CN186013

Overview
NameCN186013
Unique NameCN186013
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length786
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN186013 vs. ExPASy Swiss-Prot
Match: METK3_VITVI (S-adenosylmethionine synthetase 3 OS=Vitis vinifera GN=METK3 PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 5.046e-18
Identity = 42/53 (79.25%), Postives = 50/53 (94.34%), Query Frame = -3
Query:  152 METFLFTSESVNEGYPDKLCDHISDAILDACLEQDPDRKLACETCTK-DLVMV 307
            M+TFLFTSESVNEG+PDKLCD +SDAILDACLEQDP+ K+ACETC+K ++VMV
Sbjct:    1 MDTFLFTSESVNEGHPDKLCDQVSDAILDACLEQDPESKVACETCSKTNMVMV 53          
BLAST of CN186013 vs. ExPASy Swiss-Prot
Match: METK3_POPTR (S-adenosylmethionine synthetase 3 OS=Populus trichocarpa GN=METK3 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 5.046e-18
Identity = 43/52 (82.69%), Postives = 48/52 (92.31%), Query Frame = -3
Query:  152 ETFLFTSESVNEGYPDKLCDHISDAILDACLEQDPDRKLACETCTK-DLVMV 304
            ETFLFTSESVNEG+PDKLCD ISDA+LDACL QDPD K+ACETCTK ++VMV
Sbjct:    3 ETFLFTSESVNEGHPDKLCDQISDAVLDACLAQDPDSKVACETCTKTNMVMV 54          
BLAST of CN186013 vs. ExPASy Swiss-Prot
Match: METK2_SUASA (S-adenosylmethionine synthetase 2 OS=Suaeda salsa GN=METK2 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 5.046e-18
Identity = 42/53 (79.25%), Postives = 49/53 (92.45%), Query Frame = -3
Query:  152 METFLFTSESVNEGYPDKLCDHISDAILDACLEQDPDRKLACETCTK-DLVMV 307
            ME+FLFTSESVNEG+PDKLCD +SDA+LDACL QDPD K+ACETCTK ++VMV
Sbjct:    1 MESFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMV 53          
BLAST of CN186013 vs. ExPASy Swiss-Prot
Match: METK2_BETVU (S-adenosylmethionine synthetase 2 OS=Beta vulgaris GN=SAMS2 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 5.046e-18
Identity = 42/53 (79.25%), Postives = 49/53 (92.45%), Query Frame = -3
Query:  152 METFLFTSESVNEGYPDKLCDHISDAILDACLEQDPDRKLACETCTK-DLVMV 307
            METFLFTSESVNEG+PDKLCD +SDA+LDACL QDP+ K+ACETCTK ++VMV
Sbjct:    1 METFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPESKVACETCTKTNMVMV 53          
BLAST of CN186013 vs. ExPASy Swiss-Prot
Match: METK4_HORVU (S-adenosylmethionine synthetase 4 OS=Hordeum vulgare GN=SAM4 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 6.590e-18
Identity = 42/54 (77.78%), Postives = 50/54 (92.59%), Query Frame = -3
Query:  152 KMETFLFTSESVNEGYPDKLCDHISDAILDACLEQDPDRKLACETCTK-DLVMV 310
            ++ETFLFTSESVNEG+PDKLCD ISDA+LDACL +DPD K+ACETCTK ++VMV
Sbjct:    3 EVETFLFTSESVNEGHPDKLCDQISDAVLDACLAEDPDSKVACETCTKTNMVMV 56          
BLAST of CN186013 vs. ExPASy Swiss-Prot
Match: METK2_ORYSJ (S-adenosylmethionine synthetase 2 OS=Oryza sativa subsp. japonica GN=SAM2 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 6.590e-18
Identity = 42/52 (80.77%), Postives = 48/52 (92.31%), Query Frame = -3
Query:  152 ETFLFTSESVNEGYPDKLCDHISDAILDACLEQDPDRKLACETCTK-DLVMV 304
            ETFLFTSESVNEG+PDKLCD +SDA+LDACL QDPD K+ACETCTK ++VMV
Sbjct:    4 ETFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMV 55          
BLAST of CN186013 vs. ExPASy Swiss-Prot
Match: METK2_HORVU (S-adenosylmethionine synthetase 2 OS=Hordeum vulgare GN=SAM2 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 6.590e-18
Identity = 42/52 (80.77%), Postives = 48/52 (92.31%), Query Frame = -3
Query:  152 ETFLFTSESVNEGYPDKLCDHISDAILDACLEQDPDRKLACETCTK-DLVMV 304
            ETFLFTSESVNEG+PDKLCD +SDA+LDACL QDPD K+ACETCTK ++VMV
Sbjct:    4 ETFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMV 55          
BLAST of CN186013 vs. ExPASy Swiss-Prot
Match: METK1_HORVU (S-adenosylmethionine synthetase 1 OS=Hordeum vulgare GN=SAM1 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 6.590e-18
Identity = 42/52 (80.77%), Postives = 48/52 (92.31%), Query Frame = -3
Query:  152 ETFLFTSESVNEGYPDKLCDHISDAILDACLEQDPDRKLACETCTK-DLVMV 304
            ETFLFTSESVNEG+PDKLCD +SDA+LDACL QDPD K+ACETCTK ++VMV
Sbjct:    4 ETFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMV 55          
BLAST of CN186013 vs. ExPASy Swiss-Prot
Match: METK_GOSHI (S-adenosylmethionine synthetase OS=Gossypium hirsutum GN=SAMS PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.124e-17
Identity = 42/53 (79.25%), Postives = 49/53 (92.45%), Query Frame = -3
Query:  152 METFLFTSESVNEGYPDKLCDHISDAILDACLEQDPDRKLACETCTK-DLVMV 307
            METFLFTSESVNEG+PDKLCD ISDA+LDACL QDP+ K+ACETC+K ++VMV
Sbjct:    1 METFLFTSESVNEGHPDKLCDQISDAVLDACLAQDPESKVACETCSKTNMVMV 53          
BLAST of CN186013 vs. ExPASy Swiss-Prot
Match: METK4_ATRNU (S-adenosylmethionine synthetase 4 OS=Atriplex nummularia GN=SAMS4 PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.468e-17
Identity = 42/53 (79.25%), Postives = 49/53 (92.45%), Query Frame = -3
Query:  152 METFLFTSESVNEGYPDKLCDHISDAILDACLEQDPDRKLACETCTK-DLVMV 307
            ++TFLFTSESVNEG+PDKLCD ISDA+LDACL QDP+ K+ACETCTK +LVMV
Sbjct:    5 VDTFLFTSESVNEGHPDKLCDQISDAVLDACLAQDPESKVACETCTKTNLVMV 57          
The following BLAST results are available for this feature:
BLAST of CN186013 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 211
Match NameE-valueIdentityDescription
METK3_VITVI5.046e-1879.25S-adenosylmethionine synthetase 3 OS=Vitis vinifer... [more]
METK3_POPTR5.046e-1882.69S-adenosylmethionine synthetase 3 OS=Populus trich... [more]
METK2_SUASA5.046e-1879.25S-adenosylmethionine synthetase 2 OS=Suaeda salsa ... [more]
METK2_BETVU5.046e-1879.25S-adenosylmethionine synthetase 2 OS=Beta vulgaris... [more]
METK4_HORVU6.590e-1877.78S-adenosylmethionine synthetase 4 OS=Hordeum vulga... [more]
METK2_ORYSJ6.590e-1880.77S-adenosylmethionine synthetase 2 OS=Oryza sativa ... [more]
METK2_HORVU6.590e-1880.77S-adenosylmethionine synthetase 2 OS=Hordeum vulga... [more]
METK1_HORVU6.590e-1880.77S-adenosylmethionine synthetase 1 OS=Hordeum vulga... [more]
METK_GOSHI1.124e-1779.25S-adenosylmethionine synthetase OS=Gossypium hirsu... [more]
METK4_ATRNU1.468e-1779.25S-adenosylmethionine synthetase 4 OS=Atriplex numm... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002D17_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002D17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186013 ID=CN186013; Name=CN186013; organism=Citrus sinensis; type=EST; length=786bp
TTTTTTTTTTTTTTTTGAATTTACACTTCTATTAACTACCAAGTCCCATT
TATACTCTACACACATAATATTAATAAACTATATATGAATAAACAAACAT
AAAATCCTCAAATCAAAAGCAATTCTCGGCCGCAATATACAATAGCAATA
CAACCATAACCAAGTCTTTGGTACAGGTTTCACAAGCCAACTTCCTATCT
GGGTCTTGTTCGAGACAAGCATCGAGAATGGCATCGGAGATATGATCACA
GAGCTTGTCTGGATAACCCTCGTTCACAGATTCTGAAGTGAACAAAAAAG
TCTCCATTTTTTCTTCAAAAACTGTAGACTGCGGCACCAAAGATGACTGC
GTGTGAGGGGCTAACGATGGCGTCACTGTGCTTGAGGGGAGGGGCTGTGC
TAGGAGGCCGTGCACGTGAGGAAGAGAGGGGCTAAGCTGACACGAGGGAG
AGACATGCTCACAAGGAAGAAACTGAGAGGGGCTGAGCTGAAGTTCTGCG
TCGTGTGGAGAGGGAGAAACGCGAGGCTGAGAGGTGAGGGGGAGAGGCGT
GGGAAACAACCGCTTCAAGTTTTAAATTAACAGCATCAAACTAACCCAAC
AAAACTAAAACAAATATTCTCATACTGGGTAAAGTTCCATCAAGTGCAGC
AAAGTAAAAAGCATACAAACAAAAATAAAGGCATTTAGAAAAGAGATGTT
CCCTTTCCCTTCTTGTCTCCACCAATTTCAAAGTGCTTGCACCTCTTGAT
GGGATGTTGAGACACATGCTTGCAACCCTGGCATTG
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