DC900127

Overview
NameDC900127
Unique NameDC900127
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length688
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12042 contig Csv1_Contig12042:451..1138. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900127 vs. ExPASy Swiss-Prot
Match: FXL14_MOUSE (F-box/LRR-repeat protein 14 OS=Mus musculus GN=Fbxl14 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.943e-12
Identity = 64/220 (29.09%), Postives = 100/220 (45.45%), Query Frame = 1
Query:    7 LDLCQCPAITDRALITIAKNCPKLIDLTIESCSSIGNEGLQAVGRFCPNLKSISIKDCRLVGDQGIASLLSSATYSLEK-VKLQRLNITDVSLAVIGHYGMAVTDLFLTGLPHVSERGFWVMGSGHGLQKLKSLTITSCMGVTDLGLEAVGKGCPNLKQFCLRKCAFLSDNGLISFAKAAFSLESLQLEECHRI--TQLGFFGSLLNCGEKXKALSLVSC 657
            L+L  C  ITD +L  IA+    L  L +  CS+I N GL  +      LKS++++ CR + D GI  L      + E  + L++L + D            +TDL    L H+S           GL  L+ L ++ C G++D GL  +     +L+   LR C  +SD G++  A  +  L  L +  C ++    L +    L   +  K+LSL SC
Sbjct:  122 LNLSLCKQITDSSLGRIAQYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCLGLEQLTLQDC---------QKLTDL---SLKHIS----------RGLTGLRLLNLSFCGGISDAGLLHLSH-MGSLRSLNLRSCDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAYIAQGL---DGLKSLSLCSC 315          
BLAST of DC900127 vs. ExPASy Swiss-Prot
Match: FXL14_HUMAN (F-box/LRR-repeat protein 14 OS=Homo sapiens GN=FBXL14 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.943e-12
Identity = 64/220 (29.09%), Postives = 100/220 (45.45%), Query Frame = 1
Query:    7 LDLCQCPAITDRALITIAKNCPKLIDLTIESCSSIGNEGLQAVGRFCPNLKSISIKDCRLVGDQGIASLLSSATYSLEK-VKLQRLNITDVSLAVIGHYGMAVTDLFLTGLPHVSERGFWVMGSGHGLQKLKSLTITSCMGVTDLGLEAVGKGCPNLKQFCLRKCAFLSDNGLISFAKAAFSLESLQLEECHRI--TQLGFFGSLLNCGEKXKALSLVSC 657
            L+L  C  ITD +L  IA+    L  L +  CS+I N GL  +      LKS++++ CR + D GI  L      + E  + L++L + D            +TDL    L H+S           GL  L+ L ++ C G++D GL  +     +L+   LR C  +SD G++  A  +  L  L +  C ++    L +    L   +  K+LSL SC
Sbjct:  122 LNLSLCKQITDSSLGRIAQYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCLGLEQLTLQDC---------QKLTDL---SLKHIS----------RGLTGLRLLNLSFCGGISDAGLLHLSH-MGSLRSLNLRSCDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAYIAQGL---DGLKSLSLCSC 315          
BLAST of DC900127 vs. ExPASy Swiss-Prot
Match: FXL14_BOVIN (F-box/LRR-repeat protein 14 OS=Bos taurus GN=FBXL14 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.943e-12
Identity = 64/220 (29.09%), Postives = 100/220 (45.45%), Query Frame = 1
Query:    7 LDLCQCPAITDRALITIAKNCPKLIDLTIESCSSIGNEGLQAVGRFCPNLKSISIKDCRLVGDQGIASLLSSATYSLEK-VKLQRLNITDVSLAVIGHYGMAVTDLFLTGLPHVSERGFWVMGSGHGLQKLKSLTITSCMGVTDLGLEAVGKGCPNLKQFCLRKCAFLSDNGLISFAKAAFSLESLQLEECHRI--TQLGFFGSLLNCGEKXKALSLVSC 657
            L+L  C  ITD +L  IA+    L  L +  CS+I N GL  +      LKS++++ CR + D GI  L      + E  + L++L + D            +TDL    L H+S           GL  L+ L ++ C G++D GL  +     +L+   LR C  +SD G++  A  +  L  L +  C ++    L +    L   +  K+LSL SC
Sbjct:  122 LNLSLCKQITDSSLGRIAQYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCLGLEQLTLQDC---------QKLTDL---SLKHIS----------RGLTGLRLLNLSFCGGISDAGLLHLSH-MGSLRSLNLRSCDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAYIAQGL---DGLKSLSLCSC 315          
BLAST of DC900127 vs. ExPASy Swiss-Prot
Match: FXL20_RAT (F-box/LRR-repeat protein 20 OS=Rattus norvegicus GN=Fbxl20 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.329e-12
Identity = 50/160 (31.25%), Postives = 80/160 (50.00%), Query Frame = 1
Query:    1 EKLDLCQCPAITDRALITIAKNCPKLIDLTIESCSSIGNEGLQAVGRFCPNLKSISIKDCRLVGDQGIASLLSSATYSLEKVKLQR-LNITDVSLAVIGHYGMAVTDLFLTGLPHVSERGFWVMGSGHGLQKLKSLTITSCMGVTDLGLEAVGKGCPNLK 477
            E L L  C   TD    +++K C KL  L + SC+SI N  L+A+   CP L+ ++I  C  V   GI +L+      L+ + L+    + D +L  IG +   +  L L     +++ G  ++    G  KL+SL  + C  +TD  L A+G+ CP L+
Sbjct:  120 EVLSLNGCTKTTDATCTSLSKFCSKLRHLDLASCTSITNMSLKALSEGCPLLEQLNISWCDQVTKDGIQALVRGCG-GLKALFLKGCTQLEDEALKYIGAHCPELVTLNLQTCLQITDEG--LITICRGCHKLQSLCASGCSNITDAILNALGQNCPRLR 276          

HSP 2 Score: 69.3218 bits (168), Expect = 2.149e-11
Identity = 48/195 (24.62%), Postives = 82/195 (42.05%), Query Frame = 1
Query:    4 KLDLCQCPAITDRALITIAKNCPKLIDLTIESCSSIGNEGLQAVGRFCPNLKSISIKDCRLVGDQGIASLLSSATYSLEKVKLQRLNITDVSLAVIGHYGMAVTDLFLTGLPHVSERGFWVMGSGHGLQKLKSLTITSCMGVTDLGLEAVGKGCPNLKQFCLRKCAFLSDNGLISFAKAAFSLESLQLEECHRIT 588
            KL L  C  + D AL T A+NC  +  L++  C+   +    ++ +FC  L+ + +  C                           +IT++SL  +      +  L ++    V++ G   +  G G   LK+L +  C  + D  L+ +G  CP L    L+ C  ++D GLI+  +    L+SL    C  IT
Sbjct:   95 KLSLRGCLGVGDNALRTFAQNCRNIEVLSLNGCTKTTDATCTSLSKFCSKLRHLDLASCT--------------------------SITNMSLKALSEGCPLLEQLNISWCDQVTKDGIQALVRGCG--GLKALFLKGCTQLEDEALKYIGAHCPELVTLNLQTCLQITDEGLITICRGCHKLQSLCASGCSNIT 261          
BLAST of DC900127 vs. ExPASy Swiss-Prot
Match: AMN1_RAT (Protein AMN1 homolog OS=Rattus norvegicus GN=Amn1 PE=2 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 2.149e-11
Identity = 57/179 (31.84%), Postives = 92/179 (51.40%), Query Frame = 1
Query:    1 EKLDLCQCPAITDRALITIAKNCPKLIDLTIESC----SSIGNEGLQAVGRFCPNLKSISIKDCRLVGDQGIASLLSSATYSLEKVKLQR-LNITDVSLAVIGHY--GMAVTDLFLTGLPHVSERGFWVMGSGHGLQKLKSLTITSCMGVTDLGLEAVGKGCPNLKQFCLRKCAFLSDN 516
            ++LDL  C  I+D AL  + K C KL  L ++SC    +SI +EG++AV   C +L  IS+K C  V D+G+ +L  +    L+ + L   L+ITD SL  +G     +   D   T    VS+ G   + SG   ++L+ + +  C+ +TD  +EA    CP +       C  ++D+
Sbjct:   64 QRLDLRSCN-ISDVALQHLCK-CRKLKALNLKSCREHRNSITSEGIKAVASSCSDLHEISLKGCCSVTDEGVLALALNCQL-LKIIDLGGCLSITDESLHALGKNCPFLQCVDFSTT---QVSDNGVVALVSGPCAKQLEEINMGYCINLTDKAVEAALTACPQICILLFHGCPLITDH 236          
BLAST of DC900127 vs. ExPASy Swiss-Prot
Match: FXL13_HUMAN (F-box/LRR-repeat protein 13 OS=Homo sapiens GN=FBXL13 PE=2 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 8.165e-11
Identity = 56/255 (21.96%), Postives = 104/255 (40.78%), Query Frame = 1
Query:    1 EKLDLCQCPAITDRALITIAKNCPKLI-------------------------DLTIESCSSIGNEGLQAV--GRFCPNLKSISIKDCRLVGDQGIASLLSSATYSLEKVKLQRLNITDVSLAVIGHYGMAVTDLFLTGLPHVSERGFWVMGSGHGLQKLKSLTITSCMGVTDLGLEAVGKGCPNLKQFCLRKCAFLSDNGLISFAKAAFSLESLQLEECHRITQLGFFGSLLN-CGEKXKALSLVSCLGIKDQNL 681
            ++L++  CP  TD ++  I++ CP ++                         +L++  C    ++GLQ +  G  C  L  + +  C  +  QG   + +S T  +         +TD  +  +      +T L  TG PH+S+  F  + +     KL+ +       VTD   + + K  PNL    +  C  ++D+ L S +     L  L L  C RI  +G    L      + + L+L +C+ + D ++
Sbjct:  248 QELNVSDCPTFTDESMRHISEGCPGVLCLNLSNTTITNRTMRLLPRHFHNLQNLSLAYCRRFTDKGLQYLNLGNGCHKLIYLDLSGCTQISVQGFRYIANSCTGIMHLTINDMPTLTDNCVKALVEKCSRITSLVFTGAPHISDCTFRALSA----CKLRKIRFEGNKRVTDASFKFIDKNYPNLSHIYMADCKGITDSSLRSLSPLK-QLTVLNLANCVRIGDMGLKQFLDGPASMRIRELNLSNCVRLSDASV 497          
The following BLAST results are available for this feature:
BLAST of DC900127 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
FXL14_MOUSE1.943e-1229.09F-box/LRR-repeat protein 14 OS=Mus musculus GN=Fbx... [more]
FXL14_HUMAN1.943e-1229.09F-box/LRR-repeat protein 14 OS=Homo sapiens GN=FBX... [more]
FXL14_BOVIN1.943e-1229.09F-box/LRR-repeat protein 14 OS=Bos taurus GN=FBXL1... [more]
FXL20_RAT4.329e-1231.25F-box/LRR-repeat protein 20 OS=Rattus norvegicus G... [more]
AMN1_RAT2.149e-1131.84Protein AMN1 homolog OS=Rattus norvegicus GN=Amn1 ... [more]
FXL13_HUMAN8.165e-1121.96F-box/LRR-repeat protein 13 OS=Homo sapiens GN=FBX... [more]

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Properties
Property NameValue
Genbank descriptionDC900127 VSS Citrus sinensis cDNA clone VS27V45 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900127 ID=DC900127; Name=DC900127; organism=Citrus sinensis; type=EST; length=688bp
GAGAAGCTTGACCTTTGCCAGTGTCCTGCTATTACTGACCGAGCTTTGAT
CACAATTGCAAAGAACTGCCCTAAATTGATTGATCTGACAATAGAGTCTT
GCTCAAGCATCGGAAATGAAGGTCTGCAGGCTGTTGGGAGATTCTGCCCC
AATCTGAAGTCCATTTCAATCAAGGATTGCCGCCTTGTTGGGGATCAAGG
GATTGCTAGTTTGTTGTCTTCAGCCACTTATTCTCTGGAGAAAGTGAAGC
TGCAAAGGTTGAACATTACTGATGTTTCTCTTGCTGTTATTGGACACTAT
GGCATGGCAGTTACTGATCTCTTCCTTACTGGCCTTCCACATGTGAGTGA
GAGAGGCTTCTGGGTTATGGGCAGTGGTCATGGGTTGCAAAAATTGAAGT
CCTTGACAATTACATCATGCATGGGAGTAACGGATTTGGGCCTTGAAGCT
GTGGGCAAGGGGTGCCCAAATTTGAAGCAGTTCTGCCTCCGAAAATGTGC
CTTTTTATCTGACAATGGACTGATCTCTTTTGCTAAAGCTGCTTTCTCAC
TTGAAAGCCTTCAGTTGGAAGAGTGCCACAGGATCACCCAACTTGGGTTT
TTTGGTTCCCTTTTAAACTGTGGTGAAAAGNTGAAGGCTTTATCATTGGT
GAGCTGCTTGGGGATTAAGGATCAAAATCTGGGTGTCC
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