CN186013

Overview
NameCN186013
Unique NameCN186013
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length786
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CN186013 vs. ExPASy Swiss-Prot
Match: METK_GEOSW (S-adenosylmethionine synthetase OS=Geobacillus sp. (strain WCH70) GN=metK PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.682e-11
Identity = 34/49 (69.39%), Postives = 41/49 (83.67%), Query Frame = -3 
Query:  152 LFTSESVNEGYPDKLCDHISDAILDACLEQDPDRKLACET-CTKDLVMV 295
            LFTSESV EG+PDK+CD ISDAILDA LE+DP+ ++ACET  T  LV+V
Sbjct:    7 LFTSESVTEGHPDKICDQISDAILDAILEKDPNARVACETSVTTGLVLV 55
[Close]
BLAST of CN186013 vs. ExPASy Swiss-Prot
Match: METK_GEOKA (S-adenosylmethionine synthetase OS=Geobacillus kaustophilus GN=metK PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.682e-11
Identity = 34/49 (69.39%), Postives = 41/49 (83.67%), Query Frame = -3 
Query:  152 LFTSESVNEGYPDKLCDHISDAILDACLEQDPDRKLACET-CTKDLVMV 295
            LFTSESV EG+PDK+CD ISDAILDA LE+DP+ ++ACET  T  LV+V
Sbjct:    7 LFTSESVTEGHPDKICDQISDAILDAILEKDPNARVACETSVTTGLVLV 55
[Close]
BLAST of CN186013 vs. ExPASy Swiss-Prot
Match: METK_CLOBA (S-adenosylmethionine synthetase OS=Clostridium botulinum (strain Alaska E43 / Type E3) GN=metK PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.682e-11
Identity = 34/50 (68.00%), Postives = 41/50 (82.00%), Query Frame = -3 
Query:  149 LFTSESVNEGYPDKLCDHISDAILDACLEQDPDRKLACETC-TKDLVMVV 295
            LFTSESV EG+PDK+CD ISDAILDA L +D + ++ACETC T  LVMV+
Sbjct:    4 LFTSESVTEGHPDKMCDQISDAILDAILAKDSNARVACETCTTTGLVMVM 53
[Close]
BLAST of CN186013 vs. ExPASy Swiss-Prot
Match: METK_TREDE (S-adenosylmethionine synthetase OS=Treponema denticola GN=metK PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.502e-11
Identity = 30/48 (62.50%), Postives = 38/48 (79.17%), Query Frame = -3 
Query:  149 FTSESVNEGYPDKLCDHISDAILDACLEQDPDRKLACETCTKDLVMVV 292
            FTSESV+EG+PDKLCD ISDA+LDACL  DP+  +ACET     +++V
Sbjct:    8 FTSESVSEGHPDKLCDQISDAVLDACLRDDPESHVACETFASTALVLV 55
[Close]
BLAST of CN186013 vs. ExPASy Swiss-Prot
Match: METK_PROMS (S-adenosylmethionine synthetase OS=Prochlorococcus marinus (strain AS9601) GN=metK PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.502e-11
Identity = 29/44 (65.91%), Postives = 37/44 (84.09%), Query Frame = -3 
Query:  176 METFLFTSESVNEGYPDKLCDHISDAILDACLEQDPDRKLACET 307
            M  F+FTSESV EG+PDK+CD ISDA+LDA L +DP+ ++ACET
Sbjct:    1 MSDFIFTSESVTEGHPDKICDQISDAVLDALLTEDPESRVACET 44
[Close]
BLAST of CN186013 vs. ExPASy Swiss-Prot
Match: METK_PROM9 (S-adenosylmethionine synthetase OS=Prochlorococcus marinus (strain MIT 9312) GN=metK PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.502e-11
Identity = 29/44 (65.91%), Postives = 37/44 (84.09%), Query Frame = -3 
Query:  176 METFLFTSESVNEGYPDKLCDHISDAILDACLEQDPDRKLACET 307
            M  F+FTSESV EG+PDK+CD ISDA+LDA L +DP+ ++ACET
Sbjct:    1 MSDFIFTSESVTEGHPDKICDQISDAVLDALLTEDPESRVACET 44
[Close]
BLAST of CN186013 vs. ExPASy Swiss-Prot
Match: METK_PROM2 (S-adenosylmethionine synthetase OS=Prochlorococcus marinus (strain MIT 9215) GN=metK PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.502e-11
Identity = 29/44 (65.91%), Postives = 37/44 (84.09%), Query Frame = -3 
Query:  176 METFLFTSESVNEGYPDKLCDHISDAILDACLEQDPDRKLACET 307
            M  F+FTSESV EG+PDK+CD ISDA+LDA L +DP+ ++ACET
Sbjct:    1 MSDFIFTSESVTEGHPDKICDQISDAVLDALLTEDPESRVACET 44
[Close]
BLAST of CN186013 vs. ExPASy Swiss-Prot
Match: METK_PROM0 (S-adenosylmethionine synthetase OS=Prochlorococcus marinus (strain MIT 9301) GN=metK PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.502e-11
Identity = 29/44 (65.91%), Postives = 37/44 (84.09%), Query Frame = -3 
Query:  176 METFLFTSESVNEGYPDKLCDHISDAILDACLEQDPDRKLACET 307
            M  F+FTSESV EG+PDK+CD ISDA+LDA L +DP+ ++ACET
Sbjct:    1 MSDFIFTSESVTEGHPDKICDQISDAVLDALLTEDPESRVACET 44
[Close]
BLAST of CN186013 vs. ExPASy Swiss-Prot
Match: METK_NITEU (S-adenosylmethionine synthetase OS=Nitrosomonas europaea GN=metK PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.502e-11
Identity = 32/53 (60.38%), Postives = 43/53 (81.13%), Query Frame = -3 
Query:  152 METFLFTSESVNEGYPDKLCDHISDAILDACLEQDPDRKLACET-CTKDLVMV 307
            M  +LFTSESV+EG+PDK+ D ISDAILDA L+QDP  ++ACET C+  L+++
Sbjct:    1 MSNYLFTSESVSEGHPDKVADQISDAILDAILQQDPHARVACETMCSTGLIVL 53
[Close]
BLAST of CN186013 vs. ExPASy Swiss-Prot
Match: METK_NITEC (S-adenosylmethionine synthetase OS=Nitrosomonas eutropha (strain C91) GN=metK PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.502e-11
Identity = 32/53 (60.38%), Postives = 43/53 (81.13%), Query Frame = -3 
Query:  152 METFLFTSESVNEGYPDKLCDHISDAILDACLEQDPDRKLACET-CTKDLVMV 307
            M  +LFTSESV+EG+PDK+ D ISDAILDA L+QDP  ++ACET C+  L+++
Sbjct:    1 MSNYLFTSESVSEGHPDKVADQISDAILDAILQQDPHARVACETMCSTGLIVL 53
The following BLAST results are available for this feature:
BLAST of CN186013 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 211
Match NameE-valueIdentityDescription
METK_GEOSW2.682e-1169.39S-adenosylmethionine synthetase OS=Geobacillus sp.... [more]
METK_GEOKA2.682e-1169.39S-adenosylmethionine synthetase OS=Geobacillus kau... [more]
METK_CLOBA2.682e-1168.00S-adenosylmethionine synthetase OS=Clostridium bot... [more]
METK_TREDE3.502e-1162.50S-adenosylmethionine synthetase OS=Treponema denti... [more]
METK_PROMS3.502e-1165.91S-adenosylmethionine synthetase OS=Prochlorococcus... [more]
METK_PROM93.502e-1165.91S-adenosylmethionine synthetase OS=Prochlorococcus... [more]
METK_PROM23.502e-1165.91S-adenosylmethionine synthetase OS=Prochlorococcus... [more]
METK_PROM03.502e-1165.91S-adenosylmethionine synthetase OS=Prochlorococcus... [more]
METK_NITEU3.502e-1160.38S-adenosylmethionine synthetase OS=Nitrosomonas eu... [more]
METK_NITEC3.502e-1160.38S-adenosylmethionine synthetase OS=Nitrosomonas eu... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0002D17_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002D17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186013 ID=CN186013; Name=CN186013; organism=Citrus sinensis; type=EST; length=786bp
TTTTTTTTTTTTTTTTGAATTTACACTTCTATTAACTACCAAGTCCCATT
TATACTCTACACACATAATATTAATAAACTATATATGAATAAACAAACAT
AAAATCCTCAAATCAAAAGCAATTCTCGGCCGCAATATACAATAGCAATA
CAACCATAACCAAGTCTTTGGTACAGGTTTCACAAGCCAACTTCCTATCT
GGGTCTTGTTCGAGACAAGCATCGAGAATGGCATCGGAGATATGATCACA
GAGCTTGTCTGGATAACCCTCGTTCACAGATTCTGAAGTGAACAAAAAAG
TCTCCATTTTTTCTTCAAAAACTGTAGACTGCGGCACCAAAGATGACTGC
GTGTGAGGGGCTAACGATGGCGTCACTGTGCTTGAGGGGAGGGGCTGTGC
TAGGAGGCCGTGCACGTGAGGAAGAGAGGGGCTAAGCTGACACGAGGGAG
AGACATGCTCACAAGGAAGAAACTGAGAGGGGCTGAGCTGAAGTTCTGCG
TCGTGTGGAGAGGGAGAAACGCGAGGCTGAGAGGTGAGGGGGAGAGGCGT
GGGAAACAACCGCTTCAAGTTTTAAATTAACAGCATCAAACTAACCCAAC
AAAACTAAAACAAATATTCTCATACTGGGTAAAGTTCCATCAAGTGCAGC
AAAGTAAAAAGCATACAAACAAAAATAAAGGCATTTAGAAAAGAGATGTT
CCCTTTCCCTTCTTGTCTCCACCAATTTCAAAGTGCTTGCACCTCTTGAT
GGGATGTTGAGACACATGCTTGCAACCCTGGCATTG
back to top