CN186010

Overview
NameCN186010
Unique NameCN186010
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length705
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig199 contig Csv1_Contig199:282..986. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN186010 vs. ExPASy Swiss-Prot
Match: HS22M_PEA (Heat shock 22 kDa protein, mitochondrial OS=Pisum sativum GN=HSP22 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.230e-14
Identity = 54/145 (37.24%), Postives = 77/145 (53.10%), Query Frame = -2
Query:  267 LMDPSFPTRTMRQMLDTMDRLLEDTMAFPGRSRAGGGGQVRTPWDIKEEENEIKMRFDMPGLXXXXXXXXXXXXVLVIKGEHRAEEA-----GGASFSSYDTRLQLPDNCEK-DKVKAELKNGVLYISIPKTKVERK--VIDVQI 677
            + DP  P R++ Q+L+ +D LL D       SR G        WD +E E+ + +R DMPGL             L IKGE  A+E+      G  FSS   R+ LP+   K D +KAE+KNGVL +++PK K E +  VI+V++
Sbjct:   69 VFDPFSPPRSLSQVLNMVD-LLTDNPVLSAASRRG--------WDARETEDALFLRLDMPGLGKEDVKISVEQNTLTIKGEEGAKESEEKEKSGRRFSS---RIDLPEKLYKIDVIKAEMKNGVLKVTVPKMKEEERNNVINVKV 201          
BLAST of CN186010 vs. ExPASy Swiss-Prot
Match: HS24M_ORYSJ (24.1 kDa heat shock protein, mitochondrial OS=Oryza sativa subsp. japonica GN=HSP24.1 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.898e-12
Identity = 45/122 (36.89%), Postives = 65/122 (53.28%), Query Frame = -2
Query:  285 QMLDTMDRLLEDTMAFPGRSRAGGGGQVRTPWDIKEEENEIKMRFDMPGLXXXXXXXXXXXXVLVIKGEHRAE--EAGGASFSSYDTRLQL-PDNCEKDKVKAELKNGVLYISIPKTKVERK 641
            Q L  +  L++D     GR+   G   +R  W+ KE E  + +R DMPGL             LVIKGE   E  E  GA+ + Y  R++L P+    D++KAE+KNGVL + +PK K E++
Sbjct:   93 QSLGRLLSLMDDLATPAGRA---GAATLRRGWNAKESEEALHLRVDMPGLGKEHVKVWAEQNSLVIKGEGEKEAGEDEGAAPARYSGRIELAPEVYRMDQIKAEMKNGVLKVVVPKVKEEQR 211          
BLAST of CN186010 vs. ExPASy Swiss-Prot
Match: HS26M_ARATH (26.5 kDa heat shock protein, mitochondrial OS=Arabidopsis thaliana GN=HSP26.5 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.716e-11
Identity = 36/96 (37.50%), Postives = 58/96 (60.42%), Query Frame = -2
Query:  285 IKEEENEIKMRFDMPGLXXXXXXXXXXXXVLVIKGEHRAEEAGGA----------SFSSYDTRLQLPDNCEKDKVKAELKNGVLYISIPKTKVERK 542
            +KE+++  K+R+++PGL            +L IKG+H+AEE  G+          S+  Y+T L LPD+ + + +KAELKNGVL + IP+T+  +K
Sbjct:  129 VKEQDDCYKLRYEVPGLTKEDVKITVNDGILTIKGDHKAEEEKGSPEEDEYWSSKSYGYYNTSLSLPDDAKVEDIKAELKNGVLNLVIPRTEKPKK 224          
BLAST of CN186010 vs. ExPASy Swiss-Prot
Match: HS22M_SOYBN (Heat shock 22 kDa protein, mitochondrial OS=Glycine max GN=HSP23.9 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.927e-11
Identity = 49/153 (32.03%), Postives = 69/153 (45.10%), Query Frame = -2
Query:  267 SFPTRTMRQ--MLDTMDRLLEDTMAFPGRSRAGGGGQVRTP---------------WDIKEEENEIKMRFDMPGLXXXXXXXXXXXXVLVIKGEHRAEEAGGASFSSYDTRLQLPDNCEK-DKVKAELKNGVLYISIPKTKVERK--VIDVQI 665
            SFP+   R    L  +  +  D+   PG    G G     P               WD +E E+ + +R DMPGL             L+IKGE   E     S   Y +R+ LPD   K D+++AE+KNGVL + +PK K E +  VI V++
Sbjct:   58 SFPSTARRDDIFLRCVGSIFSDSEFEPGSEHDGPGHGQSVPLRVARDRSWRWSGRGWDARETEDALHLRVDMPGLAKEDVKISVEQNTLIIKGEGAKEGDEEESARRYTSRIDLPDKLYKIDQIRAEMKNGVLKVVVPKMKEEERKDVISVKV 210          
The following BLAST results are available for this feature:
BLAST of CN186010 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
HS22M_PEA8.230e-1437.24Heat shock 22 kDa protein, mitochondrial OS=Pisum ... [more]
HS24M_ORYSJ5.898e-1236.8924.1 kDa heat shock protein, mitochondrial OS=Oryz... [more]
HS26M_ARATH1.716e-1137.5026.5 kDa heat shock protein, mitochondrial OS=Arab... [more]
HS22M_SOYBN2.927e-1132.03Heat shock 22 kDa protein, mitochondrial OS=Glycin... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002D15_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002D15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186010 ID=CN186010; Name=CN186010; organism=Citrus sinensis; type=EST; length=705bp
TTCTCAATTTACTTATGCACTTAAAAAGCTGGACATGTAGATCACAAAAC
CTTAACATACACATTGCGCTAGGCACACATCATTATAATTACAGGATCTG
AACATCAATGACCTTGCGCTCCACATGGGTCTTAGGAATTGAAATGTAAA
GAACACCATTCGTCAGCTCTGCATCTCAATTTATTTATACACTTACAAAG
CTGGACATGTAGATCACAAAACCTCAACATACACATTTCGCTAGGCACTC
ATTATTATAATTACAGAATCTGAACATCAATGACCTTGCGCTCCACCTTT
GTCTTAGGAATTGAAATGTAAAGAACACCATTCTTGAGCTCTGCCTTGAC
CTTATCTTTCTCACAGTTATCAGGAAGCTGGAGACGAGTATCGTAAGAGC
TAAAACTTGCACCTCCAGCTTCTTCTGCCCTGTGCTCTCCTTTAATGACA
AGGACTTCATCTTCCACCGACACTTTGACATCCTCCTTAGAGAGTCCAGG
CATGTCAAATCTCATTTTGATCTCATTTTCCTCCTCTTTGATGTCCCACG
GTGTTCTCACCTGGCCTCCCCCGCCAGCCCGGCTCCTCCCCGGAAAAGCC
ATCGTATCCTCTAATAGACGGTCCATTGTGTCCAGCATCTGCCGCATTGT
CCTCGTTGGAAACGAGGGATCCATCAAACCGAAAGGTGAAATATCGAGAG
CCGTT
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