CN186023

Overview
NameCN186023
Unique NameCN186023
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length790
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN186023 vs. ExPASy Swiss-Prot
Match: LLDD_PSEU2 (L-lactate dehydrogenase [cytochrome] OS=Pseudomonas syringae pv. syringae (strain B728a) GN=lldD PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.891e-29
Identity = 65/140 (46.43%), Postives = 87/140 (62.14%), Query Frame = -2
Query:  244 DASLSWKDLEWLRSITNLPILIKGILTREDAIKAVEVGVAGIIVSNHGARQLDYSPATISALEEVVHAVKGRVPILMDGGVRRGTDVFKALALGAQAVLIGRPVVYGLAAKGEYGVRRVIEMLKDEFELTMALTGCPRCE 663
            D S+SWKDLEW+R     P++IKGIL  +DA  A+  G  GI+VSNHG RQLD   +T  AL  +V AV   + +L D G+R G DV + LALGA+ VL+GR + Y L A G+ GV  ++++   E  + M LTG    E
Sbjct:  229 DPSISWKDLEWIREFWQGPMIIKGILDPQDARDALSFGADGIVVSNHGGRQLDGVLSTAKALPPIVQAVGSDLTVLADSGIRSGLDVVRMLALGAKGVLLGRSMAYALGADGQRGVENMLDIFAREMHVAMTLTGVTSIE 368          
BLAST of CN186023 vs. ExPASy Swiss-Prot
Match: LLDD_PSEFS (L-lactate dehydrogenase [cytochrome] OS=Pseudomonas fluorescens (strain SBW25) GN=lldD PE=3 SV=2)

HSP 1 Score: 129.028 bits (323), Expect = 2.891e-29
Identity = 66/140 (47.14%), Postives = 87/140 (62.14%), Query Frame = -2
Query:  244 DASLSWKDLEWLRSITNLPILIKGILTREDAIKAVEVGVAGIIVSNHGARQLDYSPATISALEEVVHAVKGRVPILMDGGVRRGTDVFKALALGAQAVLIGRPVVYGLAAKGEYGVRRVIEMLKDEFELTMALTGCPRCE 663
            D S+SWKDLEW+R     P++IKGIL  +DA  AV  G  GI+VSNHG RQLD   +T  AL  +  AV   + +L+D G+R G DV + LALGA+A L+GR   Y LAA G+ GV  ++++   E  + M LTG    E
Sbjct:  229 DPSISWKDLEWIREFWKGPMIIKGILDPQDAKDAVSFGADGIVVSNHGGRQLDGVLSTAKALPPIADAVGDDLTVLVDSGIRSGLDVVRMLALGAKACLLGRASAYALAADGQNGVENLLDIFAKEMRVAMTLTGVTSIE 368          
BLAST of CN186023 vs. ExPASy Swiss-Prot
Match: LLDD_AZOC5 (L-lactate dehydrogenase [cytochrome] OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) GN=lldD PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 6.440e-29
Identity = 65/135 (48.15%), Postives = 87/135 (64.44%), Query Frame = -2
Query:  259 DASLSWKDLEWLRSITNLPILIKGILTREDAIKAVEVGVAGIIVSNHGARQLDYSPATISALEEVVHAVKGRVPILMDGGVRRGTDVFKALALGAQAVLIGRPVVYGLAAKGEYGVRRVIEMLKDEFELTMALTG 663
            D S+SWKDLEW+RS    P++IKGIL   DA  AV  G  GI+VSNHG RQLD   ++  AL  +  AV   + +L D G+R G DV + LALGA+ VL+GR   Y LA  G+ GV  ++++++ E  + MALTG
Sbjct:  229 DPSISWKDLEWIRSFWKGPMIIKGILDPVDARDAVAFGADGIVVSNHGGRQLDGVLSSARALPAIADAVGDDLTVLADSGIRTGLDVVRMLALGAKGVLLGRAFAYALATHGQAGVANLLDLIEKEMRVAMALTG 363          
BLAST of CN186023 vs. ExPASy Swiss-Prot
Match: LLDD1_MYCTU (Putative L-lactate dehydrogenase [cytochrome] 1 OS=Mycobacterium tuberculosis GN=lldD1 PE=3 SV=2)

HSP 1 Score: 127.102 bits (318), Expect = 1.099e-28
Identity = 60/120 (50.00%), Postives = 89/120 (74.17%), Query Frame = -2
Query:  292 SWKDLEWLRSITNLPILIKGILTREDAIKAVEVGVAGIIVSNHGARQLDYSPATISALEEVVHAVKGRVPILMDGGVRRGTDVFKALALGAQAVLIGRPVVYGLAAKGEYGVRRVIEMLK 651
            +W+D+ WLR +   P ++KG++  +DA +AV+ GV+ I VSNHG   LD +PA+I AL  V  AV  +V +L+DGG+RRG+DV KA+ALGA+AV+IGR  ++GLAA G+ GV  V+++L+
Sbjct:  236 TWEDIGWLRELWGGPFMLKGVMRVDDAKRAVDAGVSAISVSNHGGNNLDGTPASIRALPAVSAAVGDQVEVLLDGGIRRGSDVVKAVALGARAVMIGRAYLWGLAANGQAGVENVLDILR 355          
BLAST of CN186023 vs. ExPASy Swiss-Prot
Match: LLDD_BARQU (L-lactate dehydrogenase [cytochrome] OS=Bartonella quintana GN=lldD PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 3.196e-28
Identity = 69/168 (41.07%), Postives = 97/168 (57.74%), Query Frame = -2
Query:  259 LKNLEGLLSTKVSSDT-----GSNFEADANETMDASLSWKDLEWLRSITNLPILIKGILTREDAIKAVEVGVAGIIVSNHGARQLDYSPATISALEEVVHAVKGRVPILMDGGVRRGTDVFKALALGAQAVLIGRPVVYGLAAKGEYGVRRVIEMLKDEFELTMALTG 747
            L N+   L  K++ +      G+NF        D S+ W DL+W+R      +++KGIL  +DA +AV+ G  GI+VSNHG RQLD   +T  AL  +   V G + IL D GVR G DV + +A GA AV+IGR  +Y LAA GE GV  ++++  +E  + M LTG
Sbjct:  204 LGNVSTYLQKKITLEDYVGWLGANF--------DPSIGWSDLQWIRDFWKGKMILKGILDPQDAREAVQFGADGIVVSNHGGRQLDGVLSTARALPAIAEVVTGDLTILADSGVRSGLDVVRMIAQGADAVMIGRAFIYALAAAGEKGVMHLLDLFANEMRVAMTLTG 363          
BLAST of CN186023 vs. ExPASy Swiss-Prot
Match: LA2M_MYCSM (Lactate 2-monooxygenase OS=Mycobacterium smegmatis PE=1 SV=3)

HSP 1 Score: 122.479 bits (306), Expect = 2.706e-27
Identity = 63/133 (47.37%), Postives = 85/133 (63.91%), Query Frame = -2
Query:  259 SLSWKDLEWLRSITNLPILIKGILTREDAIKAVEVGVAGIIVSNHGARQLDYSPATISALEEVVHAVKGRVPILMDGGVRRGTDVFKALALGAQAVLIGRPVVYGLAAKGEYGVRRVIEMLKDEFELTMALTG 657
            S++W+D++W+RSIT +P+++KGI   +DA +AV+ GV GI  SNHG RQ +     +  L EVV A  G  P+L D G+R G DV KALA+GA AV IGRP  +G A  G  G+  V   L  E +L MA+ G
Sbjct:  247 SVTWEDIDWVRSITKMPVILKGIQHPDDARRAVDSGVDGIYCSNHGGRQANGGLPALDCLPEVVKA-SGDTPVLFDSGIRTGADVVKALAMGASAVGIGRPYAWGAALGGSKGIEHVARSLLAEADLIMAVDG 378          
BLAST of CN186023 vs. ExPASy Swiss-Prot
Match: LLDD2_MYCTU (Putative L-lactate dehydrogenase [cytochrome] 2 OS=Mycobacterium tuberculosis GN=lldD2 PE=3 SV=2)

HSP 1 Score: 112.849 bits (281), Expect = 2.144e-24
Identity = 61/139 (43.88%), Postives = 82/139 (58.99%), Query Frame = -2
Query:  259 NETMDASLSWKDLEWLRSITNLPILIKGILTREDAIKAVEVGVAGIIVSNHGARQLDYSPATISALEEVVHAVKGRVPILMDGGVRRGTDVFKALALGAQAVLIGRPVVYGLAAKGEYGVRRVIEMLKDEFELTMALTG 675
            N   D SL++ DL W++S     +++KGI T +DA   V+ GV GI++SNHG RQLD +P     L  V   +     IL+D G+  G D+  A+ALGA+  LIGR  +YGL A GE GV R IE+L+     TM L G
Sbjct:  251 NTVFDPSLTFDDLAWIKSQWPGKLVVKGIQTLDDARAVVDRGVDGIVLSNHGGRQLDRAPVPFHLLPHVARELGKHTEILVDTGIMSGADIVAAIALGARCTLIGRAYLYGLMAGGEAGVNRAIEILQTGVIRTMRLLG 389          
The following BLAST results are available for this feature:
BLAST of CN186023 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 127
Match NameE-valueIdentityDescription
LLDD_PSEU22.891e-2946.43L-lactate dehydrogenase [cytochrome] OS=Pseudomona... [more]
LLDD_PSEFS2.891e-2947.14L-lactate dehydrogenase [cytochrome] OS=Pseudomona... [more]
LLDD_AZOC56.440e-2948.15L-lactate dehydrogenase [cytochrome] OS=Azorhizobi... [more]
LLDD1_MYCTU1.099e-2850.00Putative L-lactate dehydrogenase [cytochrome] 1 OS... [more]
LLDD_BARQU3.196e-2841.07L-lactate dehydrogenase [cytochrome] OS=Bartonella... [more]
LA2M_MYCSM2.706e-2747.37Lactate 2-monooxygenase OS=Mycobacterium smegmatis... [more]
LLDD2_MYCTU2.144e-2443.88Putative L-lactate dehydrogenase [cytochrome] 2 OS... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002D23_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002D23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186023 ID=CN186023; Name=CN186023; organism=Citrus sinensis; type=EST; length=790bp
TTTTTTTTTTTTTTTTTACCAAATGGTTGTATAATATCCCTTTTAGATTC
AATACCTAATACACATACAAANATAATACAAATACCACTTGTTATTAAAN
ATAATACACATACAACACTAATATATATAGAGTGGTGTCAAAACGCACCC
CTTAAACATTTCTTGCAACACCAATAATATTTACACGCATCGAATGGGAT
TCTCTCCTCGCTCAGGTTCTCACATGTCTTCCTGGTAATATGTTTCACAC
CTAGGACAGCCAGTAAGGGCCATGGTCAACTCAAACTCATCCTTCAGCAT
TTCGATGACGCGTCTCACCCCATATTCCCCTTTTGCAGCAAGGCCGTAGA
CTACAGGCCTTCCAATAAGTACAGCTTGTGCACCGAGGGCCAATGCCTTG
AAAACATCTGTTCCTCGCCGCACTCCTCCATCCATAAGAATTGGAACTCT
TCCTTTAACGGCATGAACCACCTCTTCCAGAGCAGAAATAGTGGCAGGAC
TATAATCTAACTGTCGAGCTCCGTGATTGGAGACAATAATCCCAGCAACA
CCTACTTCCACAGCTTTTATTGCATCTTCACGAGTAAGTATCCCCTTGAT
CAAAATTGGTAAGTTTGTAATAGATCTTAGCCATTCTAAATCCTTCCAAC
TTAAAGAAGCATCCATGGTCTCGTTGGCATCAGCTTCAAAATTCGAACCT
GTATCAGAGCTGACTTTGGTTGATAAGAGGCCTTCCAAATTCTTCAACGG
CGGTGTAATCATTTTGTTCTTTATATCTGCCTCCCTTCTA
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