CN186026

Overview
NameCN186026
Unique NameCN186026
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length775
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN186026 vs. ExPASy Swiss-Prot
Match: UBE2K_BOVIN (Ubiquitin-conjugating enzyme E2 K OS=Bos taurus GN=UBE2K PE=1 SV=3)

HSP 1 Score: 92.8189 bits (229), Expect = 2.543e-24
Identity = 53/116 (45.69%), Postives = 70/116 (60.34%), Query Frame = -1
Query:  434 MASKRI*RELKDLQKDPPTS---CSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINS-NGSICLDILKEQWSPALTISK*WRTTLWSCTA 769
            +A +RI RE K++ K   TS        V E+    +  I GP D+PY GG + + I  P  YPF PPKV F TK++HPNI+S  G+ICLDILK+QW+ A+T+    RT L S  A
Sbjct:    4 IAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTL----RTVLLSLQA 115          

HSP 2 Score: 40.4318 bits (93), Expect = 2.543e-24
Identity = 19/45 (42.22%), Postives = 26/45 (57.78%), Query Frame = -3
Query:  237 VLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYA 371
            VLLS+ +LL    PDDP    +A+ YK +   ++ TAR W   YA
Sbjct:  109 VLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVYA 153          
BLAST of CN186026 vs. ExPASy Swiss-Prot
Match: UBE2T_BOVIN (Ubiquitin-conjugating enzyme E2 T OS=Bos taurus GN=UBE2T PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 9.498e-24
Identity = 44/112 (39.29%), Postives = 66/112 (58.93%), Query Frame = -1
Query:  440 SKRI*RELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL----KEQWSPALTISK*WRTTLWSC 763
            + R+ REL  L  +PP   +     + M   +A I+G +++PY  GVF + +H P  YPF+PP++ F T ++HPNI+S G ICLD+L    K  W P+L I+     TL +C
Sbjct:    4 TSRLKRELSLLAAEPPPGITCWQDGDRMEDLRAQILGGANTPYEKGVFKLEVHIPERYPFEPPQIRFLTPIYHPNIDSAGRICLDVLKLPPKGAWRPSLNIA-----TLLTC 110          

HSP 2 Score: 45.4394 bits (106), Expect = 9.498e-24
Identity = 19/45 (42.22%), Postives = 30/45 (66.67%), Query Frame = -3
Query:  237 VLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYA 371
            +L  I  L+ +PNPDDPL+ +I+  +K +K  +   AR WT+K+A
Sbjct:  107 LLTCIQQLMAEPNPDDPLMADISSEFKYNKPVFFKNARQWTEKHA 151          
BLAST of CN186026 vs. ExPASy Swiss-Prot
Match: UBE2T_HUMAN (Ubiquitin-conjugating enzyme E2 T OS=Homo sapiens GN=UBE2T PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.093e-23
Identity = 40/102 (39.22%), Postives = 61/102 (59.80%), Query Frame = -1
Query:  470 SKRI*RELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL----KEQWSPALTIS 763
            + R+ REL  L  +PP   +     + M   +A I+G +++PY  GVF + +  P  YPF+PP++ F T ++HPNI+S G ICLD+L    K  W P+L I+
Sbjct:    4 ASRLKRELHMLATEPPPGITCWQDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPERYPFEPPQIRFLTPIYHPNIDSAGRICLDVLKLPPKGAWRPSLNIA 105          

HSP 2 Score: 48.521 bits (114), Expect = 2.093e-23
Identity = 21/45 (46.67%), Postives = 32/45 (71.11%), Query Frame = -3
Query:  237 VLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYA 371
            VL SI  L+++PNPDDPL+ +I+  +K +K  +   AR WT+K+A
Sbjct:  107 VLTSIQLLMSEPNPDDPLMADISSEFKYNKPAFLKNARQWTEKHA 151          
BLAST of CN186026 vs. ExPASy Swiss-Prot
Match: UBC2_CRYNE (Ubiquitin-conjugating enzyme E2 2 OS=Cryptococcus neoformans GN=UBC2 PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 6.035e-23
Identity = 42/99 (42.42%), Postives = 61/99 (61.62%), Query Frame = -1
Query:  470 ASKRI*RELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTIS 766
            A +R+ R+ K L  D P   S  P  +++  W A I GP ++P+  G F +T+ F   YP KPP V F +K+FHPNI +NG +CLDIL+ +WSP   ++
Sbjct:    5 AKRRLIRDFKRLTSDAPIGISGSPNPDNIMVWNAVIFGPPETPFEDGSFRLTLTFTDAYPNKPPTVRFISKMFHPNIYANGELCLDILQNRWSPTYDVA 103          

HSP 2 Score: 32.7278 bits (73), Expect = 6.035e-23
Identity = 14/34 (41.18%), Postives = 21/34 (61.76%), Query Frame = -3
Query:  270 VLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYE 371
            +L S+ SLL DPNP  P   + A ++K +  +YE
Sbjct:  105 ILTSVQSLLNDPNPASPANVDAAQLFKENLKEYE 138          
BLAST of CN186026 vs. ExPASy Swiss-Prot
Match: UBE2C_DICDI (Probable ubiquitin-conjugating enzyme E2 C OS=Dictyostelium discoideum GN=ube2c PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 7.889e-23
Identity = 45/97 (46.39%), Postives = 64/97 (65.98%), Query Frame = -1
Query:  473 SKRI*RELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTI 763
            SKR+  EL +L   P    SA P  +++F+W  TI G  D+ Y    F +++ FP DYP+KPP V F T+ FHPN+++NG+ICLDILK++WSP   +
Sbjct:    8 SKRLQSELMNLMMGPSPGISAFPDGDNIFNWIGTIQGAKDTVYEQMEFKMSLKFPTDYPYKPPTVKFETQCFHPNVDNNGNICLDILKDKWSPVYNV 104          

HSP 2 Score: 25.7942 bits (55), Expect = 7.889e-23
Identity = 16/52 (30.77%), Postives = 27/52 (51.92%), Query Frame = -3
Query:  258 IFGSCKVLLSICSLLTDPNPDDPLVPEIAHMYKS--------DKAKYESTAR 389
            ++    +L+SI SLL +PN + PL    A ++ +        DK   E+T+R
Sbjct:  101 VYNVRSLLISIQSLLGEPNNESPLNSYAASLWSNQDEYKKVLDKRYQEATSR 152          
BLAST of CN186026 vs. ExPASy Swiss-Prot
Match: UBE2T_MOUSE (Ubiquitin-conjugating enzyme E2 T OS=Mus musculus GN=Ube2t PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 4.924e-22
Identity = 40/102 (39.22%), Postives = 62/102 (60.78%), Query Frame = -1
Query:  470 SKRI*RELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL----KEQWSPALTIS 763
            + R+ +EL  L  +PP   +     + +   +A I+G +++PY  GVF + +  P  YPF+PP+V F T ++HPNI+S+G ICLDIL    K  W P+L I+
Sbjct:    4 ASRLKKELHMLAIEPPPGITCWQEKDQVADLRAQILGGANTPYEKGVFTLEVIIPERYPFEPPQVRFLTPIYHPNIDSSGRICLDILKLPPKGAWRPSLNIA 105          

HSP 2 Score: 44.2838 bits (103), Expect = 4.924e-22
Identity = 19/45 (42.22%), Postives = 30/45 (66.67%), Query Frame = -3
Query:  237 VLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYA 371
            VL SI  L+ +PNPDDPL+ +I+  +K +K  +   A+ WT+ +A
Sbjct:  107 VLTSIQLLMAEPNPDDPLMADISSEFKYNKIAFLKKAKQWTEAHA 151          
BLAST of CN186026 vs. ExPASy Swiss-Prot
Match: UBCD4_DROME (Ubiquitin-conjugating enzyme E2-22 kDa OS=Drosophila melanogaster GN=UbcD4 PE=1 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 4.929e-22
Identity = 50/116 (43.10%), Postives = 67/116 (57.76%), Query Frame = -1
Query:  434 MASKRI*RELKDLQKDPPT---SCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINS-NGSICLDILKEQWSPALTISK*WRTTLWSCTA 769
            MA  RI RE K++ +       S     V +     +  I GP D+PY GG F++ I  P  YPF PPKV F T+++HPNI+S  G+ICLDILK+ W+ A+T+    RT L S  A
Sbjct:    4 MAVSRIKREFKEVMRSEEIVQCSIKIELVNDSWTELRGEIAGPPDTPYEGGKFVLEIKVPETYPFNPPKVRFITRIWHPNISSVTGAICLDILKDNWAAAMTL----RTVLLSLQA 115          

HSP 2 Score: 37.7354 bits (86), Expect = 4.929e-22
Identity = 19/47 (40.43%), Postives = 26/47 (55.32%), Query Frame = -3
Query:  231 VLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYAMG 371
            VLLS+ +LL    PDDP    +A+ +K     +  TA+ WT  YA G
Sbjct:  109 VLLSLQALLAAAEPDDPQDAVVAYQFKDKYDLFLLTAKHWTNAYAGG 155          
BLAST of CN186026 vs. ExPASy Swiss-Prot
Match: UBC37_ARATH (Probable ubiquitin carrier protein E2 37 OS=Arabidopsis thaliana GN=UBC37 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.066e-21
Identity = 48/111 (43.24%), Postives = 63/111 (56.76%), Query Frame = -1
Query:  470 SKRI*RELKDLQKDPPTSCS------AGPVAEDMFHWQ---ATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL----KEQWSPALTIS 763
            S R+ +ELK L  DPP   S      A   + D   +    A I GP D+ YA G+F + I  P  YPF+PP V+F T ++HPNI+++G ICLDIL    K  W P+L IS
Sbjct:    8 SLRMQKELKLLLSDPPHGASFPHLSSAANGSGDFSTFSTIDAQIEGPEDTVYANGIFNLKIQIPERYPFQPPIVSFATPIYHPNIDNSGRICLDILNLPPKGAWQPSLNIS 118          

HSP 2 Score: 43.5134 bits (101), Expect = 1.066e-21
Identity = 20/45 (44.44%), Postives = 31/45 (68.89%), Query Frame = -3
Query:  237 VLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYA 371
            VL S+  LL++PNPDD L+ E++  YK ++  ++  AR  T+KYA
Sbjct:  120 VLTSMRLLLSEPNPDDGLMCEVSREYKYNRQTFDYKAREMTEKYA 164          
BLAST of CN186026 vs. ExPASy Swiss-Prot
Match: UB2L3_MOUSE (Ubiquitin-conjugating enzyme E2 L3 OS=Mus musculus GN=Ube2l3 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.097e-21
Identity = 40/97 (41.24%), Postives = 63/97 (64.95%), Query Frame = -1
Query:  482 ASKRI*RELKDLQKDPPTSCSAGPVAE-DMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILK-EQWSPA 766
            AS+R+ +EL++++K    +     V E ++  WQ  I+ P + PY  G F + I+FP +YPFKPPK+ F+TK++HPNI+  G +CL ++  E W PA
Sbjct:    3 ASRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIV-PDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDEKGQVCLPVISAENWKPA 98          

HSP 2 Score: 39.6614 bits (91), Expect = 1.097e-21
Identity = 16/45 (35.56%), Postives = 28/45 (62.22%), Query Frame = -3
Query:  240 KVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKY 374
            +V+ S+ +L+ DP P+ PL  ++A  Y  D+ K+   A  +T+KY
Sbjct:  103 QVIQSLIALVNDPQPEHPLRADLAEEYSKDRKKFCKNAEEFTKKY 147          
BLAST of CN186026 vs. ExPASy Swiss-Prot
Match: UB2L3_HUMAN (Ubiquitin-conjugating enzyme E2 L3 OS=Homo sapiens GN=UBE2L3 PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.097e-21
Identity = 40/97 (41.24%), Postives = 63/97 (64.95%), Query Frame = -1
Query:  482 ASKRI*RELKDLQKDPPTSCSAGPVAE-DMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILK-EQWSPA 766
            AS+R+ +EL++++K    +     V E ++  WQ  I+ P + PY  G F + I+FP +YPFKPPK+ F+TK++HPNI+  G +CL ++  E W PA
Sbjct:    3 ASRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIV-PDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDEKGQVCLPVISAENWKPA 98          

HSP 2 Score: 39.6614 bits (91), Expect = 1.097e-21
Identity = 16/45 (35.56%), Postives = 28/45 (62.22%), Query Frame = -3
Query:  240 KVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKY 374
            +V+ S+ +L+ DP P+ PL  ++A  Y  D+ K+   A  +T+KY
Sbjct:  103 QVIQSLIALVNDPQPEHPLRADLAEEYSKDRKKFCKNAEEFTKKY 147          
The following BLAST results are available for this feature:
BLAST of CN186026 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 245
Match NameE-valueIdentityDescription
UBE2K_BOVIN2.543e-2445.69Ubiquitin-conjugating enzyme E2 K OS=Bos taurus GN... [more]
UBE2T_BOVIN9.498e-2439.29Ubiquitin-conjugating enzyme E2 T OS=Bos taurus GN... [more]
UBE2T_HUMAN2.093e-2339.22Ubiquitin-conjugating enzyme E2 T OS=Homo sapiens ... [more]
UBC2_CRYNE6.035e-2342.42Ubiquitin-conjugating enzyme E2 2 OS=Cryptococcus ... [more]
UBE2C_DICDI7.889e-2346.39Probable ubiquitin-conjugating enzyme E2 C OS=Dict... [more]
UBE2T_MOUSE4.924e-2239.22Ubiquitin-conjugating enzyme E2 T OS=Mus musculus ... [more]
UBCD4_DROME4.929e-2243.10Ubiquitin-conjugating enzyme E2-22 kDa OS=Drosophi... [more]
UBC37_ARATH1.066e-2143.24Probable ubiquitin carrier protein E2 37 OS=Arabid... [more]
UB2L3_MOUSE1.097e-2141.24Ubiquitin-conjugating enzyme E2 L3 OS=Mus musculus... [more]
UB2L3_HUMAN1.097e-2141.24Ubiquitin-conjugating enzyme E2 L3 OS=Homo sapiens... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002D24_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002D24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186026 ID=CN186026; Name=CN186026; organism=Citrus sinensis; type=EST; length=775bp
TTTTTTTTTTTTTTTTTACTTAAGACCATTAACTACGTTCCATCGAAGAA
GCTTCAAACACAAACATTCAACATTAACATAAAAACGTCCCGCCCTTGCA
ACTCCTCCCAACACCATTCTAAAACACCAACGTCTGCCCTCCCCAAAGCA
AGTTAAAGAAAATAGATAGACAACACACACAACATATTTCAATAAATGCT
CCTTTTTCTGCAATATCCTAACAACCTTCATCCCATGGCATACTTCTGTG
TCCAGCTCCTGGCCGTGGATTCATATTTGGCCTTGTCGGACTTGTACATG
TGGGCAATCTCCGGTACAAGAGGGTCGTCGGGATTTGGATCAGTAAGCAA
GGAGCAGATAGAGAGCAGGACTTTGCAAGATCCAAAGATGCACTTGGGAG
TACAACTTTATGATCCCAGGGTCAGTTTTACCTGGCTGTGCAAGACCAGA
GAGTTGTACGCCACTACTTTGAAATGGTAAGCGCTGGACTCCACTGTTCT
TTAAGGATATCAAGACAGATGCTTCCATTGCTGTTGATGTTCGGGTGGAA
GACCTTGGTCCTAAAAGCAACCTTTGGGGGCTTGAAAGGATAATCAGGAG
GAAAATGAATGGTAACTAAAAATACACCTCCTGCATATGGGCTATCAGAA
GGGCCCATAATTGTTGCTTGCCAGTGGAACATGTCTTCAGCCACAGGGCC
AGCGCTGCAAGACGTGGGAGGATCCTTCTGCAAATCCTTGAGTTCCCTTC
AAATACGCTTTGAAGCCATGACTCT
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