CN186026

Overview
NameCN186026
Unique NameCN186026
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length775
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN186026 vs. ExPASy Swiss-Prot
Match: UBC2_ARATH (Ubiquitin-conjugating enzyme E2 2 OS=Arabidopsis thaliana GN=UBC2 PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 8.776e-29
Identity = 48/99 (48.48%), Postives = 66/99 (66.67%), Query Frame = -1
Query:  470 ASKRI*RELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTIS 766
            A KR+ R+ K LQ+DPP   S  P   ++  W A I GP D+P+ GG F +++ F  DYP KPP V F +++FHPNI ++GSICLDIL+ QWSP   ++
Sbjct:    5 ARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVA 103          

HSP 2 Score: 38.891 bits (89), Expect = 8.776e-29
Identity = 21/52 (40.38%), Postives = 27/52 (51.92%), Query Frame = -3
Query:  249 IFGSCKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKY-----ESTARSWT 389
            I+    +L SI SLL DPNP+ P   E A M+   K +Y     E   +SWT
Sbjct:   99 IYDVAAILTSIQSLLCDPNPNSPANSEAARMFSESKREYNRRVREVVEQSWT 150          
BLAST of CN186026 vs. ExPASy Swiss-Prot
Match: UBCD6_DROME (Ubiquitin-conjugating enzyme E2-17 kDa OS=Drosophila melanogaster GN=UbcD6 PE=2 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 1.143e-28
Identity = 48/99 (48.48%), Postives = 65/99 (65.66%), Query Frame = -1
Query:  470 ASKRI*RELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTIS 766
            A +R+ R+ K LQ+DPPT  S  P   ++  W A I GP D+P+  G F +TI F  +YP KPP V F +KVFHPN+ ++G ICLDIL+ +WSP   +S
Sbjct:    5 ARRRLMRDFKRLQEDPPTGVSGAPTDNNIMIWNAVIFGPHDTPFEDGTFKLTIEFTEEYPNKPPTVRFVSKVFHPNVYADGGICLDILQNRWSPTYDVS 103          

HSP 2 Score: 38.1206 bits (87), Expect = 1.143e-28
Identity = 16/43 (37.21%), Postives = 27/43 (62.79%), Query Frame = -3
Query:  243 VLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQK 371
            +L SI SLL+DPNP+ P     A +YK ++ +YE   ++  ++
Sbjct:  105 ILTSIQSLLSDPNPNSPANSTAAQLYKENRREYEKRVKACVEQ 147          
BLAST of CN186026 vs. ExPASy Swiss-Prot
Match: UBC2_MEDSA (Ubiquitin-conjugating enzyme E2 2 OS=Medicago sativa GN=UBC2 PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.143e-28
Identity = 48/99 (48.48%), Postives = 65/99 (65.66%), Query Frame = -1
Query:  470 ASKRI*RELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTIS 766
            A KR+ R+ K LQ DPP   S  P   ++  W A I GP D+P+ GG F +++ F  DYP KPP V F +++FHPNI ++GSICLDIL+ QWSP   ++
Sbjct:    5 ARKRLMRDFKRLQHDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVA 103          

HSP 2 Score: 39.2762 bits (90), Expect = 1.143e-28
Identity = 21/52 (40.38%), Postives = 28/52 (53.85%), Query Frame = -3
Query:  249 IFGSCKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKY-----ESTARSWT 389
            I+    +L SI SLL DPNP+ P   E A M+  +K +Y     E   +SWT
Sbjct:   99 IYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREVVEQSWT 150          
BLAST of CN186026 vs. ExPASy Swiss-Prot
Match: UBC13_SCHPO (Ubiquitin-conjugating enzyme E2 13 OS=Schizosaccharomyces pombe GN=ubc13 PE=1 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 2.525e-28
Identity = 47/109 (43.12%), Postives = 66/109 (60.55%), Query Frame = -1
Query:  434 KRI*RELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISK*WRTTLWSCTA 760
            KRI +E++ L +DPP    A P  +++ +++ T+ GP  S Y GG F + +  P +YP  PP V F TK++HPN++  G ICL  LK+ WSPAL I    RT L S  A
Sbjct:    5 KRIIKEIETLTRDPPPGIVAAPTEDNLRYFKITMEGPQQSAYEGGKFHLELFLPDEYPMMPPNVRFLTKIYHPNVDKLGRICLSTLKKDWSPALQI----RTVLLSIQA 109          

HSP 2 Score: 48.9062 bits (115), Expect = 2.525e-28
Identity = 22/46 (47.83%), Postives = 34/46 (73.91%), Query Frame = -3
Query:  234 VLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYAM 371
            VLLSI +L+  PNPDDPL  ++A ++K ++ +  + AR WT+KYA+
Sbjct:  103 VLLSIQALMGAPNPDDPLDNDVAKIWKENEPQAIANAREWTKKYAV 148          
BLAST of CN186026 vs. ExPASy Swiss-Prot
Match: UBC1_SCHPO (Ubiquitin-conjugating enzyme E2 1 OS=Schizosaccharomyces pombe GN=ubc1 PE=2 SV=2)

HSP 1 Score: 105.531 bits (262), Expect = 9.319e-28
Identity = 47/98 (47.96%), Postives = 66/98 (67.35%), Query Frame = -1
Query:  473 SKRI*RELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINS-NGSICLDILKEQWSPALTI 763
            S+RI +EL D+Q+D         + +D+ H +    GP  +PY GG F+V I  P DYPF+PPK+ F TK++HPN++S  G+ICLDILK+QWSP  T+
Sbjct:    6 SRRIAKELADVQQDKQAGIQVWTINDDISHLKGMFRGPEGTPYEGGYFVVDIEIPIDYPFRPPKMNFDTKIYHPNVSSQTGAICLDILKDQWSPVYTM 103          

HSP 2 Score: 39.2762 bits (90), Expect = 9.319e-28
Identity = 17/44 (38.64%), Postives = 26/44 (59.09%), Query Frame = -3
Query:  237 LLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYA 368
            L+S+ SLL  P P +P   ++A +Y  +  ++  TAR WT  YA
Sbjct:  107 LISLQSLLCTPEPSNPQDAQVAQVYLQNYQQFVRTAREWTSSYA 150          
BLAST of CN186026 vs. ExPASy Swiss-Prot
Match: UBC13_YEAST (Ubiquitin-conjugating enzyme E2 13 OS=Saccharomyces cerevisiae GN=UBC13 PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 9.426e-28
Identity = 51/109 (46.79%), Postives = 68/109 (62.39%), Query Frame = -1
Query:  434 KRI*RELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISK*WRTTLWSCTA 760
            KRI +E + L  DP    +A P  +++ ++Q TI GP  SPY  G+F + ++ P DYP + PKV F TK++HPNI+  G ICLD+LK  WSPAL I    RT L S  A
Sbjct:    6 KRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPNIDRLGRICLDVLKTNWSPALQI----RTVLLSIQA 110          

HSP 2 Score: 43.1282 bits (100), Expect = 9.426e-28
Identity = 20/45 (44.44%), Postives = 30/45 (66.67%), Query Frame = -3
Query:  237 VLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYA 371
            VLLSI +LL  PNP+DPL  ++A  +  ++   ++ AR WT+ YA
Sbjct:  104 VLLSIQALLASPNPNDPLANDVAEDWIKNEQGAKAKAREWTKLYA 148          
BLAST of CN186026 vs. ExPASy Swiss-Prot
Match: UBC1_YEAST (Ubiquitin-conjugating enzyme E2-24 kDa OS=Saccharomyces cerevisiae GN=UBC1 PE=1 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.678e-27
Identity = 49/99 (49.49%), Postives = 69/99 (69.70%), Query Frame = -1
Query:  473 SKRI*RELKDLQKDPPTSCSAGPVAE-DMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINS-NGSICLDILKEQWSPALTI 763
            +KRI +E++ ++ DP    +   V+E D+ H + T +GP  +PY GG F+V I  P +YPFKPPK+ F TKV+HPNI+S  G+ICLDILK  WSP +T+
Sbjct:    4 AKRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNISSVTGAICLDILKNAWSPVITL 102          

HSP 2 Score: 41.2022 bits (95), Expect = 2.678e-27
Identity = 18/44 (40.91%), Postives = 26/44 (59.09%), Query Frame = -3
Query:  237 LLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYA 368
            L+S+ +LL  P P+DP   E+A  Y  D+  +  TA  WT+ YA
Sbjct:  106 LISLQALLQSPEPNDPQDAEVAQHYLRDRESFNKTAALWTRLYA 149          
BLAST of CN186026 vs. ExPASy Swiss-Prot
Match: UBC2_ASPFU (Ubiquitin-conjugating enzyme E2 2 OS=Aspergillus fumigatus GN=ubc2 PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 5.980e-27
Identity = 44/99 (44.44%), Postives = 66/99 (66.67%), Query Frame = -1
Query:  470 ASKRI*RELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTIS 766
            A +R+ R+ K +Q DPP   SA PVA+++  W A I+GP+D+P+  G F + +HF   YP KPP V F +++FHPN+   G +CLDIL+ +WSP   ++
Sbjct:    5 ARRRLMRDFKRMQTDPPAGVSASPVADNVMTWNAVIIGPADTPFEDGTFRLVMHFEEQYPNKPPGVKFISQMFHPNVYGTGELCLDILQNRWSPTYDVA 103          

HSP 2 Score: 34.6538 bits (78), Expect = 5.980e-27
Identity = 17/45 (37.78%), Postives = 26/45 (57.78%), Query Frame = -3
Query:  252 VLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKY-----ESTARSW 371
            +L SI SLL DPN   P   E +++YK ++ +Y     E+  +SW
Sbjct:  105 ILTSIQSLLNDPNTSSPANVEASNLYKDNRKEYIKRVRETVEKSW 149          
BLAST of CN186026 vs. ExPASy Swiss-Prot
Match: UBC2_TRIHA (Ubiquitin-conjugating enzyme E2 2 OS=Trichoderma harzianum GN=UBC2 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 7.785e-27
Identity = 42/99 (42.42%), Postives = 67/99 (67.68%), Query Frame = -1
Query:  470 ASKRI*RELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTIS 766
            A +R+ R+ K +Q DPP   SA P+ +++  W A I+GP+D+P+  G F + + F   YP KPP+V F +++FHPN+ +NG +CLDIL+ +WSP   ++
Sbjct:    5 ARRRLMRDFKRMQTDPPAGVSASPIPDNVMTWNAVIIGPADTPFEDGTFRLVMQFEEQYPNKPPQVKFISQMFHPNVYANGELCLDILQNRWSPTYDVA 103          

HSP 2 Score: 35.8094 bits (81), Expect = 7.785e-27
Identity = 19/45 (42.22%), Postives = 26/45 (57.78%), Query Frame = -3
Query:  252 VLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKY-----ESTARSW 371
            VL SI SLL DPN   P   E +++YK ++ +Y     E+  RSW
Sbjct:  105 VLTSIQSLLNDPNTGSPANVEASNLYKDNRREYIKRVRETVERSW 149          
BLAST of CN186026 vs. ExPASy Swiss-Prot
Match: UBC2_EMENI (Ubiquitin-conjugating enzyme E2 2 OS=Emericella nidulans GN=uvsJ PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 1.014e-26
Identity = 44/99 (44.44%), Postives = 66/99 (66.67%), Query Frame = -1
Query:  470 ASKRI*RELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTIS 766
            A +R+ R+ K +Q DPP   SA PVA+++  W A I+GP+D+P+  G F + +HF   YP KPP V F +++FHPN+   G +CLDIL+ +WSP   ++
Sbjct:    5 ARRRLMRDFKRMQTDPPAGVSASPVADNVMTWNAVIIGPADTPFEDGTFRLVMHFEEQYPNKPPGVKFISQMFHPNVYGTGELCLDILQNRWSPTYDVA 103          

HSP 2 Score: 33.8834 bits (76), Expect = 1.014e-26
Identity = 16/47 (34.04%), Postives = 27/47 (57.45%), Query Frame = -3
Query:  246 VLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKY-----ESTARSWTQ 371
            +L SI SLL DPN   P   E +++Y+ ++ +Y     E+  +SW +
Sbjct:  105 ILTSIQSLLNDPNTSSPANVEASNLYRDNRKEYIKRVRETVEKSWEE 151          
The following BLAST results are available for this feature:
BLAST of CN186026 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 245
Match NameE-valueIdentityDescription
UBC2_ARATH8.776e-2948.48Ubiquitin-conjugating enzyme E2 2 OS=Arabidopsis t... [more]
UBCD6_DROME1.143e-2848.48Ubiquitin-conjugating enzyme E2-17 kDa OS=Drosophi... [more]
UBC2_MEDSA1.143e-2848.48Ubiquitin-conjugating enzyme E2 2 OS=Medicago sati... [more]
UBC13_SCHPO2.525e-2843.12Ubiquitin-conjugating enzyme E2 13 OS=Schizosaccha... [more]
UBC1_SCHPO9.319e-2847.96Ubiquitin-conjugating enzyme E2 1 OS=Schizosacchar... [more]
UBC13_YEAST9.426e-2846.79Ubiquitin-conjugating enzyme E2 13 OS=Saccharomyce... [more]
UBC1_YEAST2.678e-2749.49Ubiquitin-conjugating enzyme E2-24 kDa OS=Saccharo... [more]
UBC2_ASPFU5.980e-2744.44Ubiquitin-conjugating enzyme E2 2 OS=Aspergillus f... [more]
UBC2_TRIHA7.785e-2742.42Ubiquitin-conjugating enzyme E2 2 OS=Trichoderma h... [more]
UBC2_EMENI1.014e-2644.44Ubiquitin-conjugating enzyme E2 2 OS=Emericella ni... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0002D24_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002D24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186026 ID=CN186026; Name=CN186026; organism=Citrus sinensis; type=EST; length=775bp
TTTTTTTTTTTTTTTTTACTTAAGACCATTAACTACGTTCCATCGAAGAA
GCTTCAAACACAAACATTCAACATTAACATAAAAACGTCCCGCCCTTGCA
ACTCCTCCCAACACCATTCTAAAACACCAACGTCTGCCCTCCCCAAAGCA
AGTTAAAGAAAATAGATAGACAACACACACAACATATTTCAATAAATGCT
CCTTTTTCTGCAATATCCTAACAACCTTCATCCCATGGCATACTTCTGTG
TCCAGCTCCTGGCCGTGGATTCATATTTGGCCTTGTCGGACTTGTACATG
TGGGCAATCTCCGGTACAAGAGGGTCGTCGGGATTTGGATCAGTAAGCAA
GGAGCAGATAGAGAGCAGGACTTTGCAAGATCCAAAGATGCACTTGGGAG
TACAACTTTATGATCCCAGGGTCAGTTTTACCTGGCTGTGCAAGACCAGA
GAGTTGTACGCCACTACTTTGAAATGGTAAGCGCTGGACTCCACTGTTCT
TTAAGGATATCAAGACAGATGCTTCCATTGCTGTTGATGTTCGGGTGGAA
GACCTTGGTCCTAAAAGCAACCTTTGGGGGCTTGAAAGGATAATCAGGAG
GAAAATGAATGGTAACTAAAAATACACCTCCTGCATATGGGCTATCAGAA
GGGCCCATAATTGTTGCTTGCCAGTGGAACATGTCTTCAGCCACAGGGCC
AGCGCTGCAAGACGTGGGAGGATCCTTCTGCAAATCCTTGAGTTCCCTTC
AAATACGCTTTGAAGCCATGACTCT
back to top