CN186023

Overview
NameCN186023
Unique NameCN186023
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length790
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN186023 vs. ExPASy Swiss-Prot
Match: CYB2_HANAN (Cytochrome b2, mitochondrial OS=Hansenula anomala GN=CYB2 PE=1 SV=2)

HSP 1 Score: 147.132 bits (370), Expect = 1.026e-34
Identity = 71/146 (48.63%), Postives = 103/146 (70.55%), Query Frame = -2
Query:  244 MDASLSWKDLEWLRSITNLPILIKGILTREDAIKAVEVGVAGIIVSNHGARQLDYSPATISALEEVVHAVKGR-----VPILMDGGVRRGTDVFKALALGAQAVLIGRPVVYGLAAKGEYGVRRVIEMLKDEFELTMALTGCPRCE 666
            +D SLSWKD+ +++SIT +PI+IKG+  +ED + A E G+ G+++SNHG RQLDY+ A +  L EV+  +K R     + I +DGGVRRGTDV KAL LGA+ V +GRP +Y +++ G+ GV + I++LKDE E+ M L G  + E
Sbjct:  385 IDPSLSWKDIAFIKSITKMPIVIKGVQRKEDVLLAAEHGLQGVVLSNHGGRQLDYTRAPVEVLAEVMPILKERGLDQKIDIFVDGGVRRGTDVLKALCLGAKGVGLGRPFLYAMSSYGDKGVTKAIQLLKDEIEMNMRLLGVNKIE 530          
BLAST of CN186023 vs. ExPASy Swiss-Prot
Match: CYB2_YEAST (Cytochrome b2, mitochondrial OS=Saccharomyces cerevisiae GN=CYB2 PE=1 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 3.898e-34
Identity = 79/182 (43.41%), Postives = 114/182 (62.64%), Query Frame = -2
Query:  259 RREADIKNKMITPPLKNLEGLLSTKVSSDTGSNFEADANETMDASLSWKDLEWLRSITNLPILIKGILTREDAIKAVEVGVAGIIVSNHGARQLDYSPATISALEEVV-----HAVKGRVPILMDGGVRRGTDVFKALALGAQAVLIGRPVVYGLAAKGEYGVRRVIEMLKDEFELTMALTG 789
            +RE D+K K         + +  T V    G++     ++ +D SL+WKD+E L+  T LPI+IKG+   ED IKA E+GV+G+++SNHG RQLD+S A I  L E +       +K ++ + +DGGVRRGTDV KAL LGA+ V +GRP +Y  +  G  GV + IE+L+DE E++M L G
Sbjct:  368 QREKDMKLKFSNTKA-GPKAMKKTNVEESQGAS--RALSKFIDPSLTWKDIEELKKKTKLPIVIKGVQRTEDVIKAAEIGVSGVVLSNHGGRQLDFSRAPIEVLAETMPILEQRNLKDKLEVFVDGGVRRGTDVLKALCLGAKGVGLGRPFLYANSCYGRNGVEKAIEILRDEIEMSMRLLG 546          
BLAST of CN186023 vs. ExPASy Swiss-Prot
Match: LLDD_PSEA7 (L-lactate dehydrogenase [cytochrome] OS=Pseudomonas aeruginosa (strain PA7) GN=lldD PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 5.091e-34
Identity = 77/159 (48.43%), Postives = 102/159 (64.15%), Query Frame = -2
Query:  259 GLLSTKVSSDTG-SNFEADANETMDASLSWKDLEWLRSITNLPILIKGILTREDAIKAVEVGVAGIIVSNHGARQLDYSPATISALEEVVHAVKGRVPILMDGGVRRGTDVFKALALGAQAVLIGRPVVYGLAAKGEYGVRRVIEMLKDEFELTMALTG 732
            G +ST   + TG  ++        D S+SWKDLEW+R   N P++IKGIL  EDA  AV+ G  GI+VSNHG RQLD   ++  AL  +  AVKG + IL D G+R G DV + +ALGA +VL+GR  VY LAA GE GVR ++E+++ E  + M LTG
Sbjct:  205 GNISTYRGNPTGLEDYIGWLGANFDPSISWKDLEWIREFWNGPMVIKGILDPEDAKDAVKFGADGIVVSNHGGRQLDGVLSSARALPAIADAVKGELAILADSGIRTGLDVVRMIALGADSVLLGRAFVYALAAAGEAGVRNLLELIEKEMRVAMVLTG 363          
BLAST of CN186023 vs. ExPASy Swiss-Prot
Match: LLDD_PSEAE (L-lactate dehydrogenase [cytochrome] OS=Pseudomonas aeruginosa GN=lldD PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 4.310e-33
Identity = 71/135 (52.59%), Postives = 93/135 (68.89%), Query Frame = -2
Query:  259 DASLSWKDLEWLRSITNLPILIKGILTREDAIKAVEVGVAGIIVSNHGARQLDYSPATISALEEVVHAVKGRVPILMDGGVRRGTDVFKALALGAQAVLIGRPVVYGLAAKGEYGVRRVIEMLKDEFELTMALTG 663
            D S+SWKDLEW+R   + P++IKGIL  EDA  AV+ G  GI+VSNHG RQLD   ++  AL  +  AVKG + IL D G+R G DV + +ALGA +VL+GR  VY LAA GE GVR ++E+++ E  + M LTG
Sbjct:  229 DPSISWKDLEWIREFWDGPMVIKGILDPEDARDAVKFGADGIVVSNHGGRQLDGVLSSARALPAIADAVKGELAILADSGIRTGLDVVRMIALGADSVLLGRAFVYALAAAGEAGVRNLLELIEKEMRVAMVLTG 363          
BLAST of CN186023 vs. ExPASy Swiss-Prot
Match: LLDD_PSEA8 (L-lactate dehydrogenase [cytochrome] OS=Pseudomonas aeruginosa (strain LESB58) GN=lldD PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 4.310e-33
Identity = 71/135 (52.59%), Postives = 93/135 (68.89%), Query Frame = -2
Query:  259 DASLSWKDLEWLRSITNLPILIKGILTREDAIKAVEVGVAGIIVSNHGARQLDYSPATISALEEVVHAVKGRVPILMDGGVRRGTDVFKALALGAQAVLIGRPVVYGLAAKGEYGVRRVIEMLKDEFELTMALTG 663
            D S+SWKDLEW+R   + P++IKGIL  EDA  AV+ G  GI+VSNHG RQLD   ++  AL  +  AVKG + IL D G+R G DV + +ALGA +VL+GR  VY LAA GE GVR ++E+++ E  + M LTG
Sbjct:  229 DPSISWKDLEWIREFWDGPMVIKGILDPEDARDAVKFGADGIVVSNHGGRQLDGVLSSARALPAIADAVKGELAILADSGIRTGLDVVRMIALGADSVLLGRAFVYALAAAGEAGVRNLLELIEKEMRVAMVLTG 363          
BLAST of CN186023 vs. ExPASy Swiss-Prot
Match: LLDD_YERPY (L-lactate dehydrogenase [cytochrome] OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=lldD PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 7.352e-33
Identity = 73/153 (47.71%), Postives = 96/153 (62.75%), Query Frame = -2
Query:  205 DASLSWKDLEWLRSITNLPILIKGILTREDAIKAVEVGVAGIIVSNHGARQLDYSPATISALEEVVHAVKGRVPILMDGGVRRGTDVFKALALGAQAVLIGRPVVYGLAAKGEYGVRRVIEMLKDEFELTMALTGCPRCETYYQEDM*EPERG 663
            D S+SWKDLEW+R     P++IKGIL  EDA  AV+ G  GI+VSNHG RQLD   +T  AL  +  AVKG + IL D G+R G DV + +ALGA +VL+GR  VY LA  GE GV  ++ +++ E  + M LTG  R     ++ +   ERG
Sbjct:  229 DPSISWKDLEWVREFWQGPMIIKGILDPEDAKDAVKFGADGIVVSNHGGRQLDGVLSTARALPAIADAVKGDITILADSGIRTGLDVVRMIALGADSVLLGRAFVYALATAGEAGVINLLTLIEQEMRVAMTLTGAKRIADINRDSLAVSERG 381          
BLAST of CN186023 vs. ExPASy Swiss-Prot
Match: LLDD_YERPS (L-lactate dehydrogenase [cytochrome] OS=Yersinia pseudotuberculosis GN=lldD PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 7.352e-33
Identity = 73/153 (47.71%), Postives = 96/153 (62.75%), Query Frame = -2
Query:  205 DASLSWKDLEWLRSITNLPILIKGILTREDAIKAVEVGVAGIIVSNHGARQLDYSPATISALEEVVHAVKGRVPILMDGGVRRGTDVFKALALGAQAVLIGRPVVYGLAAKGEYGVRRVIEMLKDEFELTMALTGCPRCETYYQEDM*EPERG 663
            D S+SWKDLEW+R     P++IKGIL  EDA  AV+ G  GI+VSNHG RQLD   +T  AL  +  AVKG + IL D G+R G DV + +ALGA +VL+GR  VY LA  GE GV  ++ +++ E  + M LTG  R     ++ +   ERG
Sbjct:  229 DPSISWKDLEWVREFWQGPMIIKGILDPEDAKDAVKFGADGIVVSNHGGRQLDGVLSTARALPAIADAVKGDITILADSGIRTGLDVVRMIALGADSVLLGRAFVYALATAGEAGVINLLTLIEQEMRVAMTLTGAKRIADINRDSLAVSERG 381          
BLAST of CN186023 vs. ExPASy Swiss-Prot
Match: LLDD_YERPP (L-lactate dehydrogenase [cytochrome] OS=Yersinia pestis (strain Pestoides F) GN=lldD PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 7.352e-33
Identity = 73/153 (47.71%), Postives = 96/153 (62.75%), Query Frame = -2
Query:  205 DASLSWKDLEWLRSITNLPILIKGILTREDAIKAVEVGVAGIIVSNHGARQLDYSPATISALEEVVHAVKGRVPILMDGGVRRGTDVFKALALGAQAVLIGRPVVYGLAAKGEYGVRRVIEMLKDEFELTMALTGCPRCETYYQEDM*EPERG 663
            D S+SWKDLEW+R     P++IKGIL  EDA  AV+ G  GI+VSNHG RQLD   +T  AL  +  AVKG + IL D G+R G DV + +ALGA +VL+GR  VY LA  GE GV  ++ +++ E  + M LTG  R     ++ +   ERG
Sbjct:  229 DPSISWKDLEWVREFWQGPMIIKGILDPEDAKDAVKFGADGIVVSNHGGRQLDGVLSTARALPAIADAVKGDITILADSGIRTGLDVVRMIALGADSVLLGRAFVYALATAGEAGVINLLTLIEQEMRVAMTLTGAKRIADINRDSLAVSERG 381          
BLAST of CN186023 vs. ExPASy Swiss-Prot
Match: LLDD_YERPN (L-lactate dehydrogenase [cytochrome] OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=lldD PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 7.352e-33
Identity = 73/153 (47.71%), Postives = 96/153 (62.75%), Query Frame = -2
Query:  205 DASLSWKDLEWLRSITNLPILIKGILTREDAIKAVEVGVAGIIVSNHGARQLDYSPATISALEEVVHAVKGRVPILMDGGVRRGTDVFKALALGAQAVLIGRPVVYGLAAKGEYGVRRVIEMLKDEFELTMALTGCPRCETYYQEDM*EPERG 663
            D S+SWKDLEW+R     P++IKGIL  EDA  AV+ G  GI+VSNHG RQLD   +T  AL  +  AVKG + IL D G+R G DV + +ALGA +VL+GR  VY LA  GE GV  ++ +++ E  + M LTG  R     ++ +   ERG
Sbjct:  229 DPSISWKDLEWVREFWQGPMIIKGILDPEDAKDAVKFGADGIVVSNHGGRQLDGVLSTARALPAIADAVKGDITILADSGIRTGLDVVRMIALGADSVLLGRAFVYALATAGEAGVINLLTLIEQEMRVAMTLTGAKRIADINRDSLAVSERG 381          
BLAST of CN186023 vs. ExPASy Swiss-Prot
Match: LLDD_YERPG (L-lactate dehydrogenase [cytochrome] OS=Yersinia pestis bv. Antiqua (strain Angola) GN=lldD PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 7.352e-33
Identity = 73/153 (47.71%), Postives = 96/153 (62.75%), Query Frame = -2
Query:  205 DASLSWKDLEWLRSITNLPILIKGILTREDAIKAVEVGVAGIIVSNHGARQLDYSPATISALEEVVHAVKGRVPILMDGGVRRGTDVFKALALGAQAVLIGRPVVYGLAAKGEYGVRRVIEMLKDEFELTMALTGCPRCETYYQEDM*EPERG 663
            D S+SWKDLEW+R     P++IKGIL  EDA  AV+ G  GI+VSNHG RQLD   +T  AL  +  AVKG + IL D G+R G DV + +ALGA +VL+GR  VY LA  GE GV  ++ +++ E  + M LTG  R     ++ +   ERG
Sbjct:  229 DPSISWKDLEWVREFWQGPMIIKGILDPEDAKDAVKFGADGIVVSNHGGRQLDGVLSTARALPAIADAVKGDITILADSGIRTGLDVVRMIALGADSVLLGRAFVYALATAGEAGVINLLTLIEQEMRVAMTLTGAKRIADINRDSLAVSERG 381          
The following BLAST results are available for this feature:
BLAST of CN186023 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 127
Match NameE-valueIdentityDescription
CYB2_HANAN1.026e-3448.63Cytochrome b2, mitochondrial OS=Hansenula anomala ... [more]
CYB2_YEAST3.898e-3443.41Cytochrome b2, mitochondrial OS=Saccharomyces cere... [more]
LLDD_PSEA75.091e-3448.43L-lactate dehydrogenase [cytochrome] OS=Pseudomona... [more]
LLDD_PSEAE4.310e-3352.59L-lactate dehydrogenase [cytochrome] OS=Pseudomona... [more]
LLDD_PSEA84.310e-3352.59L-lactate dehydrogenase [cytochrome] OS=Pseudomona... [more]
LLDD_YERPY7.352e-3347.71L-lactate dehydrogenase [cytochrome] OS=Yersinia p... [more]
LLDD_YERPS7.352e-3347.71L-lactate dehydrogenase [cytochrome] OS=Yersinia p... [more]
LLDD_YERPP7.352e-3347.71L-lactate dehydrogenase [cytochrome] OS=Yersinia p... [more]
LLDD_YERPN7.352e-3347.71L-lactate dehydrogenase [cytochrome] OS=Yersinia p... [more]
LLDD_YERPG7.352e-3347.71L-lactate dehydrogenase [cytochrome] OS=Yersinia p... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002D23_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002D23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186023 ID=CN186023; Name=CN186023; organism=Citrus sinensis; type=EST; length=790bp
TTTTTTTTTTTTTTTTTACCAAATGGTTGTATAATATCCCTTTTAGATTC
AATACCTAATACACATACAAANATAATACAAATACCACTTGTTATTAAAN
ATAATACACATACAACACTAATATATATAGAGTGGTGTCAAAACGCACCC
CTTAAACATTTCTTGCAACACCAATAATATTTACACGCATCGAATGGGAT
TCTCTCCTCGCTCAGGTTCTCACATGTCTTCCTGGTAATATGTTTCACAC
CTAGGACAGCCAGTAAGGGCCATGGTCAACTCAAACTCATCCTTCAGCAT
TTCGATGACGCGTCTCACCCCATATTCCCCTTTTGCAGCAAGGCCGTAGA
CTACAGGCCTTCCAATAAGTACAGCTTGTGCACCGAGGGCCAATGCCTTG
AAAACATCTGTTCCTCGCCGCACTCCTCCATCCATAAGAATTGGAACTCT
TCCTTTAACGGCATGAACCACCTCTTCCAGAGCAGAAATAGTGGCAGGAC
TATAATCTAACTGTCGAGCTCCGTGATTGGAGACAATAATCCCAGCAACA
CCTACTTCCACAGCTTTTATTGCATCTTCACGAGTAAGTATCCCCTTGAT
CAAAATTGGTAAGTTTGTAATAGATCTTAGCCATTCTAAATCCTTCCAAC
TTAAAGAAGCATCCATGGTCTCGTTGGCATCAGCTTCAAAATTCGAACCT
GTATCAGAGCTGACTTTGGTTGATAAGAGGCCTTCCAAATTCTTCAACGG
CGGTGTAATCATTTTGTTCTTTATATCTGCCTCCCTTCTA
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