGGACTCCACTGTTCT
TTAAGGATATCAAGACAGATGCTTCCATTGCTGTTGATGTTCGGGTGGAA
GACCTTGGTCCTAAAAGCAACCTTTGGGGGCTTGAAAGGATAATCAGGAG
GAAAATGAATGGTAACTAAAAATACACCTCCTGCATATGGGCTATCAGAA
GGGCCCATAATTGTTGCTTGCCAGTGGAACATGTCTTCAGCCACAGGGCC
AGCGCTGCAAGACGTGGGAGGATCCTTCTGCAAATCCTTGAGTTCCCTTC
AAATACGCTTTGAAGCCATGACTCT
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