CN186023

Overview
NameCN186023
Unique NameCN186023
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length790
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN186023 vs. ExPASy Swiss-Prot
Match: LLDD_YERPE (L-lactate dehydrogenase [cytochrome] OS=Yersinia pestis GN=lldD PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 7.352e-33
Identity = 73/153 (47.71%), Postives = 96/153 (62.75%), Query Frame = -2
Query:  205 DASLSWKDLEWLRSITNLPILIKGILTREDAIKAVEVGVAGIIVSNHGARQLDYSPATISALEEVVHAVKGRVPILMDGGVRRGTDVFKALALGAQAVLIGRPVVYGLAAKGEYGVRRVIEMLKDEFELTMALTGCPRCETYYQEDM*EPERG 663
            D S+SWKDLEW+R     P++IKGIL  EDA  AV+ G  GI+VSNHG RQLD   +T  AL  +  AVKG + IL D G+R G DV + +ALGA +VL+GR  VY LA  GE GV  ++ +++ E  + M LTG  R     ++ +   ERG
Sbjct:  229 DPSISWKDLEWVREFWQGPMIIKGILDPEDAKDAVKFGADGIVVSNHGGRQLDGVLSTARALPAIADAVKGDITILADSGIRTGLDVVRMIALGADSVLLGRAFVYALATAGEAGVINLLTLIEQEMRVAMTLTGAKRIADINRDSLAVSERG 381          
BLAST of CN186023 vs. ExPASy Swiss-Prot
Match: LLDD_YERPB (L-lactate dehydrogenase [cytochrome] OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=lldD PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 7.352e-33
Identity = 73/153 (47.71%), Postives = 96/153 (62.75%), Query Frame = -2
Query:  205 DASLSWKDLEWLRSITNLPILIKGILTREDAIKAVEVGVAGIIVSNHGARQLDYSPATISALEEVVHAVKGRVPILMDGGVRRGTDVFKALALGAQAVLIGRPVVYGLAAKGEYGVRRVIEMLKDEFELTMALTGCPRCETYYQEDM*EPERG 663
            D S+SWKDLEW+R     P++IKGIL  EDA  AV+ G  GI+VSNHG RQLD   +T  AL  +  AVKG + IL D G+R G DV + +ALGA +VL+GR  VY LA  GE GV  ++ +++ E  + M LTG  R     ++ +   ERG
Sbjct:  229 DPSISWKDLEWVREFWQGPMIIKGILDPEDAKDAVKFGADGIVVSNHGGRQLDGVLSTARALPAIADAVKGDITILADSGIRTGLDVVRMIALGADSVLLGRAFVYALATAGEAGVINLLTLIEQEMRVAMTLTGAKRIADINRDSLAVSERG 381          
BLAST of CN186023 vs. ExPASy Swiss-Prot
Match: LLDD_YERPA (L-lactate dehydrogenase [cytochrome] OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=lldD PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 7.352e-33
Identity = 73/153 (47.71%), Postives = 96/153 (62.75%), Query Frame = -2
Query:  205 DASLSWKDLEWLRSITNLPILIKGILTREDAIKAVEVGVAGIIVSNHGARQLDYSPATISALEEVVHAVKGRVPILMDGGVRRGTDVFKALALGAQAVLIGRPVVYGLAAKGEYGVRRVIEMLKDEFELTMALTGCPRCETYYQEDM*EPERG 663
            D S+SWKDLEW+R     P++IKGIL  EDA  AV+ G  GI+VSNHG RQLD   +T  AL  +  AVKG + IL D G+R G DV + +ALGA +VL+GR  VY LA  GE GV  ++ +++ E  + M LTG  R     ++ +   ERG
Sbjct:  229 DPSISWKDLEWVREFWQGPMIIKGILDPEDAKDAVKFGADGIVVSNHGGRQLDGVLSTARALPAIADAVKGDITILADSGIRTGLDVVRMIALGADSVLLGRAFVYALATAGEAGVINLLTLIEQEMRVAMTLTGAKRIADINRDSLAVSERG 381          
BLAST of CN186023 vs. ExPASy Swiss-Prot
Match: LLDD_YERP3 (L-lactate dehydrogenase [cytochrome] OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=lldD PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 7.352e-33
Identity = 73/153 (47.71%), Postives = 96/153 (62.75%), Query Frame = -2
Query:  205 DASLSWKDLEWLRSITNLPILIKGILTREDAIKAVEVGVAGIIVSNHGARQLDYSPATISALEEVVHAVKGRVPILMDGGVRRGTDVFKALALGAQAVLIGRPVVYGLAAKGEYGVRRVIEMLKDEFELTMALTGCPRCETYYQEDM*EPERG 663
            D S+SWKDLEW+R     P++IKGIL  EDA  AV+ G  GI+VSNHG RQLD   +T  AL  +  AVKG + IL D G+R G DV + +ALGA +VL+GR  VY LA  GE GV  ++ +++ E  + M LTG  R     ++ +   ERG
Sbjct:  229 DPSISWKDLEWVREFWQGPMIIKGILDPEDAKDAVKFGADGIVVSNHGGRQLDGVLSTARALPAIADAVKGDITILADSGIRTGLDVVRMIALGADSVLLGRAFVYALATAGEAGVINLLTLIEQEMRVAMTLTGAKRIADINRDSLAVSERG 381          
BLAST of CN186023 vs. ExPASy Swiss-Prot
Match: LLDD_PSEAB (L-lactate dehydrogenase [cytochrome] OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=lldD PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 9.602e-33
Identity = 70/135 (51.85%), Postives = 93/135 (68.89%), Query Frame = -2
Query:  259 DASLSWKDLEWLRSITNLPILIKGILTREDAIKAVEVGVAGIIVSNHGARQLDYSPATISALEEVVHAVKGRVPILMDGGVRRGTDVFKALALGAQAVLIGRPVVYGLAAKGEYGVRRVIEMLKDEFELTMALTG 663
            D S++WKDLEW+R   + P++IKGIL  EDA  AV+ G  GI+VSNHG RQLD   ++  AL  +  AVKG + IL D G+R G DV + +ALGA +VL+GR  VY LAA GE GVR ++E+++ E  + M LTG
Sbjct:  229 DPSIAWKDLEWIREFWDGPMVIKGILDPEDARDAVKFGADGIVVSNHGGRQLDGVLSSARALPAIADAVKGELAILADSGIRTGLDVVRMIALGADSVLLGRAFVYALAAAGEAGVRNLLELIEKEMRVAMVLTG 363          
BLAST of CN186023 vs. ExPASy Swiss-Prot
Match: LLDD_CHRSD (L-lactate dehydrogenase [cytochrome] OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) GN=lldD PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 9.602e-33
Identity = 69/135 (51.11%), Postives = 89/135 (65.93%), Query Frame = -2
Query:  259 DASLSWKDLEWLRSITNLPILIKGILTREDAIKAVEVGVAGIIVSNHGARQLDYSPATISALEEVVHAVKGRVPILMDGGVRRGTDVFKALALGAQAVLIGRPVVYGLAAKGEYGVRRVIEMLKDEFELTMALTG 663
            D S+SWKDLEW+R   + P++IKGIL  EDA  AV  G  GI+VSNHG RQLD  P+T  AL  +  AVKG + IL D GVR G DV + +A+GA  +L+GR  +Y LA  GE GV  ++E+ + E  + M LTG
Sbjct:  229 DPSISWKDLEWIREFWDGPMIIKGILDPEDARDAVRFGADGIVVSNHGGRQLDGVPSTARALPAIADAVKGDLAILADSGVRNGLDVVRMIAMGADTILLGRAYIYALATAGEAGVAHLLELFEKEMRVAMTLTG 363          
BLAST of CN186023 vs. ExPASy Swiss-Prot
Match: LLDD_STRM5 (L-lactate dehydrogenase [cytochrome] OS=Stenotrophomonas maltophilia (strain R551-3) GN=lldD PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.794e-32
Identity = 75/162 (46.30%), Postives = 100/162 (61.73%), Query Frame = -2
Query:  250 GLLSTKVSSDTG-SNFEADANETMDASLSWKDLEWLRSITNLPILIKGILTREDAIKAVEVGVAGIIVSNHGARQLDYSPATISALEEVVHAVKGRVPILMDGGVRRGTDVFKALALGAQAVLIGRPVVYGLAAKGEYGVRRVIEMLKDEFELTMALTGCPR 732
            G +ST   + TG  ++        D S+SWKDLEW+R     P++IKGIL  +DA  AV+ G  GI+VSNHG RQLD   +T  AL  +  AV+G + IL D G+R G DV + LALGA  VL+GR  VY LAA+GE GV  +++++  E  + M LTG  R
Sbjct:  205 GNISTYRGNPTGLEDYIGWLGSNFDPSISWKDLEWIREFWKGPMVIKGILDPDDARDAVKFGADGIVVSNHGGRQLDGVLSTARALPAIADAVQGDLKILADSGIRTGLDVVRMLALGADTVLLGRAFVYALAAQGEAGVANLLDLIAKEMRVAMTLTGARR 366          
BLAST of CN186023 vs. ExPASy Swiss-Prot
Match: LLDD_STRMK (L-lactate dehydrogenase [cytochrome] OS=Stenotrophomonas maltophilia (strain K279a) GN=lldD PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 3.649e-32
Identity = 75/162 (46.30%), Postives = 99/162 (61.11%), Query Frame = -2
Query:  250 GLLSTKVSSDTG-SNFEADANETMDASLSWKDLEWLRSITNLPILIKGILTREDAIKAVEVGVAGIIVSNHGARQLDYSPATISALEEVVHAVKGRVPILMDGGVRRGTDVFKALALGAQAVLIGRPVVYGLAAKGEYGVRRVIEMLKDEFELTMALTGCPR 732
            G +ST   + TG  ++        D S+SWKDLEW+R     P++IKGIL  +DA  AV  G  GI+VSNHG RQLD   +T  AL  +  AV+G + IL D G+R G DV + LALGA  VL+GR  VY LAA+GE GV  +++++  E  + M LTG  R
Sbjct:  205 GNISTYRGNPTGLEDYIGWLGSNFDPSISWKDLEWIREFWKGPMVIKGILDPDDARDAVRFGADGIVVSNHGGRQLDGVLSTARALPAIADAVQGDLKILADSGIRTGLDVVRMLALGADTVLLGRAFVYALAAQGEAGVANLLDLIAKEMRVAMTLTGARR 366          
BLAST of CN186023 vs. ExPASy Swiss-Prot
Match: LLDD_HAEDU (L-lactate dehydrogenase [cytochrome] OS=Haemophilus ducreyi GN=lldD PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 3.649e-32
Identity = 75/166 (45.18%), Postives = 99/166 (59.64%), Query Frame = -2
Query:  250 LKNLEGLLSTKVSSDTGSNFEADANETMDASLSWKDLEWLRSITNLPILIKGILTREDAIKAVEVGVAGIIVSNHGARQLDYSPATISALEEVVHAVKGRVPILMDGGVRRGTDVFKALALGAQAVLIGRPVVYGLAAKGEYGVRRVIEMLKDEFELTMALTGCPR 747
            L N+ G     V  D  + + AD     D S+SWKDLEW+R   + P++IKGIL  EDA  AV  G  GI+VSNHG RQLD + ++  AL  +  AVKG + IL D G+R G DV + +ALGA A LIGR  VY L+A G  GV  ++++ + E  + M LT   R
Sbjct:  204 LGNVSGYTGKSVGLDDYAVWLAD---NFDPSISWKDLEWIRDFWDGPMVIKGILDVEDAKDAVRFGADGIVVSNHGGRQLDGALSSAKALPSIADAVKGEIKILADSGIRNGLDVVRMIALGADATLIGRAFVYALSAAGRAGVENMLDIFRKEMHVAMTLTSNAR 366          
BLAST of CN186023 vs. ExPASy Swiss-Prot
Match: MDLB_PSEPU ((S)-mandelate dehydrogenase OS=Pseudomonas putida GN=mdlB PE=1 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 6.224e-32
Identity = 77/162 (47.53%), Postives = 107/162 (66.05%), Query Frame = -2
Query:  253 LSTKVSSDTGSNFEADA---NETMDASLSWKDLEWLRSITNLPILIKGILTREDAIKAVEVGVAGIIVSNHGARQLDYSPATISALEEVVHAV-KGRVPILMDGGVRRGTDVFKALALGAQAVLIGRPVVYGLAAKGEYGVRRVIEMLKDEFELTMALTGCP 726
            L+  VSS T S+ E  A   +  MDAS +W+ L WLR +    +L+KG+L+ EDA + +  G  G+I+SNHG RQLD     IS +E +  +V K   P+L+D G RRG+D+ KALALGA+AVL+GR  +YGLAA+GE GV  V+ +LK + + T+A  GCP
Sbjct:  205 LANFVSSQT-SSLEMQAALMSRQMDASFNWEALRWLRDLWPHKLLVKGLLSAEDADRCIAEGADGVILSNHGGRQLD---CAISPMEVLAQSVAKTGKPVLIDSGFRRGSDIVKALALGAEAVLLGRATLYGLAARGETGVDEVLTLLKADIDRTLAQIGCP 362          
The following BLAST results are available for this feature:
BLAST of CN186023 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 127
Match NameE-valueIdentityDescription
LLDD_YERPE7.352e-3347.71L-lactate dehydrogenase [cytochrome] OS=Yersinia p... [more]
LLDD_YERPB7.352e-3347.71L-lactate dehydrogenase [cytochrome] OS=Yersinia p... [more]
LLDD_YERPA7.352e-3347.71L-lactate dehydrogenase [cytochrome] OS=Yersinia p... [more]
LLDD_YERP37.352e-3347.71L-lactate dehydrogenase [cytochrome] OS=Yersinia p... [more]
LLDD_PSEAB9.602e-3351.85L-lactate dehydrogenase [cytochrome] OS=Pseudomona... [more]
LLDD_CHRSD9.602e-3351.11L-lactate dehydrogenase [cytochrome] OS=Chromohalo... [more]
LLDD_STRM52.794e-3246.30L-lactate dehydrogenase [cytochrome] OS=Stenotroph... [more]
LLDD_STRMK3.649e-3246.30L-lactate dehydrogenase [cytochrome] OS=Stenotroph... [more]
LLDD_HAEDU3.649e-3245.18L-lactate dehydrogenase [cytochrome] OS=Haemophilu... [more]
MDLB_PSEPU6.224e-3247.53(S)-mandelate dehydrogenase OS=Pseudomonas putida ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002D23_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002D23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186023 ID=CN186023; Name=CN186023; organism=Citrus sinensis; type=EST; length=790bp
TTTTTTTTTTTTTTTTTACCAAATGGTTGTATAATATCCCTTTTAGATTC
AATACCTAATACACATACAAANATAATACAAATACCACTTGTTATTAAAN
ATAATACACATACAACACTAATATATATAGAGTGGTGTCAAAACGCACCC
CTTAAACATTTCTTGCAACACCAATAATATTTACACGCATCGAATGGGAT
TCTCTCCTCGCTCAGGTTCTCACATGTCTTCCTGGTAATATGTTTCACAC
CTAGGACAGCCAGTAAGGGCCATGGTCAACTCAAACTCATCCTTCAGCAT
TTCGATGACGCGTCTCACCCCATATTCCCCTTTTGCAGCAAGGCCGTAGA
CTACAGGCCTTCCAATAAGTACAGCTTGTGCACCGAGGGCCAATGCCTTG
AAAACATCTGTTCCTCGCCGCACTCCTCCATCCATAAGAATTGGAACTCT
TCCTTTAACGGCATGAACCACCTCTTCCAGAGCAGAAATAGTGGCAGGAC
TATAATCTAACTGTCGAGCTCCGTGATTGGAGACAATAATCCCAGCAACA
CCTACTTCCACAGCTTTTATTGCATCTTCACGAGTAAGTATCCCCTTGAT
CAAAATTGGTAAGTTTGTAATAGATCTTAGCCATTCTAAATCCTTCCAAC
TTAAAGAAGCATCCATGGTCTCGTTGGCATCAGCTTCAAAATTCGAACCT
GTATCAGAGCTGACTTTGGTTGATAAGAGGCCTTCCAAATTCTTCAACGG
CGGTGTAATCATTTTGTTCTTTATATCTGCCTCCCTTCTA
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