CN186013

Overview
NameCN186013
Unique NameCN186013
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length786
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN186013 vs. ExPASy Swiss-Prot
Match: RL44_GOSHI (60S ribosomal protein L44 OS=Gossypium hirsutum GN=RPL44 PE=3 SV=3)

HSP 1 Score: 73.9442 bits (180), Expect = 1.096e-12
Identity = 31/31 (100.00%), Postives = 31/31 (100.00%), Query Frame = -1
Query:  694 QCQGCKHVSQHPIKRCKHFEIGGDKKGKGTS 786
            QCQGCKHVSQHPIKRCKHFEIGGDKKGKGTS
Sbjct:   73 QCQGCKHVSQHPIKRCKHFEIGGDKKGKGTS 103          
BLAST of CN186013 vs. ExPASy Swiss-Prot
Match: METK_LACCB (S-adenosylmethionine synthetase OS=Lactobacillus casei (strain BL23) GN=metK PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.168e-12
Identity = 37/53 (69.81%), Postives = 43/53 (81.13%), Query Frame = -3
Query:  149 ETFLFTSESVNEGYPDKLCDHISDAILDACLEQDPDRKLACE-TCTKDLVMVV 304
            E  LFTSESV+EG+PDK+ D ISDAILDA LEQDPD ++ACE T T  LV+VV
Sbjct:    3 ERHLFTSESVSEGHPDKIADQISDAILDAMLEQDPDSRVACETTVTTGLVLVV 55          
BLAST of CN186013 vs. ExPASy Swiss-Prot
Match: METK_LACC3 (S-adenosylmethionine synthetase OS=Lactobacillus casei (strain ATCC 334) GN=metK PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.168e-12
Identity = 37/53 (69.81%), Postives = 43/53 (81.13%), Query Frame = -3
Query:  149 ETFLFTSESVNEGYPDKLCDHISDAILDACLEQDPDRKLACE-TCTKDLVMVV 304
            E  LFTSESV+EG+PDK+ D ISDAILDA LEQDPD ++ACE T T  LV+VV
Sbjct:    3 ERHLFTSESVSEGHPDKIADQISDAILDAMLEQDPDSRVACETTVTTGLVLVV 55          
BLAST of CN186013 vs. ExPASy Swiss-Prot
Match: METK_CLOBB (S-adenosylmethionine synthetase OS=Clostridium botulinum (strain Eklund 17B / Type B) GN=metK PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.168e-12
Identity = 35/50 (70.00%), Postives = 42/50 (84.00%), Query Frame = -3
Query:  149 LFTSESVNEGYPDKLCDHISDAILDACLEQDPDRKLACETC-TKDLVMVV 295
            LFTSESV EG+PDK+CD ISDAILDA L +DP+ ++ACETC T  LVMV+
Sbjct:    4 LFTSESVTEGHPDKMCDQISDAILDAILTKDPNARVACETCTTTGLVMVM 53          
BLAST of CN186013 vs. ExPASy Swiss-Prot
Match: METK5_CAEEL (Probable S-adenosylmethionine synthetase 5 OS=Caenorhabditis elegans GN=sams-5 PE=2 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 3.168e-12
Identity = 33/44 (75.00%), Postives = 38/44 (86.36%), Query Frame = -3
Query:  167 FLFTSESVNEGYPDKLCDHISDAILDACLEQDPDRKLACETCTK 298
            FLFTSESV+EG+PDK+CD ISDA+LDA L QDP  K+ACET TK
Sbjct:    6 FLFTSESVSEGHPDKMCDQISDAVLDAHLAQDPHAKVACETVTK 49          
BLAST of CN186013 vs. ExPASy Swiss-Prot
Match: METK4_CAEEL (Probable S-adenosylmethionine synthetase 4 OS=Caenorhabditis elegans GN=sams-4 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.168e-12
Identity = 33/44 (75.00%), Postives = 38/44 (86.36%), Query Frame = -3
Query:  167 FLFTSESVNEGYPDKLCDHISDAILDACLEQDPDRKLACETCTK 298
            FLFTSESV+EG+PDK+CD ISDA+LDA L QDP  K+ACET TK
Sbjct:    6 FLFTSESVSEGHPDKMCDQISDAVLDAHLAQDPHAKVACETVTK 49          
BLAST of CN186013 vs. ExPASy Swiss-Prot
Match: METK3_CAEEL (Probable S-adenosylmethionine synthetase 3 OS=Caenorhabditis elegans GN=sams-3 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.168e-12
Identity = 33/44 (75.00%), Postives = 38/44 (86.36%), Query Frame = -3
Query:  167 FLFTSESVNEGYPDKLCDHISDAILDACLEQDPDRKLACETCTK 298
            FLFTSESV+EG+PDK+CD ISDA+LDA L QDP  K+ACET TK
Sbjct:    6 FLFTSESVSEGHPDKMCDQISDAVLDAHLAQDPHAKVACETVTK 49          
BLAST of CN186013 vs. ExPASy Swiss-Prot
Match: METK_LEPBL (S-adenosylmethionine synthetase OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain L550) GN=metK PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.137e-12
Identity = 34/53 (64.15%), Postives = 44/53 (83.02%), Query Frame = -3
Query:  152 METFLFTSESVNEGYPDKLCDHISDAILDACLEQDPDRKLACET-CTKDLVMV 307
            ++ F+FTSESV EG+PDK+CD ISDAILDA LEQDP  ++ACET  T +LV++
Sbjct:    3 LKDFIFTSESVGEGHPDKVCDQISDAILDAYLEQDPKSRVACETLATTNLVVI 55          
BLAST of CN186013 vs. ExPASy Swiss-Prot
Match: METK_LEPBJ (S-adenosylmethionine synthetase OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain JB197) GN=metK PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.137e-12
Identity = 34/53 (64.15%), Postives = 44/53 (83.02%), Query Frame = -3
Query:  152 METFLFTSESVNEGYPDKLCDHISDAILDACLEQDPDRKLACET-CTKDLVMV 307
            ++ F+FTSESV EG+PDK+CD ISDAILDA LEQDP  ++ACET  T +LV++
Sbjct:    3 LKDFIFTSESVGEGHPDKVCDQISDAILDAYLEQDPKSRVACETLATTNLVVI 55          
BLAST of CN186013 vs. ExPASy Swiss-Prot
Match: METK_ASCIM (S-adenosylmethionine synthetase OS=Ascobolus immersus PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.137e-12
Identity = 32/51 (62.75%), Postives = 42/51 (82.35%), Query Frame = -3
Query:  149 TFLFTSESVNEGYPDKLCDHISDAILDACLEQDPDRKLACETCTKDLVMVV 301
            +FLFTSESV EG+PDK+ D +SDA+LDACL +DP  K+ACET TK  +++V
Sbjct:   13 SFLFTSESVGEGHPDKIADQVSDAVLDACLAEDPLSKVACETATKTGMIMV 63          
The following BLAST results are available for this feature:
BLAST of CN186013 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 211
Match NameE-valueIdentityDescription
RL44_GOSHI1.096e-12100.0060S ribosomal protein L44 OS=Gossypium hirsutum GN... [more]
METK_LACCB3.168e-1269.81S-adenosylmethionine synthetase OS=Lactobacillus c... [more]
METK_LACC33.168e-1269.81S-adenosylmethionine synthetase OS=Lactobacillus c... [more]
METK_CLOBB3.168e-1270.00S-adenosylmethionine synthetase OS=Clostridium bot... [more]
METK5_CAEEL3.168e-1275.00Probable S-adenosylmethionine synthetase 5 OS=Caen... [more]
METK4_CAEEL3.168e-1275.00Probable S-adenosylmethionine synthetase 4 OS=Caen... [more]
METK3_CAEEL3.168e-1275.00Probable S-adenosylmethionine synthetase 3 OS=Caen... [more]
METK_LEPBL4.137e-1264.15S-adenosylmethionine synthetase OS=Leptospira borg... [more]
METK_LEPBJ4.137e-1264.15S-adenosylmethionine synthetase OS=Leptospira borg... [more]
METK_ASCIM4.137e-1262.75S-adenosylmethionine synthetase OS=Ascobolus immer... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002D17_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002D17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186013 ID=CN186013; Name=CN186013; organism=Citrus sinensis; type=EST; length=786bp
TTTTTTTTTTTTTTTTGAATTTACACTTCTATTAACTACCAAGTCCCATT
TATACTCTACACACATAATATTAATAAACTATATATGAATAAACAAACAT
AAAATCCTCAAATCAAAAGCAATTCTCGGCCGCAATATACAATAGCAATA
CAACCATAACCAAGTCTTTGGTACAGGTTTCACAAGCCAACTTCCTATCT
GGGTCTTGTTCGAGACAAGCATCGAGAATGGCATCGGAGATATGATCACA
GAGCTTGTCTGGATAACCCTCGTTCACAGATTCTGAAGTGAACAAAAAAG
TCTCCATTTTTTCTTCAAAAACTGTAGACTGCGGCACCAAAGATGACTGC
GTGTGAGGGGCTAACGATGGCGTCACTGTGCTTGAGGGGAGGGGCTGTGC
TAGGAGGCCGTGCACGTGAGGAAGAGAGGGGCTAAGCTGACACGAGGGAG
AGACATGCTCACAAGGAAGAAACTGAGAGGGGCTGAGCTGAAGTTCTGCG
TCGTGTGGAGAGGGAGAAACGCGAGGCTGAGAGGTGAGGGGGAGAGGCGT
GGGAAACAACCGCTTCAAGTTTTAAATTAACAGCATCAAACTAACCCAAC
AAAACTAAAACAAATATTCTCATACTGGGTAAAGTTCCATCAAGTGCAGC
AAAGTAAAAAGCATACAAACAAAAATAAAGGCATTTAGAAAAGAGATGTT
CCCTTTCCCTTCTTGTCTCCACCAATTTCAAAGTGCTTGCACCTCTTGAT
GGGATGTTGAGACACATGCTTGCAACCCTGGCATTG
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