CN186023

Overview
NameCN186023
Unique NameCN186023
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length790
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN186023 vs. ExPASy Swiss-Prot
Match: LLDD_ERWCT (L-lactate dehydrogenase [cytochrome] OS=Erwinia carotovora subsp. atroseptica GN=lldD PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.174e-30
Identity = 67/135 (49.63%), Postives = 88/135 (65.19%), Query Frame = -2
Query:  259 DASLSWKDLEWLRSITNLPILIKGILTREDAIKAVEVGVAGIIVSNHGARQLDYSPATISALEEVVHAVKGRVPILMDGGVRRGTDVFKALALGAQAVLIGRPVVYGLAAKGEYGVRRVIEMLKDEFELTMALTG 663
            D S+SW+DL W+R     P++IKGIL  EDA +AV  G  GI+VSNHG RQLD   +T  AL  +  AVKG + IL D G+R G DV + +ALGA  V++GR  VY LAA GE GV  ++ +++ E  + M LTG
Sbjct:  229 DPSISWQDLAWIREFWKGPMIIKGILDPEDAKEAVRFGADGIVVSNHGGRQLDGVLSTAHALPAIADAVKGDITILADSGIRSGLDVVRMIALGADGVMLGRAFVYALAAAGEAGVVNLLNLIEKEMRVAMTLTG 363          
BLAST of CN186023 vs. ExPASy Swiss-Prot
Match: LLDD_CAUCR (L-lactate dehydrogenase [cytochrome] OS=Caulobacter crescentus GN=lldD PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.174e-30
Identity = 65/135 (48.15%), Postives = 90/135 (66.67%), Query Frame = -2
Query:  259 DASLSWKDLEWLRSITNLPILIKGILTREDAIKAVEVGVAGIIVSNHGARQLDYSPATISALEEVVHAVKGRVPILMDGGVRRGTDVFKALALGAQAVLIGRPVVYGLAAKGEYGVRRVIEMLKDEFELTMALTG 663
            D S+ W DL+W+R     P++IKG+L  EDA  A ++G  G++VSNHG RQLD   ++  AL  +  AV  R+ +L DGGVR G DV + LALGA+ VLIGR   Y LAA+GE GV ++++++  E  + MALTG
Sbjct:  229 DPSIQWSDLKWIRDAWKGPLVIKGVLDPEDAKAAADIGADGVVVSNHGGRQLDGVLSSARALPAIADAVGDRLTVLADGGVRSGLDVVRMLALGARGVLIGRAYAYALAARGEAGVTQLLDLIDKEMRVAMALTG 363          
BLAST of CN186023 vs. ExPASy Swiss-Prot
Match: LLDD_CAUCN (L-lactate dehydrogenase [cytochrome] OS=Caulobacter crescentus (strain NA1000 / CB15N) GN=lldD PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.174e-30
Identity = 65/135 (48.15%), Postives = 90/135 (66.67%), Query Frame = -2
Query:  259 DASLSWKDLEWLRSITNLPILIKGILTREDAIKAVEVGVAGIIVSNHGARQLDYSPATISALEEVVHAVKGRVPILMDGGVRRGTDVFKALALGAQAVLIGRPVVYGLAAKGEYGVRRVIEMLKDEFELTMALTG 663
            D S+ W DL+W+R     P++IKG+L  EDA  A ++G  G++VSNHG RQLD   ++  AL  +  AV  R+ +L DGGVR G DV + LALGA+ VLIGR   Y LAA+GE GV ++++++  E  + MALTG
Sbjct:  229 DPSIQWSDLKWIRDAWKGPLVIKGVLDPEDAKAAADIGADGVVVSNHGGRQLDGVLSSARALPAIADAVGDRLTVLADGGVRSGLDVVRMLALGARGVLIGRAYAYALAARGEAGVTQLLDLIDKEMRVAMALTG 363          
BLAST of CN186023 vs. ExPASy Swiss-Prot
Match: LLDD_SALPC (L-lactate dehydrogenase [cytochrome] OS=Salmonella paratyphi C (strain RKS4594) GN=lldD PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.533e-30
Identity = 65/135 (48.15%), Postives = 90/135 (66.67%), Query Frame = -2
Query:  259 DASLSWKDLEWLRSITNLPILIKGILTREDAIKAVEVGVAGIIVSNHGARQLDYSPATISALEEVVHAVKGRVPILMDGGVRRGTDVFKALALGAQAVLIGRPVVYGLAAKGEYGVRRVIEMLKDEFELTMALTG 663
            D S+SWKDLEW+R   + P++IKG+L  EDA  AV  G  GI+VSNHG RQLD   ++  AL  +  AVKG + IL D G+R G DV + +ALGA  VL+GR  +Y LA  G+ GV  ++++++ E ++ M LTG
Sbjct:  229 DPSISWKDLEWIREFWDGPMVIKGLLDPEDARDAVRFGADGIVVSNHGGRQLDGVLSSARALPAIADAVKGDIAILADSGIRNGLDVVRMIALGADTVLLGRAYLYALATAGKAGVANLLDLIEKEMKVAMTLTG 363          
BLAST of CN186023 vs. ExPASy Swiss-Prot
Match: LLDD_AGRVS (L-lactate dehydrogenase [cytochrome] OS=Agrobacterium vitis (strain S4 / ATCC BAA-846) GN=lldD PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.533e-30
Identity = 69/138 (50.00%), Postives = 86/138 (62.32%), Query Frame = -2
Query:  259 ETMDASLSWKDLEWLRSITNLPILIKGILTREDAIKAVEVGVAGIIVSNHGARQLDYSPATISALEEVVHAVKGRVPILMDGGVRRGTDVFKALALGAQAVLIGRPVVYGLAAKGEYGVRRVIEMLKDEFELTMALTG 672
            E  D S+ WKDLEW+R     P++IKGIL  EDA  AV  G  GIIVSNHG RQLD   ++  AL  +  AVKG + IL D G+R G DV + +A GA  VLIGR  VY LAA G+ GV  ++++   E  + M LTG
Sbjct:  226 ENFDPSIGWKDLEWIRDFWKGPMIIKGILDPEDAKDAVRFGADGIIVSNHGGRQLDGVLSSARALPAIAAAVKGDLTILADSGIRSGLDVVRMIAQGADGVLIGRAFVYALAAAGQAGVENLLDLFAKEMRVAMTLTG 363          
BLAST of CN186023 vs. ExPASy Swiss-Prot
Match: LLDD_SERP5 (L-lactate dehydrogenase [cytochrome] OS=Serratia proteamaculans (strain 568) GN=lldD PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 2.002e-30
Identity = 66/135 (48.89%), Postives = 86/135 (63.70%), Query Frame = -2
Query:  259 DASLSWKDLEWLRSITNLPILIKGILTREDAIKAVEVGVAGIIVSNHGARQLDYSPATISALEEVVHAVKGRVPILMDGGVRRGTDVFKALALGAQAVLIGRPVVYGLAAKGEYGVRRVIEMLKDEFELTMALTG 663
            D S+SWKDL+W+R     P++IKGIL  EDA  AV  G  GI+VSNHG RQLD   +T  AL  +  AVKG + +L D G+R G DV + +ALGA  VL+GR   Y LAA G+ GV  ++E++  E  + M L G
Sbjct:  229 DPSISWKDLDWIREFWQGPMIIKGILDPEDAKDAVRFGADGIVVSNHGGRQLDGVLSTAHALPAIAEAVKGDITLLADSGIRSGLDVVRMIALGADGVLLGRAFAYALAAAGQAGVANLLELIDKEMRVAMTLIG 363          
BLAST of CN186023 vs. ExPASy Swiss-Prot
Match: LLDD_ALCFA (L-lactate dehydrogenase [cytochrome] OS=Alcaligenes faecalis GN=lldD PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 2.002e-30
Identity = 70/158 (44.30%), Postives = 96/158 (60.76%), Query Frame = -2
Query:  262 GLLSTKVSSDTG-SNFEADANETMDASLSWKDLEWLRSITNLPILIKGILTREDAIKAVEVGVAGIIVSNHGARQLDYSPATISALEEVVHAVKGRVPILMDGGVRRGTDVFKALALGAQAVLIGRPVVYGLAAKGEYGVRRVIEMLKDEFELTMALT 732
            G +S  +   TG  ++        D S+SWKDLEW+R     P+LIKGIL  +DA  AV  G  GIIVSNHG RQLD   ++  AL  +  AVKG++ IL D G+R G DV + +ALGA A ++GR  +Y LAA G+ GV  ++ +++ E  + M LT
Sbjct:  205 GNISRYLGKPTGLEDYMGYLGANFDPSISWKDLEWIREFWKGPMLIKGILDPDDARDAVRFGADGIIVSNHGGRQLDGVLSSARALPAIADAVKGQIKILADSGIRSGLDVVRMIALGADAAMLGRAYIYALAAAGQSGVDHLLGLIEKEIRVAMTLT 362          
BLAST of CN186023 vs. ExPASy Swiss-Prot
Match: YKN3_SCHPO (Uncharacterized lactate 2-monooxygenase PB1A11.03 OS=Schizosaccharomyces pombe GN=SPAPB1A11.03 PE=2 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 4.460e-30
Identity = 69/133 (51.88%), Postives = 92/133 (69.17%), Query Frame = -2
Query:  259 SLSWKDLEWLRSITNLPILIKGILTREDAIKAVEVGVAGIIVSNHGARQLDYSPATISALEEVVHAVKGRVPILMDGGVRRGTDVFKALALGAQAVLIGRPVVYGLAAKGEYGVRRVIEMLKDEFELTMALTG 657
            S  W+DL++LR   + PI++KGI+   DA KAVE G+ GI+VSNHG RQ D   A+++ L ++V AV  ++ +L D GVR G D+ KALALGA+ VLIGRP VYGLA +G  GV  VI  L  + ELT+ L+G
Sbjct:  257 SHDWEDLKFLRKHWDGPIVLKGIMNVPDAKKAVEYGMQGIVVSNHGGRQQDGGVASLTMLPKIVDAVGDKLDVLFDSGVRSGADIAKALALGAKMVLIGRPYVYGLALEGSSGVSHVIRCLLGDLELTLHLSG 389          
BLAST of CN186023 vs. ExPASy Swiss-Prot
Match: LLDD_XANP2 (L-lactate dehydrogenase [cytochrome] OS=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) GN=lldD PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.298e-29
Identity = 66/135 (48.89%), Postives = 85/135 (62.96%), Query Frame = -2
Query:  259 DASLSWKDLEWLRSITNLPILIKGILTREDAIKAVEVGVAGIIVSNHGARQLDYSPATISALEEVVHAVKGRVPILMDGGVRRGTDVFKALALGAQAVLIGRPVVYGLAAKGEYGVRRVIEMLKDEFELTMALTG 663
            D S+ WKDLEW+R     P++IKGIL  EDA  AV  G  GIIVSNHG RQLD   ++  A+  +  AVKG + +L D G+R G DV + LA GA  VL+GR  VY LAA G  GV  +++++  E  + M LTG
Sbjct:  229 DPSIGWKDLEWIREFWKGPMVIKGILDPEDARDAVRFGADGIIVSNHGGRQLDGVLSSARAMPAIADAVKGEMTLLADSGIRSGLDVVRMLAQGADGVLLGRAFVYALAAAGRAGVENLLDIIAKEMRVAMTLTG 363          
BLAST of CN186023 vs. ExPASy Swiss-Prot
Match: LLDD_BART1 (L-lactate dehydrogenase [cytochrome] OS=Bartonella tribocorum (strain CIP 105476 / IBS 506) GN=lldD PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 2.214e-29
Identity = 73/168 (43.45%), Postives = 98/168 (58.33%), Query Frame = -2
Query:  259 LKNLEGLLSTKVSSDT-----GSNFEADANETMDASLSWKDLEWLRSITNLPILIKGILTREDAIKAVEVGVAGIIVSNHGARQLDYSPATISALEEVVHAVKGRVPILMDGGVRRGTDVFKALALGAQAVLIGRPVVYGLAAKGEYGVRRVIEMLKDEFELTMALTG 747
            L N+   L  K++ D      G+NF        D S+ W DL+W+R      +++KGIL  EDA +AV+ G  GI+VSNHG RQLD   +T  AL  +  AVK  + IL D GVR G DV + +A GA AV+IGR  VY LAA GE GV  ++++  +E  + M LTG
Sbjct:  204 LGNVSTYLEKKIALDDYVGWLGANF--------DPSIGWHDLQWIRDFWKGKMILKGILDPEDAREAVQFGADGIVVSNHGGRQLDGVLSTARALPAIAEAVKNDLVILADSGVRSGLDVVRMIAQGADAVMIGRAFVYALAAAGEKGVAHLLDLFANEMRVAMTLTG 363          
The following BLAST results are available for this feature:
BLAST of CN186023 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 127
Match NameE-valueIdentityDescription
LLDD_ERWCT1.174e-3049.63L-lactate dehydrogenase [cytochrome] OS=Erwinia ca... [more]
LLDD_CAUCR1.174e-3048.15L-lactate dehydrogenase [cytochrome] OS=Caulobacte... [more]
LLDD_CAUCN1.174e-3048.15L-lactate dehydrogenase [cytochrome] OS=Caulobacte... [more]
LLDD_SALPC1.533e-3048.15L-lactate dehydrogenase [cytochrome] OS=Salmonella... [more]
LLDD_AGRVS1.533e-3050.00L-lactate dehydrogenase [cytochrome] OS=Agrobacter... [more]
LLDD_SERP52.002e-3048.89L-lactate dehydrogenase [cytochrome] OS=Serratia p... [more]
LLDD_ALCFA2.002e-3044.30L-lactate dehydrogenase [cytochrome] OS=Alcaligene... [more]
YKN3_SCHPO4.460e-3051.88Uncharacterized lactate 2-monooxygenase PB1A11.03 ... [more]
LLDD_XANP21.298e-2948.89L-lactate dehydrogenase [cytochrome] OS=Xanthobact... [more]
LLDD_BART12.214e-2943.45L-lactate dehydrogenase [cytochrome] OS=Bartonella... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002D23_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002D23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186023 ID=CN186023; Name=CN186023; organism=Citrus sinensis; type=EST; length=790bp
TTTTTTTTTTTTTTTTTACCAAATGGTTGTATAATATCCCTTTTAGATTC
AATACCTAATACACATACAAANATAATACAAATACCACTTGTTATTAAAN
ATAATACACATACAACACTAATATATATAGAGTGGTGTCAAAACGCACCC
CTTAAACATTTCTTGCAACACCAATAATATTTACACGCATCGAATGGGAT
TCTCTCCTCGCTCAGGTTCTCACATGTCTTCCTGGTAATATGTTTCACAC
CTAGGACAGCCAGTAAGGGCCATGGTCAACTCAAACTCATCCTTCAGCAT
TTCGATGACGCGTCTCACCCCATATTCCCCTTTTGCAGCAAGGCCGTAGA
CTACAGGCCTTCCAATAAGTACAGCTTGTGCACCGAGGGCCAATGCCTTG
AAAACATCTGTTCCTCGCCGCACTCCTCCATCCATAAGAATTGGAACTCT
TCCTTTAACGGCATGAACCACCTCTTCCAGAGCAGAAATAGTGGCAGGAC
TATAATCTAACTGTCGAGCTCCGTGATTGGAGACAATAATCCCAGCAACA
CCTACTTCCACAGCTTTTATTGCATCTTCACGAGTAAGTATCCCCTTGAT
CAAAATTGGTAAGTTTGTAATAGATCTTAGCCATTCTAAATCCTTCCAAC
TTAAAGAAGCATCCATGGTCTCGTTGGCATCAGCTTCAAAATTCGAACCT
GTATCAGAGCTGACTTTGGTTGATAAGAGGCCTTCCAAATTCTTCAACGG
CGGTGTAATCATTTTGTTCTTTATATCTGCCTCCCTTCTA
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